gag-polypeptide of LTR copia-type
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 281 |
| AccB1I | GGYRCC | 2 cut(s) | 281, 622 |
| AciI | CCGC | 1 cut(s) | 532 |
| AcsI | RAATTY | 1 cut(s) | 782 |
| AcuI | CTGAAG | 3 cut(s) | 511, 828, 841 |
| AcyI | GRCGYC | 1 cut(s) | 68 |
| AfaI | GTAC | 2 cut(s) | 283, 1110 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 1009 |
| AgsI | TTSAA | 3 cut(s) | 62, 224, 961 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1058, 1090 |
| AluBI | AGCT | 4 cut(s) | 256, 335, 441, 505 |
| AluI | AGCT | 4 cut(s) | 256, 335, 441, 505 |
| Alw26I | GTCTC | 2 cut(s) | 295, 458 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 113, 245, 392 |
| Ama87I | CYCGRG | 2 cut(s) | 228, 359 |
| ApoI | RAATTY | 1 cut(s) | 782 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1070 |
| Asp718I | GGTACC | 1 cut(s) | 281 |
| AspA2I | CCTAGG | 1 cut(s) | 977 |
| AsuC2I | CCSGG | 1 cut(s) | 179 |
| AsuHPI | GGTGA | 2 cut(s) | 466, 533 |
| AvaI | CYCGRG | 2 cut(s) | 228, 359 |
| AvrII | CCTAGG | 1 cut(s) | 977 |
| BaeGI | GKGCMC | 2 cut(s) | 627, 643 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 273, 306 |
| BanI | GGYRCC | 2 cut(s) | 281, 622 |
| BbsI | GAAGAC | 1 cut(s) | 347 |
| BccI | CCATC | 1 cut(s) | 772 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 682, 716 |
| BciVI | GTATCC | 2 cut(s) | 500, 748 |
| BclI | TGATCA | 1 cut(s) | 1089 |
| BcnI | CCSGG | 1 cut(s) | 179 |
| BcoDI | GTCTC | 2 cut(s) | 295, 458 |
| BfaI | CTAG | 3 cut(s) | 402, 978, 1198 |
| BfmI | CTRYAG | 1 cut(s) | 1052 |
| BfuI | GTATCC | 2 cut(s) | 500, 748 |
| BlnI | CCTAGG | 1 cut(s) | 977 |
| Bme1390I | CCNGG | 1 cut(s) | 179 |
| BmeT110I | CYCGRG | 2 cut(s) | 228, 359 |
| BmiI | GGNNCC | 3 cut(s) | 283, 407, 624 |
| BmrFI | CCNGG | 1 cut(s) | 179 |
| BpiI | GAAGAC | 1 cut(s) | 347 |
| BpmI | CTGGAG | 1 cut(s) | 986 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1162 |
| BpuMI | CCSGG | 1 cut(s) | 179 |
| BsaAI | YACGTR | 1 cut(s) | 488 |
| BsaHI | GRCGYC | 1 cut(s) | 68 |
| BsaJI | CCNNGG | 2 cut(s) | 177, 977 |
| BsaWI | WCCGGW | 1 cut(s) | 574 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 1009 |
| Bse1I | ACTGG | 2 cut(s) | 876, 1003 |
| BseDI | CCNNGG | 2 cut(s) | 177, 977 |
| BseGI | GGATG | 1 cut(s) | 938 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 1009 |
| BseMII | CTCAG | 4 cut(s) | 327, 469, 648, 933 |
| BseNI | ACTGG | 2 cut(s) | 876, 1003 |
| BseSI | GKGCMC | 2 cut(s) | 627, 643 |
| BshNI | GGYRCC | 2 cut(s) | 281, 622 |
| BsiHKCI | CYCGRG | 2 cut(s) | 228, 359 |
| BsiSI | CCGG | 2 cut(s) | 179, 575 |
| BslFI | GGGAC | 1 cut(s) | 825 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 1009 |
| BsmAI | GTCTC | 2 cut(s) | 295, 458 |
| BsmFI | GGGAC | 1 cut(s) | 825 |
| BsoBI | CYCGRG | 2 cut(s) | 228, 359 |
| Bsp1286I | GDGCHC | 2 cut(s) | 627, 643 |
| Bsp143I | GATC | 2 cut(s) | 469, 1089 |
| BspACI | CCGC | 1 cut(s) | 532 |
| BspCNI | CTCAG | 4 cut(s) | 328, 468, 649, 932 |
| BspHI | TCATGA | 1 cut(s) | 723 |
| BspLI | GGNNCC | 3 cut(s) | 283, 407, 624 |
| BspMAI | CTGCAG | 1 cut(s) | 1056 |
| BspT107I | GGYRCC | 2 cut(s) | 281, 622 |
| BsrI | ACTGG | 2 cut(s) | 876, 1003 |
| BssECI | CCNNGG | 2 cut(s) | 177, 977 |
| BssMI | GATC | 2 cut(s) | 469, 1089 |
| BssNI | GRCGYC | 1 cut(s) | 68 |
| BssT1I | CCWWGG | 1 cut(s) | 977 |
| Bst4CI | ACNGT | 5 cut(s) | 145, 219, 394, 552, 735 |
| BstACI | GRCGYC | 1 cut(s) | 68 |
| BstBAI | YACGTR | 1 cut(s) | 488 |
| BstC8I | GCNNGC | 1 cut(s) | 914 |
| BstDEI | CTNAG | 7 cut(s) | 303, 336, 442, 455, 657, 919, 1162 |
| BstF5I | GGATG | 1 cut(s) | 938 |
| BstKTI | GATC | 2 cut(s) | 472, 1092 |
| BstMAI | GTCTC | 2 cut(s) | 295, 458 |
| BstMBI | GATC | 2 cut(s) | 469, 1089 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 387 |
| BstSCI | CCNGG | 1 cut(s) | 177 |
| BstSFI | CTRYAG | 1 cut(s) | 1052 |
| BstSLI | GKGCMC | 2 cut(s) | 627, 643 |
| BstSNI | TACGTA | 1 cut(s) | 488 |
| BstV2I | GAAGAC | 1 cut(s) | 347 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 883 |
| BsuI | GTATCC | 2 cut(s) | 500, 748 |
| BtsCI | GGATG | 1 cut(s) | 938 |
| BtsIMutI | CAGTG | 4 cut(s) | 390, 731, 753, 865 |
| Cac8I | GCNNGC | 1 cut(s) | 914 |
| CaiI | CAGNNNCTG | 3 cut(s) | 113, 245, 392 |
| CciI | TCATGA | 1 cut(s) | 723 |
| CseI | GACGC | 1 cut(s) | 76 |
| Csp6I | GTAC | 2 cut(s) | 282, 1109 |
| CviAII | CATG | 4 cut(s) | 287, 590, 694, 724 |
| CviJI | RGCY | 9 cut(s) | 256, 335, 406, 441, 505, 916, 929, 1014, 1161 |
| CviKI_1 | RGCY | 9 cut(s) | 256, 335, 406, 441, 505, 916, 929, 1014, 1161 |
| CviQI | GTAC | 2 cut(s) | 282, 1109 |
| DdeI | CTNAG | 7 cut(s) | 303, 336, 442, 455, 657, 919, 1162 |
| DpnI | GATC | 2 cut(s) | 471, 1091 |
| DpnII | GATC | 2 cut(s) | 469, 1089 |
| EciI | GGCGGA | 1 cut(s) | 547 |
| Eco105I | TACGTA | 1 cut(s) | 488 |
| Eco130I | CCWWGG | 1 cut(s) | 977 |
| Eco32I | GATATC | 1 cut(s) | 744 |
| Eco57I | CTGAAG | 3 cut(s) | 511, 828, 841 |
| Eco88I | CYCGRG | 2 cut(s) | 228, 359 |
| EcoRV | GATATC | 1 cut(s) | 744 |
| EcoT14I | CCWWGG | 1 cut(s) | 977 |
| ErhI | CCWWGG | 1 cut(s) | 977 |
| FaeI | CATG | 4 cut(s) | 290, 593, 697, 727 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 1058, 1090, 1145, 1177 |
| FaqI | GGGAC | 1 cut(s) | 825 |
| FatI | CATG | 4 cut(s) | 286, 589, 693, 723 |
| FbaI | TGATCA | 1 cut(s) | 1089 |
| FokI | GGATG | 1 cut(s) | 945 |
| FspBI | CTAG | 3 cut(s) | 402, 978, 1198 |
| GsuI | CTGGAG | 1 cut(s) | 986 |
| HapII | CCGG | 2 cut(s) | 179, 575 |
| HgaI | GACGC | 1 cut(s) | 76 |
| Hin1I | GRCGYC | 1 cut(s) | 68 |
| Hin1II | CATG | 4 cut(s) | 290, 593, 697, 727 |
| HindIII | AAGCTT | 2 cut(s) | 254, 439 |
| HinfI | GANTC | 8 cut(s) | 224, 242, 273, 426, 653, 699, 838, 969 |
| HpaII | CCGG | 2 cut(s) | 179, 575 |
| HphI | GGTGA | 2 cut(s) | 466, 533 |
| Hpy166II | GTNNAC | 2 cut(s) | 160, 679 |
| Hpy188I | TCNGA | 7 cut(s) | 261, 295, 458, 658, 922, 995, 1022 |
| Hpy188III | TCNNGA | 5 cut(s) | 228, 667, 724, 938, 1100 |
| Hpy8I | GTNNAC | 2 cut(s) | 160, 679 |
| Hpy99I | CGWCG | 1 cut(s) | 500 |
| HpyAV | CCTTC | 5 cut(s) | 356, 655, 717, 828, 865 |
| HpyCH4III | ACNGT | 5 cut(s) | 145, 219, 394, 552, 735 |
| HpyCH4IV | ACGT | 1 cut(s) | 487 |
| HpyCH4V | TGCA | 4 cut(s) | 31, 555, 1054, 1151 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 387 |
| HpyF3I | CTNAG | 7 cut(s) | 303, 336, 442, 455, 657, 919, 1162 |
| HpySE526I | ACGT | 1 cut(s) | 487 |
| Hsp92I | GRCGYC | 1 cut(s) | 68 |
| Hsp92II | CATG | 4 cut(s) | 290, 593, 697, 727 |
| KpnI | GGTACC | 1 cut(s) | 285 |
| Ksp22I | TGATCA | 1 cut(s) | 1089 |
| Kzo9I | GATC | 2 cut(s) | 469, 1089 |
| LmnI | GCTCC | 2 cut(s) | 411, 510 |
| MaeI | CTAG | 3 cut(s) | 402, 978, 1198 |
| MaeII | ACGT | 1 cut(s) | 487 |
| MaeIII | GTNAC | 3 cut(s) | 413, 521, 748 |
| MalI | GATC | 2 cut(s) | 471, 1091 |
| MboI | GATC | 2 cut(s) | 469, 1089 |
| MboII | GAAGA | 6 cut(s) | 352, 787, 821, 877, 973, 1040 |
| MhlI | GDGCHC | 2 cut(s) | 627, 643 |
| MluCI | AATT | 5 cut(s) | 32, 117, 782, 1041, 1115 |
| MlyI | GAGTC | 4 cut(s) | 236, 267, 647, 847 |
| MmeI | TCCRAC | 1 cut(s) | 782 |
| MnlI | CCTC | 6 cut(s) | 81, 616, 624, 928, 1003, 1172 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1070 |
| MseI | TTAA | 4 cut(s) | 252, 329, 437, 1016 |
| MslI | CAYNNNNRTG | 3 cut(s) | 692, 722, 763 |
| MspI | CCGG | 2 cut(s) | 179, 575 |
| MspR9I | CCNGG | 1 cut(s) | 179 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 387 |
| NciI | CCSGG | 1 cut(s) | 179 |
| NdeII | GATC | 2 cut(s) | 469, 1089 |
| NlaIII | CATG | 4 cut(s) | 290, 593, 697, 727 |
| NlaIV | GGNNCC | 3 cut(s) | 283, 407, 624 |
| NmuCI | GTSAC | 2 cut(s) | 521, 748 |
| PaeR7I | CTCGAG | 1 cut(s) | 359 |
| PagI | TCATGA | 1 cut(s) | 723 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 758 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1070 |
| PfeI | GAWTC | 4 cut(s) | 224, 426, 699, 969 |
| PleI | GAGTC | 4 cut(s) | 236, 267, 647, 846 |
| PpsI | GAGTC | 4 cut(s) | 236, 267, 647, 846 |
| Ppu21I | YACGTR | 1 cut(s) | 488 |
| PspN4I | GGNNCC | 3 cut(s) | 283, 407, 624 |
| PspXI | VCTCGAGB | 1 cut(s) | 359 |
| PstI | CTGCAG | 1 cut(s) | 1056 |
| PstNI | CAGNNNCTG | 3 cut(s) | 113, 245, 392 |
| RsaI | GTAC | 2 cut(s) | 283, 1110 |
| RsaNI | GTAC | 2 cut(s) | 282, 1109 |
| RseI | CAYNNNNRTG | 3 cut(s) | 692, 722, 763 |
| SaqAI | TTAA | 4 cut(s) | 252, 329, 437, 1016 |
| Sau3AI | GATC | 2 cut(s) | 469, 1089 |
| SchI | GAGTC | 4 cut(s) | 236, 267, 647, 847 |
| ScrFI | CCNGG | 1 cut(s) | 179 |
| SduI | GDGCHC | 2 cut(s) | 627, 643 |
| SfcI | CTRYAG | 1 cut(s) | 1052 |
| Sfr274I | CTCGAG | 1 cut(s) | 359 |
| SlaI | CTCGAG | 1 cut(s) | 359 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 692, 722, 763 |
| SmlI | CTYRAG | 1 cut(s) | 359 |
| SmoI | CTYRAG | 1 cut(s) | 359 |
| SnaBI | TACGTA | 1 cut(s) | 488 |
| Sse9I | AATT | 5 cut(s) | 32, 117, 782, 1041, 1115 |
| SsiI | CCGC | 1 cut(s) | 532 |
| SspI | AATATT | 1 cut(s) | 571 |
| SspMI | CTAG | 3 cut(s) | 402, 978, 1198 |
| StyD4I | CCNGG | 1 cut(s) | 177 |
| StyI | CCWWGG | 1 cut(s) | 977 |
| TaaI | ACNGT | 5 cut(s) | 145, 219, 394, 552, 735 |
| TaiI | ACGT | 1 cut(s) | 490 |
| TaqI | TCGA | 5 cut(s) | 95, 360, 565, 702, 761 |
| TasI | AATT | 5 cut(s) | 32, 117, 782, 1041, 1115 |
| TfiI | GAWTC | 4 cut(s) | 224, 426, 699, 969 |
| Tru1I | TTAA | 4 cut(s) | 252, 329, 437, 1016 |
| Tru9I | TTAA | 4 cut(s) | 252, 329, 437, 1016 |
| TscAI | CASTG | 4 cut(s) | 397, 738, 753, 865 |
| TseFI | GTSAC | 2 cut(s) | 521, 748 |
| Tsp45I | GTSAC | 2 cut(s) | 521, 748 |
| TspDTI | ATGAA | 7 cut(s) | 81, 138, 138, 699, 712, 740, 1188 |
| TspGWI | ACGGA | 3 cut(s) | 285, 497, 767 |
| TspRI | CASTG | 4 cut(s) | 397, 738, 753, 865 |
| XapI | RAATTY | 1 cut(s) | 782 |
| XhoI | CTCGAG | 1 cut(s) | 359 |
| XmaJI | CCTAGG | 1 cut(s) | 977 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1070 |
| XspI | CTAG | 3 cut(s) | 402, 978, 1198 |