Rmu_sc0002952.1_g000016
NAC Family

Chromatin structure-remodeling complex protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002952.1
OG0001340
Physical Location & Seq
Reverse (-)
48594 .. 49916
1323 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002952.1_g000016.1.cds

Sequence Viewer

Length: 1323 bp
atgaaaactataatcagggctaagcataacccggtttcaacacaagaattaaggtctcttttgctcattgctgaagctgaacttgaagaggctaagaagtctatatctttgccttctaagactgaatttgtggcacaagatgatagttgcagaagaaatggtggtatgcatcaacaatatgatattcatatgcctcaaatgcaagccaatagttacatgttgcagcaagcaactccctctacattcactcctagtcttgcaacctatggtggaatatcacaagtgcacaatgcttcttttcctcaaaattcaagcttcttgcagcagtctagtttttcacaactttctacaccatacagtagtagcacacaacaaaatgtttatggttgtttctctcagcctactggtttcattacacaaagtgaaggagtccaaaagtctaatggtaatggaattcgcaatggagcacaaagctataatggtccacaacagctacagggaaactctcaaagtttgaaaaatggcttctcacaacgaaatgcttctactggttgtttctctcagcctactggtttcattgcacaaagtgaaggagtgcaaaagtctaatggtaatggaattcgcaatggagcacaaagctataatggtccacaacagctacagggcaactctcaaagtttgaaaaatggcttctcacaacgaaatgcttctacaccaggagagacttcggtaggaacagattttgagaaaatgactaaatttggtgctctagtagacattggtcggaatgtaaatgagaaaaaatctgaaacattggttggaatggattctaagcttcaattacaaattgatcaggcaatgatagacttggataaggcaaaaaaggaggatgaacttggagtaaatgtcatattggctgctaagataggaaatgaaggtacaatggaacaacctgaagaacttgaagtttcctctattcttaacactacaaatggtcttgctactataggtagtgtgattaactcgaggaagggaaagatgagcaaaggtgatggtgacaatgctaattttcatattgtttctagtagtagtgatcaaatgaagcagtctacttcactctcagctggaagcatgagaccaatggttagagtcaagcaagaagggcaacatttaatagaaagccaactggatttgaccaacagtagtaacagtttggtgtctcaagcaatggagctcaagaaagtcaaaactatgatgaattgtaggagagcttgtcaaccaatggagttatggccatcacttcctcttcttcctcctggttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000166 GO:0000228 GO:0000785 GO:0000790 GO:0000988 GO:0000990 GO:0000991 GO:0002831 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005829 GO:0006139 GO:0006325 GO:0006338 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0006950 GO:0006996 GO:0007275 GO:0008026 GO:0008094 GO:0008144 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009611 GO:0009653 GO:0009791 GO:0009889 GO:0009908 GO:0009966 GO:0009987 GO:0010104 GO:0010199 GO:0010467 GO:0010468 GO:0010556 GO:0010646 GO:0010959 GO:0016043 GO:0016070 GO:0016462 GO:0016514 GO:0016586 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017076 GO:0017111 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022414 GO:0023051 GO:0030554 GO:0031323 GO:0031326 GO:0031347 GO:0031974 GO:0031981 GO:0032101 GO:0032392 GO:0032501 GO:0032502 GO:0032508 GO:0032553 GO:0032555 GO:0032559 GO:0032774 GO:0032879 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0034756 GO:0035639 GO:0036094 GO:0040029 GO:0042623 GO:0043044 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043269 GO:0043900 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0048367 GO:0048583 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0048859 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051171 GO:0051252 GO:0051276 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0070035 GO:0070297 GO:0070603 GO:0071103 GO:0071704 GO:0071840 GO:0080090 GO:0080134 GO:0090304 GO:0090567 GO:0090691 GO:0097159 GO:0097367 GO:0097659 GO:0140097 GO:0140110 GO:1900150 GO:1900390 GO:1900393 GO:1900400 GO:1901265 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902494 GO:1902531 GO:1903506 GO:1904949 GO:2000022 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04714 ko05225 map04714 map05225
Pfam Domains
Protein Families
Helicase_C SNF2_N SnAC

Protein Analysis

440

Amino Acids

47.66

Weight (kDa)

8.46

Isoelectric Point (pI)

55.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 774, 1109
AcoI YGGCCR 1 cut(s) 1292
AcsI RAATTY 5 cut(s) 125, 307, 453, 618, 758
AcuI CTGAAG 2 cut(s) 93, 975
AdeI CACNNNGTG 2 cut(s) 422, 587
AfaI GTAC 1 cut(s) 940
AflIII ACRYGT 1 cut(s) 216
AgsI TTSAA 7 cut(s) 39, 86, 312, 517, 682, 839, 965
AjnI CCWGG 2 cut(s) 715, 1315
AjuI GAANNNNNNNTTGG 2 cut(s) 801, 833
Alw21I GWGCWC 5 cut(s) 288, 469, 634, 769, 1236
Alw26I GTCTC 4 cut(s) 60, 716, 1129, 1224
Alw44I GTGCAC 1 cut(s) 284
Ama87I CYCGRG 1 cut(s) 1024
AoxI GGCC 1 cut(s) 1292
ApaLI GTGCAC 1 cut(s) 284
ApeKI GCWGC 3 cut(s) 223, 322, 917
ApoI RAATTY 5 cut(s) 125, 307, 453, 618, 758
Asp700I GAANNNNTTC 3 cut(s) 541, 706, 826
AspS9I GGNCC 2 cut(s) 482, 647
AsuC2I CCSGG 1 cut(s) 32
AsuHPI GGTGA 2 cut(s) 1061, 1067
AvaI CYCGRG 1 cut(s) 1024
AvaII GGWCC 2 cut(s) 482, 647
BaeGI GKGCMC 1 cut(s) 288
BalI TGGCCA 1 cut(s) 1294
BanII GRGCYC 1 cut(s) 1236
Bbv12I GWGCWC 5 cut(s) 288, 469, 634, 769, 1236
BbvI GCAGC 3 cut(s) 235, 334, 904
BccI CCATC 2 cut(s) 1046, 1303
BciT130I CCWGG 2 cut(s) 717, 1317
BclI TGATCA 2 cut(s) 850, 1093
BcnI CCSGG 1 cut(s) 32
BcoDI GTCTC 4 cut(s) 60, 716, 1129, 1224
BfaI CTAG 4 cut(s) 252, 330, 770, 1083
BfmI CTRYAG 3 cut(s) 494, 659, 1005
BisI GCNGC 3 cut(s) 224, 323, 918
BlpI GCTNAGC 1 cut(s) 21
BlsI GCNGC 3 cut(s) 225, 324, 919
Bme1390I CCNGG 3 cut(s) 32, 717, 1317
Bme18I GGWCC 2 cut(s) 482, 647
BmeT110I CYCGRG 1 cut(s) 1024
BmgT120I GGNCC 2 cut(s) 482, 647
BmrFI CCNGG 3 cut(s) 32, 717, 1317
BmsI GCATC 1 cut(s) 178
BoxI GACNNNNGTC 1 cut(s) 780
Bpu1102I GCTNAGC 1 cut(s) 21
BpuEI CTTGAG 2 cut(s) 1206, 1220
BpuMI CCSGG 1 cut(s) 32
BsaI GGTCTC 2 cut(s) 60, 1129
BsaXI ACNNNNNCTCC 6 cut(s) 232, 262, 891, 921, 1258, 1288
Bse1I ACTGG 4 cut(s) 409, 553, 574, 1191
Bse3DI GCAATG 6 cut(s) 66, 466, 576, 631, 864, 1233
BseBI CCWGG 2 cut(s) 717, 1317
BseGI GGATG 1 cut(s) 895
BseMI GCAATG 6 cut(s) 66, 466, 576, 631, 864, 1233
BseMII CTCAG 3 cut(s) 410, 575, 1134
BseNI ACTGG 4 cut(s) 409, 553, 574, 1191
BseSI GKGCMC 1 cut(s) 288
BseXI GCAGC 3 cut(s) 235, 334, 904
BshFI GGCC 1 cut(s) 1294
BsiHKAI GWGCWC 5 cut(s) 288, 469, 634, 769, 1236
BsiHKCI CYCGRG 1 cut(s) 1024
BsiSI CCGG 1 cut(s) 32
BsmAI GTCTC 4 cut(s) 60, 716, 1129, 1224
BsnI GGCC 1 cut(s) 1294
Bso31I GGTCTC 2 cut(s) 60, 1129
BsoBI CYCGRG 1 cut(s) 1024
Bsp1286I GDGCHC 5 cut(s) 288, 469, 634, 769, 1236
Bsp143I GATC 2 cut(s) 850, 1093
Bsp1720I GCTNAGC 1 cut(s) 21
BspANI GGCC 1 cut(s) 1294
BspCNI CTCAG 3 cut(s) 409, 574, 1133
BspTNI GGTCTC 2 cut(s) 60, 1129
BsrDI GCAATG 6 cut(s) 66, 466, 576, 631, 864, 1233
BsrI ACTGG 4 cut(s) 409, 553, 574, 1191
BssMI GATC 2 cut(s) 850, 1093
Bst2UI CCWGG 2 cut(s) 717, 1317
Bst4CI ACNGT 3 cut(s) 359, 1202, 1211
Bst6I CTCTTC 2 cut(s) 81, 1311
BstC8I GCNNGC 2 cut(s) 204, 228
BstDEI CTNAG 8 cut(s) 21, 93, 117, 396, 561, 831, 921, 1120
BstF5I GGATG 1 cut(s) 895
BstKTI GATC 2 cut(s) 853, 1096
BstMAI GTCTC 4 cut(s) 60, 716, 1129, 1224
BstMBI GATC 2 cut(s) 850, 1093
BstMWI GCNNNNNNNGC 2 cut(s) 199, 1162
BstNI CCWGG 2 cut(s) 717, 1317
BstNSI RCATGY 1 cut(s) 220
BstPAI GACNNNNGTC 1 cut(s) 780
BstSCI CCNGG 3 cut(s) 30, 715, 1315
BstSFI CTRYAG 3 cut(s) 494, 659, 1005
BstSLI GKGCMC 1 cut(s) 288
BstV1I GCAGC 3 cut(s) 235, 334, 904
BsuRI GGCC 1 cut(s) 1294
BtsCI GGATG 1 cut(s) 895
Cac8I GCNNGC 2 cut(s) 204, 228
Cfr13I GGNCC 2 cut(s) 482, 647
Csp6I GTAC 1 cut(s) 939
CviAII CATG 2 cut(s) 217, 1132
CviQI GTAC 1 cut(s) 939
DdeI CTNAG 8 cut(s) 21, 93, 117, 396, 561, 831, 921, 1120
DpnI GATC 2 cut(s) 852, 1095
DpnII GATC 2 cut(s) 850, 1093
DraIII CACNNNGTG 2 cut(s) 422, 587
EaeI YGGCCR 1 cut(s) 1292
Eam1104I CTCTTC 2 cut(s) 81, 1311
EarI CTCTTC 2 cut(s) 81, 1311
Ecl136II GAGCTC 1 cut(s) 1234
Eco24I GRGCYC 1 cut(s) 1236
Eco31I GGTCTC 2 cut(s) 60, 1129
Eco47I GGWCC 2 cut(s) 482, 647
Eco53kI GAGCTC 1 cut(s) 1234
Eco57I CTGAAG 2 cut(s) 93, 975
Eco88I CYCGRG 1 cut(s) 1024
EcoICRI GAGCTC 1 cut(s) 1234
EcoRI GAATTC 2 cut(s) 453, 618
EcoRII CCWGG 2 cut(s) 715, 1315
EcoT22I ATGCAT 1 cut(s) 171
EcoT38I GRGCYC 1 cut(s) 1236
FaeI CATG 2 cut(s) 220, 1135
FalI AAGNNNNNCTT 2 cut(s) 66, 98
FatI CATG 2 cut(s) 216, 1131
FauNDI CATATG 1 cut(s) 189
FbaI TGATCA 2 cut(s) 850, 1093
FblI GTMKAC 2 cut(s) 774, 1109
Fnu4HI GCNGC 3 cut(s) 224, 323, 918
FokI GGATG 1 cut(s) 902
FriOI GRGCYC 1 cut(s) 1236
Fsp4HI GCNGC 3 cut(s) 224, 323, 918
FspBI CTAG 4 cut(s) 252, 330, 770, 1083
GluI GCNGC 3 cut(s) 224, 323, 918
HaeIII GGCC 1 cut(s) 1294
HapII CCGG 1 cut(s) 32
Hin1II CATG 2 cut(s) 220, 1135
HincII GTYRAC 1 cut(s) 1277
HindII GTYRAC 1 cut(s) 1277
HindIII AAGCTT 2 cut(s) 313, 833
HinfI GANTC 3 cut(s) 429, 827, 1149
HpaII CCGG 1 cut(s) 32
HphI GGTGA 2 cut(s) 1061, 1067
Hpy166II GTNNAC 6 cut(s) 286, 485, 650, 775, 1110, 1277
Hpy188I TCNGA 2 cut(s) 786, 808
Hpy188III TCNNGA 1 cut(s) 1237
Hpy8I GTNNAC 6 cut(s) 286, 485, 650, 775, 1110, 1277
HpyAV CCTTC 6 cut(s) 123, 419, 584, 929, 1024, 1154
HpyCH4III ACNGT 3 cut(s) 359, 1202, 1211
HpyCH4V TGCA 9 cut(s) 150, 169, 202, 223, 260, 286, 322, 581, 598
HpyF10VI GCNNNNNNNGC 2 cut(s) 199, 1162
HpyF3I CTNAG 8 cut(s) 21, 93, 117, 396, 561, 831, 921, 1120
Hsp92II CATG 2 cut(s) 220, 1135
Ksp22I TGATCA 2 cut(s) 850, 1093
Kzo9I GATC 2 cut(s) 850, 1093
LmnI GCTCC 3 cut(s) 464, 629, 1231
Lsp1109I GCAGC 3 cut(s) 235, 334, 904
LweI GCATC 1 cut(s) 178
MaeI CTAG 4 cut(s) 252, 330, 770, 1083
MaeIII GTNAC 3 cut(s) 212, 1055, 1205
MalI GATC 2 cut(s) 852, 1095
MboI GATC 2 cut(s) 850, 1093
MboII GAAGA 5 cut(s) 98, 165, 968, 1298, 1301
MhlI GDGCHC 5 cut(s) 288, 469, 634, 769, 1236
MlsI TGGCCA 1 cut(s) 1294
MluNI TGGCCA 1 cut(s) 1294
MlyI GAGTC 2 cut(s) 438, 1158
MmeI TCCRAC 2 cut(s) 764, 799
MnlI CCTC 9 cut(s) 82, 204, 247, 312, 880, 982, 1020, 1314, 1323
Mox20I TGGCCA 1 cut(s) 1294
Mph1103I ATGCAT 1 cut(s) 171
MroXI GAANNNNTTC 3 cut(s) 541, 706, 826
MscI TGGCCA 1 cut(s) 1294
MseI TTAA 5 cut(s) 50, 981, 1020, 1172, 1321
Msp20I TGGCCA 1 cut(s) 1294
MspA1I CMGCKG 1 cut(s) 1124
MspI CCGG 1 cut(s) 32
MspR9I CCNGG 3 cut(s) 32, 717, 1317
MvaI CCWGG 2 cut(s) 717, 1317
MwoI GCNNNNNNNGC 2 cut(s) 199, 1162
NciI CCSGG 1 cut(s) 32
NdeI CATATG 1 cut(s) 189
NdeII GATC 2 cut(s) 850, 1093
NlaIII CATG 2 cut(s) 220, 1135
NmuCI GTSAC 1 cut(s) 1055
NsiI ATGCAT 1 cut(s) 171
NspI RCATGY 1 cut(s) 220
PaeR7I CTCGAG 1 cut(s) 1024
PciI ACATGT 1 cut(s) 216
PdmI GAANNNNTTC 3 cut(s) 541, 706, 826
PfeI GAWTC 1 cut(s) 827
PkrI GCNGC 3 cut(s) 225, 324, 919
PleI GAGTC 2 cut(s) 437, 1157
PpsI GAGTC 2 cut(s) 437, 1157
PscI ACATGT 1 cut(s) 216
PshAI GACNNNNGTC 1 cut(s) 780
Psp124BI GAGCTC 1 cut(s) 1236
Psp6I CCWGG 2 cut(s) 715, 1315
PspGI CCWGG 2 cut(s) 715, 1315
PspPI GGNCC 2 cut(s) 482, 647
PspXI VCTCGAGB 1 cut(s) 1024
PvuII CAGCTG 1 cut(s) 1124
RsaI GTAC 1 cut(s) 940
RsaNI GTAC 1 cut(s) 939
SacI GAGCTC 1 cut(s) 1236
SaqAI TTAA 5 cut(s) 50, 981, 1020, 1172, 1321
SatI GCNGC 3 cut(s) 224, 323, 918
Sau3AI GATC 2 cut(s) 850, 1093
Sau96I GGNCC 2 cut(s) 482, 647
SchI GAGTC 2 cut(s) 438, 1158
ScrFI CCNGG 3 cut(s) 32, 717, 1317
SduI GDGCHC 5 cut(s) 288, 469, 634, 769, 1236
SfaNI GCATC 1 cut(s) 178
SfcI CTRYAG 3 cut(s) 494, 659, 1005
Sfr274I CTCGAG 1 cut(s) 1024
SinI GGWCC 2 cut(s) 482, 647
SlaI CTCGAG 1 cut(s) 1024
SmlI CTYRAG 3 cut(s) 1024, 1221, 1235
SmoI CTYRAG 3 cut(s) 1024, 1221, 1235
SspMI CTAG 4 cut(s) 252, 330, 770, 1083
SstI GAGCTC 1 cut(s) 1236
StyD4I CCNGG 3 cut(s) 30, 715, 1315
TaaI ACNGT 3 cut(s) 359, 1202, 1211
TaqI TCGA 1 cut(s) 1025
TfiI GAWTC 1 cut(s) 827
Tru1I TTAA 5 cut(s) 50, 981, 1020, 1172, 1321
Tru9I TTAA 5 cut(s) 50, 981, 1020, 1172, 1321
TseFI GTSAC 1 cut(s) 1055
TseI GCWGC 3 cut(s) 223, 322, 917
Tsp45I GTSAC 1 cut(s) 1055
TspDTI ATGAA 9 cut(s) 17, 176, 400, 565, 906, 948, 1061, 1115, 1271
VneI GTGCAC 1 cut(s) 284
VpaK11BI GGWCC 2 cut(s) 482, 647
XapI RAATTY 5 cut(s) 125, 307, 453, 618, 758
XceI RCATGY 1 cut(s) 220
XcmI CCANNNNNNNNNTGG 2 cut(s) 440, 1287
XhoI CTCGAG 1 cut(s) 1024
XmiI GTMKAC 2 cut(s) 774, 1109
XmnI GAANNNNTTC 3 cut(s) 541, 706, 826
XspI CTAG 4 cut(s) 252, 330, 770, 1083
Zsp2I ATGCAT 1 cut(s) 171
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.