Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0033466.1

Orthogroup ID

OG0001340

Physical Location & Seq

Genomic Coordinates Forward (+)

67 .. 668

Gene Structure 602 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0033466.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 602 bp

atggcttgtgatcaggtggccaatgttgggattcatatgactgatgaagacatagttgtctctgttcttcttggtttgccatcaaactatactaccatgaaaactataatcagggctaagcataacctcatttcaatgcaagagttaaggtctcttttgctcattgctgaagttgaacttgaagaggttgacaagtctatttccttgccttccaatactgaaatcgtagcacaaggtgataatttcagagggactactactacaccaactcatgttacagatgccaaatatgatgttactaccttgatgcctccaagtactgttgcctatttaaggtacatgaatgctccttatgtcattgcatctgttcctacaatgacttctccatatgctgcaaatactgtagtacagaataagaactccattatgcaacttttgccgacccatgatcccatattcaatcaatggtatgttcaaccacaaggagattctggatatgcttacaatactggtgaaagtcgatacaatgaagcattcaatcaaaatgagggtctcatgcaacaacatggttttggtttctcacaacagaatgaaggtttctc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_2 gag_pre-integrs rve

Protein Analysis

201

Amino Acids

22.32

Weight (kDa)

4.74

Isoelectric Point (pI)

40.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001340)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g05651 FvH4_5g06481
malus_domestica	MD04G1150100.v1.1
rosa_chinensis	RchiOBHm_Chr1g0366871 RchiOBHm_Chr2g0112811 RchiOBHm_Chr5g0022021 RchiOBHm_Chr5g0050161 RchiOBHm_Chr7g0178931
rosa_laevigata	RLG00000030270 RLG00000030274 RLG00000030285 RLG00000030289
rosa_multiflora	Rmu_sc0000206.1_g000011 Rmu_sc0000539.1_g000041 Rmu_sc0001706.1_g000020 Rmu_sc0002245.1_g000029 Rmu_sc0002935.1_g000016 Rmu_sc0002952.1_g000016 Rmu_sc0002952.1_g000017 Rmu_sc0003371.1_g000005 Rmu_sc0004193.1_g000005 Rmu_sc0004359.1_g000018 Rmu_sc0006422.1_g000014 Rmu_sc0007594.1_g000001 Rmu_sc0010925.1_g000018 Rmu_sc0013146.1_g000003 Rmu_sc0031630.1_g000002 Rmu_sc0033466.1_g000001 Rmu_ssc0000079.1_g000006 Rmu_ssc0000423.1_g000006
rosa_roxburghii	Rroxscaffold_1G00004520 Rroxscaffold_1G00005520 Rroxscaffold_1G00041540 Rroxscaffold_1G00045310 Rroxscaffold_5G00361650 Rroxscaffold_6G00388920 Rroxscaffold_6G00405980 Rroxscaffold_6G00410140 Rroxscaffold_6G00423840 Rroxscaffold_7G00200050
rosa_rugosa	Rorug02G0433500 Rorug02G0433600 Rorug02G0433600 Rorug02G0433700 Rorug04G0166100.1 Rorug05G0053500 Rorug06G0481300
rosa_samantha	Rh1CG036200 Rh4AG051700 Rh4BG049000 Rh4CG055700
rosa_wichuraiana	Rw0G022690 Rw1G035930 Rw4G004120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	56
AclWI	GGATC	1 cut(s)	443
AcoI	YGGCCR	1 cut(s)	18
AcuI	CTGAAG	1 cut(s)	189
AdeI	CACNNNGTG	1 cut(s)	236
AfaI	GTAC	3 cut(s)	319, 338, 408
AfiI	CCNNNNNNNGG	2 cut(s)	27, 333
AgsI	TTSAA	6 cut(s)	135, 176, 182, 460, 476, 538
Alw26I	GTCTC	3 cut(s)	64, 156, 557
AlwI	GGATC	1 cut(s)	443
AoxI	GGCC	1 cut(s)	18
ApeKI	GCWGC	1 cut(s)	392
ArsI	GACNNNNNNTTYG	2 cut(s)	535, 567
AsuHPI	GGTGA	2 cut(s)	248, 524
BalI	TGGCCA	1 cut(s)	20
BbsI	GAAGAC	1 cut(s)	54
BbvI	GCAGC	1 cut(s)	379
BccI	CCATC	1 cut(s)	88
BclI	TGATCA	1 cut(s)	10
BcoDI	GTCTC	3 cut(s)	64, 156, 557
BfmI	CTRYAG	1 cut(s)	402
BisI	GCNGC	1 cut(s)	393
BlpI	GCTNAGC	1 cut(s)	117
BlsI	GCNGC	1 cut(s)	394
BmcAI	AGTACT	1 cut(s)	319
BmsI	GCATC	3 cut(s)	271, 297, 371
BpiI	GAAGAC	1 cut(s)	54
Bpu1102I	GCTNAGC	1 cut(s)	117
BsaI	GGTCTC	2 cut(s)	156, 557
Bsc4I	CCNNNNNNNGG	2 cut(s)	27, 333
Bse1I	ACTGG	1 cut(s)	514
Bse3DI	GCAATG	2 cut(s)	162, 357
BseLI	CCNNNNNNNGG	2 cut(s)	27, 333
BseMI	GCAATG	2 cut(s)	162, 357
BseNI	ACTGG	1 cut(s)	514
BseXI	GCAGC	1 cut(s)	379
BshFI	GGCC	1 cut(s)	20
BslFI	GGGAC	1 cut(s)	265
BslI	CCNNNNNNNGG	2 cut(s)	27, 333
BsmAI	GTCTC	3 cut(s)	64, 156, 557
BsmFI	GGGAC	1 cut(s)	265
BsmI	GAATGC	2 cut(s)	349, 533
BsnI	GGCC	1 cut(s)	20
Bso31I	GGTCTC	2 cut(s)	156, 557
Bsp143I	GATC	2 cut(s)	10, 448
Bsp1720I	GCTNAGC	1 cut(s)	117
BspANI	GGCC	1 cut(s)	20
BspPI	GGATC	1 cut(s)	443
BspTNI	GGTCTC	2 cut(s)	156, 557
BsrDI	GCAATG	2 cut(s)	162, 357
BsrI	ACTGG	1 cut(s)	514
BssMI	GATC	2 cut(s)	10, 448
Bst4CI	ACNGT	2 cut(s)	322, 403
Bst6I	CTCTTC	1 cut(s)	177
BstAPI	GCANNNNNTGC	1 cut(s)	436
BstDEI	CTNAG	1 cut(s)	117
BstENI	CCTNNNNNAGG	1 cut(s)	331
BstKTI	GATC	2 cut(s)	13, 451
BstMAI	GTCTC	3 cut(s)	64, 156, 557
BstMBI	GATC	2 cut(s)	10, 448
BstMWI	GCNNNNNNNGC	1 cut(s)	436
BstSFI	CTRYAG	1 cut(s)	402
BstV1I	GCAGC	1 cut(s)	379
BstV2I	GAAGAC	1 cut(s)	54
BsuRI	GGCC	1 cut(s)	20
Csp6I	GTAC	3 cut(s)	318, 337, 407
CviAII	CATG	6 cut(s)	97, 272, 340, 446, 556, 566
CviJI	RGCY	3 cut(s)	5, 20, 116
CviKI_1	RGCY	3 cut(s)	5, 20, 116
CviQI	GTAC	3 cut(s)	318, 337, 407
DdeI	CTNAG	1 cut(s)	117
DpnI	GATC	2 cut(s)	12, 450
DpnII	GATC	2 cut(s)	10, 448
DraIII	CACNNNGTG	1 cut(s)	236
DrdI	GACNNNNNNGTC	1 cut(s)	56
DseDI	GACNNNNNNGTC	1 cut(s)	56
EaeI	YGGCCR	1 cut(s)	18
Eam1104I	CTCTTC	1 cut(s)	177
EarI	CTCTTC	1 cut(s)	177
Eco31I	GGTCTC	2 cut(s)	156, 557
Eco57I	CTGAAG	1 cut(s)	189
EcoNI	CCTNNNNNAGG	1 cut(s)	331
FaeI	CATG	6 cut(s)	100, 275, 343, 449, 559, 569
FalI	AAGNNNNNCTT	2 cut(s)	162, 194
FaqI	GGGAC	1 cut(s)	265
FatI	CATG	6 cut(s)	96, 271, 339, 445, 555, 565
FauNDI	CATATG	2 cut(s)	36, 388
FbaI	TGATCA	1 cut(s)	10
Fnu4HI	GCNGC	1 cut(s)	393
Fsp4HI	GCNGC	1 cut(s)	393
GluI	GCNGC	1 cut(s)	393
HaeIII	GGCC	1 cut(s)	20
Hin1II	CATG	6 cut(s)	100, 275, 343, 449, 559, 569
HincII	GTYRAC	1 cut(s)	190
HindII	GTYRAC	1 cut(s)	190
HinfI	GANTC	2 cut(s)	31, 488
HphI	GGTGA	2 cut(s)	248, 524
Hpy166II	GTNNAC	1 cut(s)	190
Hpy188I	TCNGA	1 cut(s)	248
Hpy188III	TCNNGA	1 cut(s)	492
Hpy8I	GTNNAC	1 cut(s)	190
HpyAV	CCTTC	2 cut(s)	219, 587
HpyCH4III	ACNGT	2 cut(s)	322, 403
HpyCH4V	TGCA	5 cut(s)	139, 362, 395, 430, 559
HpyF10VI	GCNNNNNNNGC	1 cut(s)	436
HpyF3I	CTNAG	1 cut(s)	117
Hsp92II	CATG	6 cut(s)	100, 275, 343, 449, 559, 569
Ksp22I	TGATCA	1 cut(s)	10
Kzo9I	GATC	2 cut(s)	10, 448
LmnI	GCTCC	1 cut(s)	352
LpnPI	CCDG	3 cut(s)	97, 477, 495
Lsp1109I	GCAGC	1 cut(s)	379
LweI	GCATC	3 cut(s)	271, 297, 371
MaeIII	GTNAC	2 cut(s)	274, 295
MalI	GATC	2 cut(s)	12, 450
MboI	GATC	2 cut(s)	10, 448
MboII	GAAGA	3 cut(s)	59, 59, 194
MlsI	TGGCCA	1 cut(s)	20
MluCI	AATT	1 cut(s)	241
MluNI	TGGCCA	1 cut(s)	20
MnlI	CCTC	5 cut(s)	137, 178, 242, 321, 541
Mox20I	TGGCCA	1 cut(s)	20
MscI	TGGCCA	1 cut(s)	20
MseI	TTAA	2 cut(s)	146, 332
MslI	CAYNNNNRTG	1 cut(s)	134
Msp20I	TGGCCA	1 cut(s)	20
Mva1269I	GAATGC	2 cut(s)	349, 533
MwoI	GCNNNNNNNGC	1 cut(s)	436
NdeI	CATATG	2 cut(s)	36, 388
NdeII	GATC	2 cut(s)	10, 448
NlaIII	CATG	6 cut(s)	100, 275, 343, 449, 559, 569
PctI	GAATGC	2 cut(s)	349, 533
PfeI	GAWTC	2 cut(s)	31, 488
PkrI	GCNGC	1 cut(s)	394
RsaI	GTAC	3 cut(s)	319, 338, 408
RsaNI	GTAC	3 cut(s)	318, 337, 407
RseI	CAYNNNNRTG	1 cut(s)	134
SaqAI	TTAA	2 cut(s)	146, 332
SatI	GCNGC	1 cut(s)	393
Sau3AI	GATC	2 cut(s)	10, 448
ScaI	AGTACT	1 cut(s)	319
SetI	ASST	8 cut(s)	18, 129, 152, 189, 238, 305, 338, 598
SfaNI	GCATC	3 cut(s)	271, 297, 371
SfcI	CTRYAG	1 cut(s)	402
SmiMI	CAYNNNNRTG	1 cut(s)	134
Sse9I	AATT	1 cut(s)	241
TaaI	ACNGT	2 cut(s)	322, 403
TaqI	TCGA	1 cut(s)	520
TasI	AATT	1 cut(s)	241
TatI	WGTACW	2 cut(s)	317, 406
TfiI	GAWTC	2 cut(s)	31, 488
Tru1I	TTAA	2 cut(s)	146, 332
Tru9I	TTAA	2 cut(s)	146, 332
TseI	GCWGC	1 cut(s)	392
TspDTI	ATGAA	5 cut(s)	23, 60, 113, 356, 543
XagI	CCTNNNNNAGG	1 cut(s)	331
ZrmI	AGTACT	1 cut(s)	319

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.