Rh4AG051700
NAC Family

Chromatin structure-remodeling complex protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0001340
Physical Location & Seq
Reverse (-)
10823785 .. 10835742
11958 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG051700.1

Sequence Viewer

Length: 999 bp
ATGGTTCAAGTTCTAATGAGATGCCAGCTTCGTCACATAATGTTTGAGTTGGAAGCAACCAAGTTTCTGCACAAACTCATTCAGGACTCTACAGATGAGCCGGCCAAACTTGCCACCAAGCTCTTGAAAGCTAGAGGGTCTTCCCAGGCTGCTGGAGTTGCAAAAGATTCCAATTCGGGTTTGGCCGAAACTGAGGTGTCTAAGATGGACCCATTTGCTTCAAGTAGACCACCTGCTGGACCTATCCGTACAGGGCATGACCATTATCAAGGATCTGCAACCCATCGAAGTAGTCAGTCTTTTGATCATGAAACTCCATCTAGTTTAGACTCTAGGTCTGCCAATTCACAGTCCCAAGAAAGAAAACCTCTAGAGGAGGTGGAATGTGAGGTTAAAGTTGGTAATACTTCTCAAGTTAATGAGTCATTTCCGGCAAATGTGTCTGAAAACCTTGATTTCCGTCCCTCTTCTGAAGCTAAAGTTGGATCTCTTCTGAAAGCTAAAGCTGGTGATGTCTCTGACGTTTGTGAGACATTGACAGAAGTTGTACCTGAAAACATGGATTTGCTGCCATCTTCAACAGGGCAGAAGTCGGAATCAGAAGCTATATTTGGAGTTGCTTCTCAGGTACGTGAGACAGTGTCAAAAATTGTATCTGAAAACATAGAGTTGCGGCTATCTTCAACAGTGCAGGAGTTGGAATCTGAAGAAGTTGATGGGTCTCAGGTTTGTGAGACACTGTTGGAATTTGTACCTGAGAACATGGATTTGCAGCCATCTTCAACAGTGCAGGAGTCGGAATCTGAAACTAGAGGTGGTGAGGCTTCTCAGGTTAGCAAAACATTGCCGGAGTCTGAAAACATGGATTTGCATACATTGGCAACAGCATGTGACTCAGTATCTGCAGCTAAAGCTGGTGAGGTGTCTCAGTTTAGTGAAGCATTGATTAAGTCTGGAAACATGGATTTGCAAACATCTTCAACAGCACAGGAATCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000166 GO:0000228 GO:0000785 GO:0000790 GO:0000988 GO:0000990 GO:0000991 GO:0002831 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005829 GO:0006139 GO:0006325 GO:0006338 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0006950 GO:0006996 GO:0007275 GO:0008026 GO:0008094 GO:0008144 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009611 GO:0009653 GO:0009791 GO:0009889 GO:0009908 GO:0009966 GO:0009987 GO:0010104 GO:0010199 GO:0010467 GO:0010468 GO:0010556 GO:0010646 GO:0010959 GO:0016043 GO:0016070 GO:0016462 GO:0016514 GO:0016586 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017076 GO:0017111 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022414 GO:0023051 GO:0030554 GO:0031323 GO:0031326 GO:0031347 GO:0031974 GO:0031981 GO:0032101 GO:0032392 GO:0032501 GO:0032502 GO:0032508 GO:0032553 GO:0032555 GO:0032559 GO:0032774 GO:0032879 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0034756 GO:0035639 GO:0036094 GO:0040029 GO:0042623 GO:0043044 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043269 GO:0043900 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0048367 GO:0048583 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0048859 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051171 GO:0051252 GO:0051276 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0070035 GO:0070297 GO:0070603 GO:0071103 GO:0071704 GO:0071840 GO:0080090 GO:0080134 GO:0090304 GO:0090567 GO:0090691 GO:0097159 GO:0097367 GO:0097659 GO:0140097 GO:0140110 GO:1900150 GO:1900390 GO:1900393 GO:1900400 GO:1901265 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902494 GO:1902531 GO:1903506 GO:1904949 GO:2000022 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04714 ko05225 map04714 map05225
Pfam Domains
Protein Families
Helicase_C SNF2_N SnAC

Protein Analysis

332

Amino Acids

35.74

Weight (kDa)

4.64

Isoelectric Point (pI)

63.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 241
Acc36I ACCTGC 1 cut(s) 241
AccB7I CCANNNNNTGG 1 cut(s) 236
AccI GTMKAC 1 cut(s) 226
AciI CCGC 1 cut(s) 673
AclWI GGATC 2 cut(s) 280, 493
AcoI YGGCCR 2 cut(s) 102, 183
AcsI RAATTY 1 cut(s) 746
AcuI CTGAAG 2 cut(s) 492, 726
AfaI GTAC 4 cut(s) 250, 549, 630, 753
AfiI CCNNNNNNNGG 1 cut(s) 236
AgsI TTSAA 7 cut(s) 8, 127, 222, 579, 684, 783, 981
AhdI GACNNNNNGTC 1 cut(s) 334
AjnI CCWGG 1 cut(s) 144
AjuI GAANNNNNNNTTGG 4 cut(s) 465, 497, 594, 626
AluBI AGCT 9 cut(s) 28, 121, 131, 476, 500, 506, 605, 908, 914
AluI AGCT 9 cut(s) 28, 121, 131, 476, 500, 506, 605, 908, 914
Alw26I GTCTC 6 cut(s) 520, 524, 629, 726, 728, 930
AlwI GGATC 2 cut(s) 280, 493
AlwNI CAGNNNCTG 1 cut(s) 902
AoxI GGCC 2 cut(s) 102, 183
ApeKI GCWGC 4 cut(s) 149, 568, 772, 905
ApoI RAATTY 1 cut(s) 746
AspS9I GGNCC 2 cut(s) 208, 239
AsuHPI GGTGA 3 cut(s) 521, 830, 929
AvaII GGWCC 2 cut(s) 208, 239
BbsI GAAGAC 1 cut(s) 132
BbvI GCAGC 4 cut(s) 136, 555, 784, 917
BccI CCATC 6 cut(s) 199, 291, 325, 580, 710, 784
BciT130I CCWGG 1 cut(s) 146
BclI TGATCA 1 cut(s) 304
BcoDI GTCTC 6 cut(s) 520, 524, 629, 726, 728, 930
BfaI CTAG 5 cut(s) 132, 321, 333, 371, 810
BfmI CTRYAG 2 cut(s) 90, 903
BfuAI ACCTGC 1 cut(s) 241
BisI GCNGC 5 cut(s) 150, 569, 674, 773, 906
BlsI GCNGC 5 cut(s) 151, 570, 675, 774, 907
Bme1390I CCNGG 1 cut(s) 146
Bme18I GGWCC 2 cut(s) 208, 239
BmeRI GACNNNNNGTC 1 cut(s) 334
BmgT120I GGNCC 2 cut(s) 208, 239
BmiI GGNNCC 1 cut(s) 210
BmrFI CCNGG 1 cut(s) 146
BmsI GCATC 1 cut(s) 11
BpiI GAAGAC 1 cut(s) 132
BpmI CTGGAG 1 cut(s) 174
BpuEI CTTGAG 1 cut(s) 396
BsaAI YACGTR 1 cut(s) 632
BsaI GGTCTC 1 cut(s) 726
BsaJI CCNNGG 1 cut(s) 144
Bsc4I CCNNNNNNNGG 1 cut(s) 236
Bse118I RCCGGY 1 cut(s) 100
Bse3DI GCAATG 1 cut(s) 842
BseBI CCWGG 1 cut(s) 146
BseDI CCNNGG 1 cut(s) 144
BseLI CCNNNNNNNGG 1 cut(s) 236
BseMI GCAATG 1 cut(s) 842
BseMII CTCAG 7 cut(s) 183, 638, 737, 747, 842, 909, 941
BseRI GAGGAG 1 cut(s) 389
BseXI GCAGC 4 cut(s) 136, 555, 784, 917
BsgI GTGCAG 3 cut(s) 53, 710, 809
BshFI GGCC 2 cut(s) 104, 185
BsiSI CCGG 3 cut(s) 101, 431, 848
BslFI GGGAC 2 cut(s) 337, 447
BslI CCNNNNNNNGG 1 cut(s) 236
BsmAI GTCTC 6 cut(s) 520, 524, 629, 726, 728, 930
BsmFI GGGAC 2 cut(s) 337, 447
BsnI GGCC 2 cut(s) 104, 185
Bso31I GGTCTC 1 cut(s) 726
Bsp143I GATC 3 cut(s) 272, 304, 485
BspACI CCGC 1 cut(s) 673
BspANI GGCC 2 cut(s) 104, 185
BspCNI CTCAG 7 cut(s) 184, 637, 736, 748, 841, 908, 940
BspHI TCATGA 1 cut(s) 307
BspLI GGNNCC 1 cut(s) 210
BspMAI CTGCAG 1 cut(s) 907
BspMI ACCTGC 1 cut(s) 241
BspPI GGATC 2 cut(s) 280, 493
BspTNI GGTCTC 1 cut(s) 726
BsrDI GCAATG 1 cut(s) 842
BsrFI RCCGGY 1 cut(s) 100
BssAI RCCGGY 1 cut(s) 100
BssECI CCNNGG 1 cut(s) 144
BssMI GATC 3 cut(s) 272, 304, 485
Bst2UI CCWGG 1 cut(s) 146
Bst4CI ACNGT 5 cut(s) 351, 640, 688, 741, 787
Bst6I CTCTTC 2 cut(s) 472, 495
BstBAI YACGTR 1 cut(s) 632
BstC8I GCNNGC 2 cut(s) 26, 102
BstDEI CTNAG 8 cut(s) 192, 201, 624, 723, 756, 828, 895, 927
BstKTI GATC 3 cut(s) 275, 307, 488
BstMAI GTCTC 6 cut(s) 520, 524, 629, 726, 728, 930
BstMBI GATC 3 cut(s) 272, 304, 485
BstMWI GCNNNNNNNGC 3 cut(s) 110, 158, 911
BstNI CCWGG 1 cut(s) 146
BstNSI RCATGY 1 cut(s) 891
BstSCI CCNGG 1 cut(s) 144
BstSFI CTRYAG 2 cut(s) 90, 903
BstV1I GCAGC 4 cut(s) 136, 555, 784, 917
BstV2I GAAGAC 1 cut(s) 132
BstX2I RGATCY 2 cut(s) 272, 485
BstXI CCANNNNNNTGG 1 cut(s) 152
BstYI RGATCY 2 cut(s) 272, 485
BsuRI GGCC 2 cut(s) 104, 185
BtsIMutI CAGTG 4 cut(s) 645, 693, 737, 792
BveI ACCTGC 1 cut(s) 241
Cac8I GCNNGC 2 cut(s) 26, 102
CaiI CAGNNNCTG 1 cut(s) 902
CciI TCATGA 1 cut(s) 307
Cfr10I RCCGGY 1 cut(s) 100
Cfr13I GGNCC 2 cut(s) 208, 239
Csp6I GTAC 4 cut(s) 249, 548, 629, 752
CviAII CATG 7 cut(s) 257, 308, 559, 763, 862, 888, 961
CviQI GTAC 4 cut(s) 249, 548, 629, 752
DdeI CTNAG 8 cut(s) 192, 201, 624, 723, 756, 828, 895, 927
DpnI GATC 3 cut(s) 274, 306, 487
DpnII GATC 3 cut(s) 272, 304, 485
DriI GACNNNNNGTC 1 cut(s) 334
EaeI YGGCCR 2 cut(s) 102, 183
Eam1104I CTCTTC 2 cut(s) 472, 495
Eam1105I GACNNNNNGTC 1 cut(s) 334
EarI CTCTTC 2 cut(s) 472, 495
Eco31I GGTCTC 1 cut(s) 726
Eco47I GGWCC 2 cut(s) 208, 239
Eco57I CTGAAG 2 cut(s) 492, 726
EcoRII CCWGG 1 cut(s) 144
FaeI CATG 7 cut(s) 260, 311, 562, 766, 865, 891, 964
FaqI GGGAC 2 cut(s) 337, 447
FatI CATG 7 cut(s) 256, 307, 558, 762, 861, 887, 960
FbaI TGATCA 1 cut(s) 304
FblI GTMKAC 1 cut(s) 226
Fnu4HI GCNGC 5 cut(s) 150, 569, 674, 773, 906
Fsp4HI GCNGC 5 cut(s) 150, 569, 674, 773, 906
FspBI CTAG 5 cut(s) 132, 321, 333, 371, 810
GluI GCNGC 5 cut(s) 150, 569, 674, 773, 906
GsuI CTGGAG 1 cut(s) 174
HaeIII GGCC 2 cut(s) 104, 185
HapII CCGG 3 cut(s) 101, 431, 848
Hin1II CATG 7 cut(s) 260, 311, 562, 766, 865, 891, 964
HpaII CCGG 3 cut(s) 101, 431, 848
HphI GGTGA 3 cut(s) 521, 830, 929
Hpy166II GTNNAC 1 cut(s) 227
Hpy188III TCNNGA 5 cut(s) 83, 124, 308, 371, 954
Hpy8I GTNNAC 1 cut(s) 227
HpyCH4III ACNGT 5 cut(s) 351, 640, 688, 741, 787
HpyCH4IV ACGT 2 cut(s) 522, 631
HpyCH4V TGCA 9 cut(s) 70, 161, 278, 691, 772, 790, 871, 905, 970
HpyF10VI GCNNNNNNNGC 3 cut(s) 110, 158, 911
HpyF3I CTNAG 8 cut(s) 192, 201, 624, 723, 756, 828, 895, 927
HpySE526I ACGT 2 cut(s) 522, 631
Hsp92II CATG 7 cut(s) 260, 311, 562, 766, 865, 891, 964
KroI GCCGGC 1 cut(s) 100
KroNI GCCGGC 1 cut(s) 102
Ksp22I TGATCA 1 cut(s) 304
Kzo9I GATC 3 cut(s) 272, 304, 485
Lsp1109I GCAGC 4 cut(s) 136, 555, 784, 917
LweI GCATC 1 cut(s) 11
MaeI CTAG 5 cut(s) 132, 321, 333, 371, 810
MaeII ACGT 2 cut(s) 522, 631
MaeIII GTNAC 2 cut(s) 32, 890
MalI GATC 3 cut(s) 274, 306, 487
MboI GATC 3 cut(s) 272, 304, 485
MboII GAAGA 8 cut(s) 132, 459, 482, 567, 672, 719, 771, 969
MflI RGATCY 2 cut(s) 272, 485
MluCI AATT 4 cut(s) 172, 343, 648, 746
MlyI GAGTC 6 cut(s) 80, 323, 431, 803, 860, 887
MmeI TCCRAC 6 cut(s) 30, 463, 573, 678, 723, 777
MroNI GCCGGC 1 cut(s) 100
MseI TTAA 3 cut(s) 393, 417, 948
MspI CCGG 3 cut(s) 101, 431, 848
MspR9I CCNGG 1 cut(s) 146
MvaI CCWGG 1 cut(s) 146
MwoI GCNNNNNNNGC 3 cut(s) 110, 158, 911
NaeI GCCGGC 1 cut(s) 102
NdeII GATC 3 cut(s) 272, 304, 485
NgoMIV GCCGGC 1 cut(s) 100
NlaIII CATG 7 cut(s) 260, 311, 562, 766, 865, 891, 964
NlaIV GGNNCC 1 cut(s) 210
NmuCI GTSAC 2 cut(s) 32, 890
NspI RCATGY 1 cut(s) 891
PagI TCATGA 1 cut(s) 307
PaqCI CACCTGC 1 cut(s) 241
PdiI GCCGGC 1 cut(s) 102
PfeI GAWTC 5 cut(s) 167, 596, 701, 800, 992
PflFI GACNNNGTC 1 cut(s) 640
PflMI CCANNNNNTGG 1 cut(s) 236
PkrI GCNGC 5 cut(s) 151, 570, 675, 774, 907
PleI GAGTC 6 cut(s) 80, 323, 430, 802, 859, 887
PpsI GAGTC 6 cut(s) 80, 323, 430, 802, 859, 887
Ppu21I YACGTR 1 cut(s) 632
Psp6I CCWGG 1 cut(s) 144
PspGI CCWGG 1 cut(s) 144
PspN4I GGNNCC 1 cut(s) 210
PspPI GGNCC 2 cut(s) 208, 239
PstI CTGCAG 1 cut(s) 907
PstNI CAGNNNCTG 1 cut(s) 902
PsuI RGATCY 2 cut(s) 272, 485
PsyI GACNNNGTC 1 cut(s) 640
RsaI GTAC 4 cut(s) 250, 549, 630, 753
RsaNI GTAC 4 cut(s) 249, 548, 629, 752
SaqAI TTAA 3 cut(s) 393, 417, 948
SatI GCNGC 5 cut(s) 150, 569, 674, 773, 906
Sau3AI GATC 3 cut(s) 272, 304, 485
Sau96I GGNCC 2 cut(s) 208, 239
SchI GAGTC 6 cut(s) 80, 323, 431, 803, 860, 887
ScrFI CCNGG 1 cut(s) 146
SfaNI GCATC 1 cut(s) 11
SfcI CTRYAG 2 cut(s) 90, 903
SinI GGWCC 2 cut(s) 208, 239
SmlI CTYRAG 1 cut(s) 411
SmoI CTYRAG 1 cut(s) 411
Sse9I AATT 4 cut(s) 172, 343, 648, 746
SsiI CCGC 1 cut(s) 673
SspMI CTAG 5 cut(s) 132, 321, 333, 371, 810
StyD4I CCNGG 1 cut(s) 144
TaaI ACNGT 5 cut(s) 351, 640, 688, 741, 787
TaiI ACGT 2 cut(s) 525, 634
TaqI TCGA 1 cut(s) 286
TasI AATT 4 cut(s) 172, 343, 648, 746
TauI GCSGC 1 cut(s) 676
TfiI GAWTC 5 cut(s) 167, 596, 701, 800, 992
Tru1I TTAA 3 cut(s) 393, 417, 948
Tru9I TTAA 3 cut(s) 393, 417, 948
TscAI CASTG 4 cut(s) 645, 693, 744, 792
TseFI GTSAC 2 cut(s) 32, 890
TseI GCWGC 4 cut(s) 149, 568, 772, 905
Tsp45I GTSAC 2 cut(s) 32, 890
TspDTI ATGAA 1 cut(s) 324
TspGWI ACGGA 2 cut(s) 236, 449
TspRI CASTG 4 cut(s) 645, 693, 744, 792
Tth111I GACNNNGTC 1 cut(s) 640
Van91I CCANNNNNTGG 1 cut(s) 236
VpaK11BI GGWCC 2 cut(s) 208, 239
XapI RAATTY 1 cut(s) 746
XbaI TCTAGA 1 cut(s) 370
XceI RCATGY 1 cut(s) 891
XcmI CCANNNNNNNNNTGG 1 cut(s) 178
XmiI GTMKAC 1 cut(s) 226
XspI CTAG 5 cut(s) 132, 321, 333, 371, 810
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.