Rmu_sc0002952.1_g000017

gag-polypeptide of LTR copia-type

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002952.1
OG0001340
Physical Location & Seq
Reverse (-)
50015 .. 50443
429 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002952.1_g000017.1.cds

Sequence Viewer

Length: 429 bp
atgttaaaaggttgtggcctaatgaaatatatagatggttcattcccttgtcctgcacaatacatgatcacagaagaaaaagaaggcacatctgaaacaacagcagagtacagtaattggaagcaaagcgattatgctattatggctcttcttgctgctactctatctagtgatgtcctctcttttgttgttggaagtaacagttctagggaactttggtgtttgctcaaagagagatatgcttctacttcatggtttaacaaggagcaattaaagaccaacttctacaaacttcaaaaaggttcagattcgattgacaagtacttggatcgggtgaagatagcttgtgatcagttggctaatgttgggatttatatgacagatgaagacataattgtctctgttcttctaagtacttggatcgggtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2 gag_pre-integrs

Protein Analysis

142

Amino Acids

16.02

Weight (kDa)

4.83

Isoelectric Point (pI)

41.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 395
AclWI GGATC 2 cut(s) 336, 428
AfaI GTAC 3 cut(s) 110, 323, 415
AgsI TTSAA 1 cut(s) 296
AluBI AGCT 1 cut(s) 344
AluI AGCT 1 cut(s) 344
Alw26I GTCTC 1 cut(s) 403
AlwI GGATC 2 cut(s) 336, 428
AoxI GGCC 1 cut(s) 16
ApeKI GCWGC 1 cut(s) 155
AsuHPI GGTGA 1 cut(s) 346
BbsI GAAGAC 1 cut(s) 393
BbvI GCAGC 1 cut(s) 142
BccI CCATC 1 cut(s) 29
BclI TGATCA 2 cut(s) 66, 349
BcoDI GTCTC 1 cut(s) 403
BfaI CTAG 2 cut(s) 168, 207
BisI GCNGC 1 cut(s) 156
BlsI GCNGC 1 cut(s) 157
BmcAI AGTACT 2 cut(s) 323, 415
BpiI GAAGAC 1 cut(s) 393
BseXI GCAGC 1 cut(s) 142
BsgI GTGCAG 1 cut(s) 39
BshFI GGCC 1 cut(s) 18
BsmAI GTCTC 1 cut(s) 403
BsnI GGCC 1 cut(s) 18
Bsp143I GATC 4 cut(s) 66, 328, 349, 420
BspANI GGCC 1 cut(s) 18
BspPI GGATC 2 cut(s) 336, 428
BspQI GCTCTTC 1 cut(s) 153
BssMI GATC 4 cut(s) 66, 328, 349, 420
Bst4CI ACNGT 2 cut(s) 113, 203
Bst6I CTCTTC 1 cut(s) 153
BstDEI CTNAG 1 cut(s) 410
BstKTI GATC 4 cut(s) 69, 331, 352, 423
BstMAI GTCTC 1 cut(s) 403
BstMBI GATC 4 cut(s) 66, 328, 349, 420
BstMWI GCNNNNNNNGC 2 cut(s) 143, 152
BstV1I GCAGC 1 cut(s) 142
BstV2I GAAGAC 1 cut(s) 393
BsuRI GGCC 1 cut(s) 18
Csp6I GTAC 3 cut(s) 109, 322, 414
CviAII CATG 2 cut(s) 64, 252
CviJI RGCY 4 cut(s) 18, 146, 344, 359
CviKI_1 RGCY 4 cut(s) 18, 146, 344, 359
CviQI GTAC 3 cut(s) 109, 322, 414
DdeI CTNAG 1 cut(s) 410
DpnI GATC 4 cut(s) 68, 330, 351, 422
DpnII GATC 4 cut(s) 66, 328, 349, 420
DrdI GACNNNNNNGTC 1 cut(s) 395
DseDI GACNNNNNNGTC 1 cut(s) 395
Eam1104I CTCTTC 1 cut(s) 153
EarI CTCTTC 1 cut(s) 153
FaeI CATG 2 cut(s) 67, 255
FalI AAGNNNNNCTT 2 cut(s) 266, 298
FatI CATG 2 cut(s) 63, 251
FbaI TGATCA 2 cut(s) 66, 349
Fnu4HI GCNGC 1 cut(s) 156
Fsp4HI GCNGC 1 cut(s) 156
FspBI CTAG 2 cut(s) 168, 207
GluI GCNGC 1 cut(s) 156
HaeIII GGCC 1 cut(s) 18
Hin1II CATG 2 cut(s) 67, 255
HinfI GANTC 1 cut(s) 308
HphI GGTGA 1 cut(s) 346
Hpy188I TCNGA 2 cut(s) 94, 307
HpyAV CCTTC 1 cut(s) 77
HpyCH4III ACNGT 2 cut(s) 113, 203
HpyCH4V TGCA 1 cut(s) 56
HpyF10VI GCNNNNNNNGC 2 cut(s) 143, 152
HpyF3I CTNAG 1 cut(s) 410
Hsp92II CATG 2 cut(s) 67, 255
Ksp22I TGATCA 2 cut(s) 66, 349
Kzo9I GATC 4 cut(s) 66, 328, 349, 420
LguI GCTCTTC 1 cut(s) 153
LmnI GCTCC 1 cut(s) 265
LpnPI CCDG 1 cut(s) 66
Lsp1109I GCAGC 1 cut(s) 142
MaeI CTAG 2 cut(s) 168, 207
MaeIII GTNAC 1 cut(s) 197
MalI GATC 4 cut(s) 68, 330, 351, 422
MboI GATC 4 cut(s) 66, 328, 349, 420
MboII GAAGA 5 cut(s) 86, 140, 349, 398, 398
MluCI AATT 3 cut(s) 115, 269, 393
MmeI TCCRAC 1 cut(s) 172
MnlI CCTC 1 cut(s) 188
MseI TTAA 3 cut(s) 5, 258, 272
MwoI GCNNNNNNNGC 2 cut(s) 143, 152
NdeII GATC 4 cut(s) 66, 328, 349, 420
NlaIII CATG 2 cut(s) 67, 255
PciSI GCTCTTC 1 cut(s) 153
PfeI GAWTC 1 cut(s) 308
PkrI GCNGC 1 cut(s) 157
RsaI GTAC 3 cut(s) 110, 323, 415
RsaNI GTAC 3 cut(s) 109, 322, 414
SapI GCTCTTC 1 cut(s) 153
SaqAI TTAA 3 cut(s) 5, 258, 272
SatI GCNGC 1 cut(s) 156
Sau3AI GATC 4 cut(s) 66, 328, 349, 420
ScaI AGTACT 2 cut(s) 323, 415
SetI ASST 3 cut(s) 13, 304, 346
Sse9I AATT 3 cut(s) 115, 269, 393
SspMI CTAG 2 cut(s) 168, 207
TaaI ACNGT 2 cut(s) 113, 203
TaqI TCGA 1 cut(s) 311
TasI AATT 3 cut(s) 115, 269, 393
TatI WGTACW 3 cut(s) 108, 321, 413
TfiI GAWTC 1 cut(s) 308
Tru1I TTAA 3 cut(s) 5, 258, 272
Tru9I TTAA 3 cut(s) 5, 258, 272
TseI GCWGC 1 cut(s) 155
TspDTI ATGAA 4 cut(s) 30, 38, 240, 399
XspI CTAG 2 cut(s) 168, 207
ZrmI AGTACT 2 cut(s) 323, 415
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.