Rmu_sc0004359.1_g000018

No description available

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004359.1
Physical Location & Seq
Forward (+)
75231 .. 75782
552 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004359.1_g000018.1.cds

Sequence Viewer

Length: 552 bp
atgaaaactataatcagggctaagcataaccctatttcaatgcaagagttaaggtctcttttgctcattgctcaagctgaacttgaagaggttgacaagtctatttccttacctttcaatactgaaatcgtagcacaaggtgataatgtcaaaaggtctactcctgcaccaactcatgttatagatgccaaatatgacgttactgctttgatgcctccaagtagtgttgcccattctattgaatatactgcacaatctaggcctaattcaaggtacatgaatgctccttatgtcactgcatctgttcctacaatgacttctacatatgctacaaatactattgtacaaaacaagaactccataatgcaacctttgccaacccatgatcccatattctatcaatggtatgttcaaccacaagaaaattctgattatgcttacaatactggtgaaagtcaatacaatgaagcattcaattctggtgttactgagcgaaatgaaggtctcatgcaacaaaatggttgcttacatcaaagtgaaggtctctcatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

183

Amino Acids

20.46

Weight (kDa)

5.29

Isoelectric Point (pI)

56.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 158
AclWI GGATC 1 cut(s) 380
AcsI RAATTY 1 cut(s) 424
AdeI CACNNNGTG 1 cut(s) 140
AfaI GTAC 2 cut(s) 275, 345
AgsI TTSAA 7 cut(s) 39, 86, 118, 242, 270, 413, 475
AluBI AGCT 1 cut(s) 77
AluI AGCT 1 cut(s) 77
Alw26I GTCTC 3 cut(s) 60, 509, 548
AlwI GGATC 1 cut(s) 380
AoxI GGCC 1 cut(s) 260
ApoI RAATTY 1 cut(s) 424
ArsI GACNNNNNNTTYG 3 cut(s) 487, 519, 526
AsuHPI GGTGA 2 cut(s) 152, 461
BcoDI GTCTC 3 cut(s) 60, 509, 548
BfaI CTAG 1 cut(s) 258
BlpI GCTNAGC 1 cut(s) 21
BmsI GCATC 3 cut(s) 175, 201, 308
Bpu1102I GCTNAGC 1 cut(s) 21
BpuEI CTTGAG 1 cut(s) 57
BsaI GGTCTC 3 cut(s) 60, 509, 548
BsaXI ACNNNNNCTCC 2 cut(s) 341, 371
Bse1I ACTGG 1 cut(s) 451
Bse3DI GCAATG 1 cut(s) 66
BseMI GCAATG 1 cut(s) 66
BseMII CTCAG 1 cut(s) 480
BseNI ACTGG 1 cut(s) 451
BsgI GTGCAG 2 cut(s) 150, 234
BshFI GGCC 1 cut(s) 262
BsmAI GTCTC 3 cut(s) 60, 509, 548
BsmI GAATGC 2 cut(s) 286, 470
BsnI GGCC 1 cut(s) 262
Bso31I GGTCTC 3 cut(s) 60, 509, 548
Bsp1407I TGTACA 1 cut(s) 343
Bsp143I GATC 1 cut(s) 385
Bsp1720I GCTNAGC 1 cut(s) 21
BspANI GGCC 1 cut(s) 262
BspCNI CTCAG 1 cut(s) 481
BspPI GGATC 1 cut(s) 380
BspTNI GGTCTC 3 cut(s) 60, 509, 548
BsrDI GCAATG 1 cut(s) 66
BsrGI TGTACA 1 cut(s) 343
BsrI ACTGG 1 cut(s) 451
BssMI GATC 1 cut(s) 385
Bst6I CTCTTC 1 cut(s) 81
BstAPI GCANNNNNTGC 1 cut(s) 373
BstAUI TGTACA 1 cut(s) 343
BstDEI CTNAG 2 cut(s) 21, 489
BstKTI GATC 1 cut(s) 388
BstMAI GTCTC 3 cut(s) 60, 509, 548
BstMBI GATC 1 cut(s) 385
BstMWI GCNNNNNNNGC 1 cut(s) 373
BsuRI GGCC 1 cut(s) 262
BtsI GCAGTG 1 cut(s) 294
BtsIMutI CAGTG 1 cut(s) 294
Csp6I GTAC 2 cut(s) 274, 344
CviAII CATG 4 cut(s) 176, 277, 383, 508
CviJI RGCY 3 cut(s) 20, 77, 262
CviKI_1 RGCY 3 cut(s) 20, 77, 262
CviQI GTAC 2 cut(s) 274, 344
DdeI CTNAG 2 cut(s) 21, 489
DpnI GATC 1 cut(s) 387
DpnII GATC 1 cut(s) 385
DraIII CACNNNGTG 1 cut(s) 140
Eam1104I CTCTTC 1 cut(s) 81
EarI CTCTTC 1 cut(s) 81
Eco147I AGGCCT 1 cut(s) 262
Eco31I GGTCTC 3 cut(s) 60, 509, 548
FaeI CATG 4 cut(s) 179, 280, 386, 511
FalI AAGNNNNNCTT 2 cut(s) 66, 98
FatI CATG 4 cut(s) 175, 276, 382, 507
FauNDI CATATG 1 cut(s) 325
FblI GTMKAC 1 cut(s) 158
FspBI CTAG 1 cut(s) 258
HaeIII GGCC 1 cut(s) 262
Hin1II CATG 4 cut(s) 179, 280, 386, 511
HincII GTYRAC 1 cut(s) 94
HindII GTYRAC 1 cut(s) 94
HphI GGTGA 2 cut(s) 152, 461
Hpy166II GTNNAC 2 cut(s) 94, 159
Hpy188I TCNGA 1 cut(s) 430
Hpy8I GTNNAC 2 cut(s) 94, 159
HpyAV CCTTC 2 cut(s) 494, 533
HpyCH4IV ACGT 1 cut(s) 198
HpyCH4V TGCA 6 cut(s) 43, 167, 251, 299, 367, 511
HpyF10VI GCNNNNNNNGC 1 cut(s) 373
HpyF3I CTNAG 2 cut(s) 21, 489
HpySE526I ACGT 1 cut(s) 198
Hsp92II CATG 4 cut(s) 179, 280, 386, 511
Kzo9I GATC 1 cut(s) 385
LmnI GCTCC 1 cut(s) 289
LpnPI CCDG 3 cut(s) 177, 432, 465
LweI GCATC 3 cut(s) 175, 201, 308
MaeI CTAG 1 cut(s) 258
MaeII ACGT 1 cut(s) 198
MaeIII GTNAC 3 cut(s) 199, 292, 484
MalI GATC 1 cut(s) 387
MboI GATC 1 cut(s) 385
MboII GAAGA 1 cut(s) 98
MluCI AATT 3 cut(s) 265, 424, 475
MnlI CCTC 2 cut(s) 82, 225
MseI TTAA 1 cut(s) 50
MslI CAYNNNNRTG 1 cut(s) 534
Mva1269I GAATGC 2 cut(s) 286, 470
MwoI GCNNNNNNNGC 1 cut(s) 373
NdeI CATATG 1 cut(s) 325
NdeII GATC 1 cut(s) 385
NlaIII CATG 4 cut(s) 179, 280, 386, 511
NmuCI GTSAC 1 cut(s) 292
PceI AGGCCT 1 cut(s) 262
PctI GAATGC 2 cut(s) 286, 470
RsaI GTAC 2 cut(s) 275, 345
RsaNI GTAC 2 cut(s) 274, 344
RseI CAYNNNNRTG 1 cut(s) 534
SaqAI TTAA 1 cut(s) 50
Sau3AI GATC 1 cut(s) 385
SfaNI GCATC 3 cut(s) 175, 201, 308
SmiMI CAYNNNNRTG 1 cut(s) 534
SmlI CTYRAG 1 cut(s) 72
SmoI CTYRAG 1 cut(s) 72
Sse9I AATT 3 cut(s) 265, 424, 475
SseBI AGGCCT 1 cut(s) 262
SspMI CTAG 1 cut(s) 258
StuI AGGCCT 1 cut(s) 262
TaiI ACGT 1 cut(s) 201
TasI AATT 3 cut(s) 265, 424, 475
TatI WGTACW 1 cut(s) 343
Tru1I TTAA 1 cut(s) 50
Tru9I TTAA 1 cut(s) 50
TscAI CASTG 1 cut(s) 301
TseFI GTSAC 1 cut(s) 292
Tsp45I GTSAC 1 cut(s) 292
TspDTI ATGAA 4 cut(s) 17, 293, 480, 513
TspRI CASTG 1 cut(s) 301
XapI RAATTY 1 cut(s) 424
XmiI GTMKAC 1 cut(s) 158
XspI CTAG 1 cut(s) 258
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.