Rroxscaffold_6G00388920
NAC Family

Chromatin structure-remodeling complex protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0001340
Physical Location & Seq
Forward (+)
2302069 .. 2321998
19930 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00388920.1

Sequence Viewer

Length: 312 bp
ATGGTTCTAATGAACACTATGAATATCATACTTGCTTATTCTGGGCCCCACATGGTCATTTTGGATTTCAGGATGAAATTCAAGGAAGGTCATGTCTTGCCTTATGATGGAAAGATTAGTTGGCTAATTGGGTTGGACCCATTTTCTTCAAGCAGACCACCTGTTGGACCTATCGGTACAGGCCATGACTATTATCAAGGATCTGCAACTCATCGAAGTAGTCGGTCTTTTGATCATGAAAGTCTATCTGGTTTAGACTCGAAATACGTGATTATAAATGAATTGGTTCAGTGTACAACATTCGATGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000166 GO:0000228 GO:0000785 GO:0000790 GO:0000988 GO:0000990 GO:0000991 GO:0002831 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005829 GO:0006139 GO:0006325 GO:0006338 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0006950 GO:0006996 GO:0007275 GO:0008026 GO:0008094 GO:0008144 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009611 GO:0009653 GO:0009791 GO:0009889 GO:0009908 GO:0009966 GO:0009987 GO:0010104 GO:0010199 GO:0010467 GO:0010468 GO:0010556 GO:0010646 GO:0010959 GO:0016043 GO:0016070 GO:0016462 GO:0016514 GO:0016586 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017076 GO:0017111 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022414 GO:0023051 GO:0030554 GO:0031323 GO:0031326 GO:0031347 GO:0031974 GO:0031981 GO:0032101 GO:0032392 GO:0032501 GO:0032502 GO:0032508 GO:0032553 GO:0032555 GO:0032559 GO:0032774 GO:0032879 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0034756 GO:0035639 GO:0036094 GO:0040029 GO:0042623 GO:0043044 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043269 GO:0043900 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0048367 GO:0048583 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0048859 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051171 GO:0051252 GO:0051276 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0070035 GO:0070297 GO:0070603 GO:0071103 GO:0071704 GO:0071840 GO:0080090 GO:0080134 GO:0090304 GO:0090567 GO:0090691 GO:0097159 GO:0097367 GO:0097659 GO:0140097 GO:0140110 GO:1900150 GO:1900390 GO:1900393 GO:1900400 GO:1901265 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902494 GO:1902531 GO:1903506 GO:1904949 GO:2000022 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04714 ko05225 map04714 map05225
Pfam Domains
Protein Families
Helicase_C SNF2_N SnAC

Protein Analysis

103

Amino Acids

11.55

Weight (kDa)

5.88

Isoelectric Point (pI)

52.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 275
AccB7I CCANNNNNTGG 1 cut(s) 164
AclWI GGATC 1 cut(s) 208
AcsI RAATTY 1 cut(s) 77
AfaI GTAC 2 cut(s) 178, 295
AfiI CCNNNNNNNGG 2 cut(s) 107, 164
AgsI TTSAA 2 cut(s) 82, 150
AjuI GAANNNNNNNTTGG 2 cut(s) 103, 135
AlwI GGATC 1 cut(s) 208
AoxI GGCC 2 cut(s) 44, 181
ApaI GGGCCC 1 cut(s) 48
ApoI RAATTY 1 cut(s) 77
Asp700I GAANNNNTTC 1 cut(s) 285
AspS9I GGNCC 4 cut(s) 44, 45, 136, 167
AvaII GGWCC 2 cut(s) 136, 167
BaeGI GKGCMC 1 cut(s) 48
BanII GRGCYC 1 cut(s) 48
BccI CCATC 1 cut(s) 101
BclI TGATCA 1 cut(s) 232
BfaI CTAG 1 cut(s) 310
Bme18I GGWCC 2 cut(s) 136, 167
BmgT120I GGNCC 4 cut(s) 44, 45, 136, 167
BmiI GGNNCC 3 cut(s) 46, 47, 138
BsaAI YACGTR 1 cut(s) 268
Bsc4I CCNNNNNNNGG 2 cut(s) 107, 164
BseGI GGATG 1 cut(s) 78
BseLI CCNNNNNNNGG 2 cut(s) 107, 164
BseSI GKGCMC 1 cut(s) 48
BshFI GGCC 2 cut(s) 46, 183
BslI CCNNNNNNNGG 2 cut(s) 107, 164
BsnI GGCC 2 cut(s) 46, 183
Bsp120I GGGCCC 1 cut(s) 44
Bsp1286I GDGCHC 1 cut(s) 48
Bsp1407I TGTACA 1 cut(s) 293
Bsp143I GATC 2 cut(s) 200, 232
BspANI GGCC 2 cut(s) 46, 183
BspHI TCATGA 1 cut(s) 235
BspLI GGNNCC 3 cut(s) 46, 47, 138
BspPI GGATC 1 cut(s) 208
BsrGI TGTACA 1 cut(s) 293
BssMI GATC 2 cut(s) 200, 232
BstAUI TGTACA 1 cut(s) 293
BstBAI YACGTR 1 cut(s) 268
BstF5I GGATG 1 cut(s) 78
BstKTI GATC 2 cut(s) 203, 235
BstMBI GATC 2 cut(s) 200, 232
BstSLI GKGCMC 1 cut(s) 48
BstX2I RGATCY 1 cut(s) 200
BstYI RGATCY 1 cut(s) 200
BsuRI GGCC 2 cut(s) 46, 183
BtsCI GGATG 1 cut(s) 78
BtsIMutI CAGTG 1 cut(s) 296
CciI TCATGA 1 cut(s) 235
Cfr13I GGNCC 4 cut(s) 44, 45, 136, 167
Csp6I GTAC 2 cut(s) 177, 294
CviAII CATG 4 cut(s) 52, 92, 185, 236
CviJI RGCY 3 cut(s) 46, 124, 183
CviKI_1 RGCY 3 cut(s) 46, 124, 183
CviQI GTAC 2 cut(s) 177, 294
DpnI GATC 2 cut(s) 202, 234
DpnII GATC 2 cut(s) 200, 232
Eco24I GRGCYC 1 cut(s) 48
Eco47I GGWCC 2 cut(s) 136, 167
EcoO109I RGGNCCY 1 cut(s) 45
EcoT38I GRGCYC 1 cut(s) 48
FaeI CATG 4 cut(s) 55, 95, 188, 239
FaiI YATR 8 cut(s) 20, 29, 53, 93, 105, 186, 237, 275
FatI CATG 4 cut(s) 51, 91, 184, 235
FbaI TGATCA 1 cut(s) 232
FokI GGATG 1 cut(s) 85
FriOI GRGCYC 1 cut(s) 48
FspBI CTAG 1 cut(s) 310
HaeIII GGCC 2 cut(s) 46, 183
Hin1II CATG 4 cut(s) 55, 95, 188, 239
HinfI GANTC 1 cut(s) 257
Hpy166II GTNNAC 1 cut(s) 294
Hpy188III TCNNGA 2 cut(s) 70, 236
Hpy8I GTNNAC 1 cut(s) 294
HpyAV CCTTC 1 cut(s) 80
HpyCH4IV ACGT 1 cut(s) 267
HpyCH4V TGCA 1 cut(s) 206
HpySE526I ACGT 1 cut(s) 267
Hsp92II CATG 4 cut(s) 55, 95, 188, 239
Ksp22I TGATCA 1 cut(s) 232
Kzo9I GATC 2 cut(s) 200, 232
LpnPI CCDG 5 cut(s) 27, 55, 165, 174, 234
MaeI CTAG 1 cut(s) 310
MaeII ACGT 1 cut(s) 267
MalI GATC 2 cut(s) 202, 234
MboI GATC 2 cut(s) 200, 232
MboII GAAGA 1 cut(s) 138
MflI RGATCY 1 cut(s) 200
MhlI GDGCHC 1 cut(s) 48
MluCI AATT 3 cut(s) 77, 126, 281
MlyI GAGTC 1 cut(s) 251
MmeI TCCRAC 2 cut(s) 114, 145
MroXI GAANNNNTTC 1 cut(s) 285
NdeII GATC 2 cut(s) 200, 232
NlaIII CATG 4 cut(s) 55, 95, 188, 239
NlaIV GGNNCC 3 cut(s) 46, 47, 138
PagI TCATGA 1 cut(s) 235
PdmI GAANNNNTTC 1 cut(s) 285
PflMI CCANNNNNTGG 1 cut(s) 164
PleI GAGTC 1 cut(s) 251
PpsI GAGTC 1 cut(s) 251
Ppu21I YACGTR 1 cut(s) 268
PsiI TTATAA 1 cut(s) 275
PspN4I GGNNCC 3 cut(s) 46, 47, 138
PspOMI GGGCCC 1 cut(s) 44
PspPI GGNCC 4 cut(s) 44, 45, 136, 167
PsuI RGATCY 1 cut(s) 200
RsaI GTAC 2 cut(s) 178, 295
RsaNI GTAC 2 cut(s) 177, 294
Sau3AI GATC 2 cut(s) 200, 232
Sau96I GGNCC 4 cut(s) 44, 45, 136, 167
SchI GAGTC 1 cut(s) 251
SduI GDGCHC 1 cut(s) 48
SetI ASST 4 cut(s) 91, 163, 172, 270
SinI GGWCC 2 cut(s) 136, 167
Sse9I AATT 3 cut(s) 77, 126, 281
SspMI CTAG 1 cut(s) 310
TaiI ACGT 1 cut(s) 270
TaqI TCGA 3 cut(s) 214, 260, 303
TaqII GACCGA 1 cut(s) 213
TasI AATT 3 cut(s) 77, 126, 281
TatI WGTACW 1 cut(s) 293
TscAI CASTG 1 cut(s) 296
TspDTI ATGAA 5 cut(s) 26, 35, 89, 252, 294
TspRI CASTG 1 cut(s) 296
Van91I CCANNNNNTGG 1 cut(s) 164
VpaK11BI GGWCC 2 cut(s) 136, 167
XapI RAATTY 1 cut(s) 77
XmnI GAANNNNTTC 1 cut(s) 285
XspI CTAG 1 cut(s) 310
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.