Rroxscaffold_1G00045310
NAC Family

Chromatin structure-remodeling complex protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0001340
Physical Location & Seq
Reverse (-)
64308241 .. 64308633
393 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00045310.1

Sequence Viewer

Length: 393 bp
ATGGATTCTAGGCTTCCATTACAAATTGATCAGGCAATGATAGACTTGGATAAGGTAGAAAAGAAGGATGAACTTGGAGTTAATGTCATATTGGCTGCTAAGACGGGAAATGAAGGTGCAATGAAACAATATGAAGAACTTGAAGTTTCCTCTATTATTAACACTACAAATGGTCCTGCTACTATCGATAGTGTGATTAATTCGAAGAAGGGAAATATCAGCAAAGGTGATGATTTTCATATTGTTTCCAGTAGTGATCAAATGAAGCACTTTACTTCAGCATGCGGAAGCATGAGACCAATGGTTAGAGTCAAGCAAGGAGAGCAAGTTAATAGAAAGCCAAATGGATTTGGTCAACACGGCAACTTGGTATCTCGGGCAATGGAGCTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000166 GO:0000228 GO:0000785 GO:0000790 GO:0000988 GO:0000990 GO:0000991 GO:0002831 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005829 GO:0006139 GO:0006325 GO:0006338 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0006950 GO:0006996 GO:0007275 GO:0008026 GO:0008094 GO:0008144 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009611 GO:0009653 GO:0009791 GO:0009889 GO:0009908 GO:0009966 GO:0009987 GO:0010104 GO:0010199 GO:0010467 GO:0010468 GO:0010556 GO:0010646 GO:0010959 GO:0016043 GO:0016070 GO:0016462 GO:0016514 GO:0016586 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017076 GO:0017111 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022414 GO:0023051 GO:0030554 GO:0031323 GO:0031326 GO:0031347 GO:0031974 GO:0031981 GO:0032101 GO:0032392 GO:0032501 GO:0032502 GO:0032508 GO:0032553 GO:0032555 GO:0032559 GO:0032774 GO:0032879 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0034756 GO:0035639 GO:0036094 GO:0040029 GO:0042623 GO:0043044 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043269 GO:0043900 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0048367 GO:0048583 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0048859 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051171 GO:0051252 GO:0051276 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0070035 GO:0070297 GO:0070603 GO:0071103 GO:0071704 GO:0071840 GO:0080090 GO:0080134 GO:0090304 GO:0090567 GO:0090691 GO:0097159 GO:0097367 GO:0097659 GO:0140097 GO:0140110 GO:1900150 GO:1900390 GO:1900393 GO:1900400 GO:1901265 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902494 GO:1902531 GO:1903506 GO:1904949 GO:2000022 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04714 ko05225 map04714 map05225
Pfam Domains
Protein Families
Helicase_C SNF2_N SnAC

Protein Analysis

130

Amino Acids

14.22

Weight (kDa)

6.28

Isoelectric Point (pI)

29.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 285
AcuI CTGAAG 1 cut(s) 261
AgsI TTSAA 1 cut(s) 143
AluBI AGCT 1 cut(s) 388
AluI AGCT 1 cut(s) 388
Alw21I GWGCWC 1 cut(s) 390
Alw26I GTCTC 1 cut(s) 289
Ama87I CYCGRG 1 cut(s) 375
ApeKI GCWGC 1 cut(s) 95
AseI ATTAAT 1 cut(s) 198
AspS9I GGNCC 1 cut(s) 173
AsuHPI GGTGA 1 cut(s) 239
AsuII TTCGAA 1 cut(s) 203
AvaI CYCGRG 1 cut(s) 375
AvaII GGWCC 1 cut(s) 173
BanII GRGCYC 1 cut(s) 390
Bbv12I GWGCWC 1 cut(s) 390
BbvI GCAGC 1 cut(s) 82
BceAI ACGGC 1 cut(s) 376
BclI TGATCA 2 cut(s) 28, 256
BcoDI GTCTC 1 cut(s) 289
BfaI CTAG 2 cut(s) 9, 391
BisI GCNGC 1 cut(s) 96
BlsI GCNGC 1 cut(s) 97
Bme18I GGWCC 1 cut(s) 173
BmeT110I CYCGRG 1 cut(s) 375
BmgT120I GGNCC 1 cut(s) 173
Bpu14I TTCGAA 1 cut(s) 203
Bsa29I ATCGAT 1 cut(s) 186
BsaI GGTCTC 1 cut(s) 289
BsaXI ACNNNNNCTCC 4 cut(s) 69, 99, 312, 342
Bse1I ACTGG 1 cut(s) 249
Bse3DI GCAATG 3 cut(s) 42, 126, 387
BseCI ATCGAT 1 cut(s) 186
BseGI GGATG 1 cut(s) 73
BseMI GCAATG 3 cut(s) 42, 126, 387
BseNI ACTGG 1 cut(s) 249
BseXI GCAGC 1 cut(s) 82
BshVI ATCGAT 1 cut(s) 186
BsiHKAI GWGCWC 1 cut(s) 390
BsiHKCI CYCGRG 1 cut(s) 375
BsmAI GTCTC 1 cut(s) 289
Bso31I GGTCTC 1 cut(s) 289
BsoBI CYCGRG 1 cut(s) 375
Bsp119I TTCGAA 1 cut(s) 203
Bsp1286I GDGCHC 1 cut(s) 390
Bsp143I GATC 2 cut(s) 28, 256
BspACI CCGC 1 cut(s) 285
BspDI ATCGAT 1 cut(s) 186
BspT104I TTCGAA 1 cut(s) 203
BspTNI GGTCTC 1 cut(s) 289
BsrDI GCAATG 3 cut(s) 42, 126, 387
BsrI ACTGG 1 cut(s) 249
BssMI GATC 2 cut(s) 28, 256
BstBI TTCGAA 1 cut(s) 203
BstC8I GCNNGC 1 cut(s) 283
BstDEI CTNAG 1 cut(s) 99
BstF5I GGATG 1 cut(s) 73
BstKTI GATC 2 cut(s) 31, 259
BstMAI GTCTC 1 cut(s) 289
BstMBI GATC 2 cut(s) 28, 256
BstMWI GCNNNNNNNGC 1 cut(s) 322
BstNSI RCATGY 1 cut(s) 285
BstV1I GCAGC 1 cut(s) 82
Bsu15I ATCGAT 1 cut(s) 186
BsuTUI ATCGAT 1 cut(s) 186
BtsCI GGATG 1 cut(s) 73
Cac8I GCNNGC 1 cut(s) 283
Cfr13I GGNCC 1 cut(s) 173
ClaI ATCGAT 1 cut(s) 186
CviAII CATG 2 cut(s) 282, 292
CviJI RGCY 4 cut(s) 13, 95, 340, 388
CviKI_1 RGCY 4 cut(s) 13, 95, 340, 388
DdeI CTNAG 1 cut(s) 99
DpnI GATC 2 cut(s) 30, 258
DpnII GATC 2 cut(s) 28, 256
Ecl136II GAGCTC 1 cut(s) 388
Eco24I GRGCYC 1 cut(s) 390
Eco31I GGTCTC 1 cut(s) 289
Eco47I GGWCC 1 cut(s) 173
Eco53kI GAGCTC 1 cut(s) 388
Eco57I CTGAAG 1 cut(s) 261
Eco88I CYCGRG 1 cut(s) 375
EcoICRI GAGCTC 1 cut(s) 388
EcoT38I GRGCYC 1 cut(s) 390
FaeI CATG 2 cut(s) 285, 295
FaiI YATR 5 cut(s) 89, 132, 240, 283, 293
FatI CATG 2 cut(s) 281, 291
FbaI TGATCA 2 cut(s) 28, 256
Fnu4HI GCNGC 1 cut(s) 96
FokI GGATG 1 cut(s) 80
FriOI GRGCYC 1 cut(s) 390
Fsp4HI GCNGC 1 cut(s) 96
FspBI CTAG 2 cut(s) 9, 391
GluI GCNGC 1 cut(s) 96
Hin1II CATG 2 cut(s) 285, 295
HincII GTYRAC 1 cut(s) 356
HindII GTYRAC 1 cut(s) 356
HinfI GANTC 2 cut(s) 5, 309
HphI GGTGA 1 cut(s) 239
Hpy166II GTNNAC 1 cut(s) 356
Hpy8I GTNNAC 1 cut(s) 356
HpyAV CCTTC 3 cut(s) 58, 107, 202
HpyCH4V TGCA 1 cut(s) 119
HpyF10VI GCNNNNNNNGC 1 cut(s) 322
HpyF3I CTNAG 1 cut(s) 99
Hsp92II CATG 2 cut(s) 285, 295
Ksp22I TGATCA 2 cut(s) 28, 256
Kzo9I GATC 2 cut(s) 28, 256
LmnI GCTCC 1 cut(s) 385
LpnPI CCDG 3 cut(s) 17, 189, 262
Lsp1109I GCAGC 1 cut(s) 82
MaeI CTAG 2 cut(s) 9, 391
MalI GATC 2 cut(s) 30, 258
MboI GATC 2 cut(s) 28, 256
MboII GAAGA 2 cut(s) 146, 217
MhlI GDGCHC 1 cut(s) 390
MluCI AATT 2 cut(s) 24, 199
MlyI GAGTC 1 cut(s) 318
MnlI CCTC 1 cut(s) 160
MseI TTAA 4 cut(s) 81, 159, 198, 330
MwoI GCNNNNNNNGC 1 cut(s) 322
NdeII GATC 2 cut(s) 28, 256
NlaIII CATG 2 cut(s) 285, 295
NspI RCATGY 1 cut(s) 285
NspV TTCGAA 1 cut(s) 203
PaeI GCATGC 1 cut(s) 285
PfeI GAWTC 1 cut(s) 5
PkrI GCNGC 1 cut(s) 97
PleI GAGTC 1 cut(s) 317
PpsI GAGTC 1 cut(s) 317
PshBI ATTAAT 1 cut(s) 198
Psp124BI GAGCTC 1 cut(s) 390
PspPI GGNCC 1 cut(s) 173
SacI GAGCTC 1 cut(s) 390
SaqAI TTAA 4 cut(s) 81, 159, 198, 330
SatI GCNGC 1 cut(s) 96
Sau3AI GATC 2 cut(s) 28, 256
Sau96I GGNCC 1 cut(s) 173
SchI GAGTC 1 cut(s) 318
SduI GDGCHC 1 cut(s) 390
SetI ASST 4 cut(s) 57, 118, 229, 390
SfuI TTCGAA 1 cut(s) 203
SinI GGWCC 1 cut(s) 173
SphI GCATGC 1 cut(s) 285
Sse9I AATT 2 cut(s) 24, 199
SsiI CCGC 1 cut(s) 285
SspMI CTAG 2 cut(s) 9, 391
SstI GAGCTC 1 cut(s) 390
TaqI TCGA 2 cut(s) 186, 203
TasI AATT 2 cut(s) 24, 199
TfiI GAWTC 1 cut(s) 5
Tru1I TTAA 4 cut(s) 81, 159, 198, 330
Tru9I TTAA 4 cut(s) 81, 159, 198, 330
TseI GCWGC 1 cut(s) 95
TspDTI ATGAA 6 cut(s) 84, 126, 137, 147, 227, 278
VpaK11BI GGWCC 1 cut(s) 173
VspI ATTAAT 1 cut(s) 198
XceI RCATGY 1 cut(s) 285
XspI CTAG 2 cut(s) 9, 391
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.