Rmu_sc0006422.1_g000014

No description available

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006422.1
Physical Location & Seq
Reverse (-)
53913 .. 54425
513 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006422.1_g000014.1.cds

Sequence Viewer

Length: 513 bp
atgcaagagttaagatctcttttgctcattgctcaagctgaacttgaagaggttgacaagtctatttccttaccttccaatactgaaatcgtagcacaaggtgataatgtcagagggtctactcctgcaccaactcatgttatagatgccaaatatgacgttactgctttgatgcctccaagtagtgatgcccattctattgaatatactgcacaatctatgcctaattcaaggtacatgaatgctccttatgtcactgcatttgttcctacaatgacttctacatatgctacaaatactattgtacaaaataagaactccataatgcaacctttgccaacccatgatcccatattcaatcaatggtatgttcaaccacaagaaaattctgattatggttacaatactggtgaaagtcaatacaatgaagcattcaattctggtgttactgagcgaaatgaaggtctcatgcaacaaaatggttgcttacatcaaagtgaaggtctctcatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

170

Amino Acids

18.82

Weight (kDa)

4.45

Isoelectric Point (pI)

49.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 119
AclWI GGATC 1 cut(s) 341
AcsI RAATTY 1 cut(s) 385
AdeI CACNNNGTG 1 cut(s) 101
AfaI GTAC 2 cut(s) 236, 306
AgsI TTSAA 6 cut(s) 47, 203, 231, 358, 374, 436
AluBI AGCT 1 cut(s) 38
AluI AGCT 1 cut(s) 38
Alw26I GTCTC 2 cut(s) 470, 509
AlwI GGATC 1 cut(s) 341
ApoI RAATTY 1 cut(s) 385
ArsI GACNNNNNNTTYG 3 cut(s) 448, 480, 487
AsuHPI GGTGA 2 cut(s) 113, 422
BcoDI GTCTC 2 cut(s) 470, 509
BglII AGATCT 1 cut(s) 14
BmsI GCATC 3 cut(s) 136, 162, 178
BpuEI CTTGAG 1 cut(s) 18
BsaI GGTCTC 2 cut(s) 470, 509
Bse1I ACTGG 1 cut(s) 412
Bse3DI GCAATG 1 cut(s) 27
BseMI GCAATG 1 cut(s) 27
BseMII CTCAG 1 cut(s) 441
BseNI ACTGG 1 cut(s) 412
BsgI GTGCAG 2 cut(s) 111, 195
BsmAI GTCTC 2 cut(s) 470, 509
BsmI GAATGC 2 cut(s) 247, 431
Bso31I GGTCTC 2 cut(s) 470, 509
Bsp1407I TGTACA 1 cut(s) 304
Bsp143I GATC 2 cut(s) 14, 346
BspCNI CTCAG 1 cut(s) 442
BspPI GGATC 1 cut(s) 341
BspTNI GGTCTC 2 cut(s) 470, 509
BsrDI GCAATG 1 cut(s) 27
BsrGI TGTACA 1 cut(s) 304
BsrI ACTGG 1 cut(s) 412
BssMI GATC 2 cut(s) 14, 346
Bst6I CTCTTC 1 cut(s) 42
BstAPI GCANNNNNTGC 1 cut(s) 334
BstAUI TGTACA 1 cut(s) 304
BstDEI CTNAG 1 cut(s) 450
BstKTI GATC 2 cut(s) 17, 349
BstMAI GTCTC 2 cut(s) 470, 509
BstMBI GATC 2 cut(s) 14, 346
BstMWI GCNNNNNNNGC 1 cut(s) 334
BstX2I RGATCY 1 cut(s) 14
BstYI RGATCY 1 cut(s) 14
BtsI GCAGTG 1 cut(s) 255
BtsIMutI CAGTG 1 cut(s) 255
Csp6I GTAC 2 cut(s) 235, 305
CviAII CATG 4 cut(s) 137, 238, 344, 469
CviJI RGCY 1 cut(s) 38
CviKI_1 RGCY 1 cut(s) 38
CviQI GTAC 2 cut(s) 235, 305
DdeI CTNAG 1 cut(s) 450
DpnI GATC 2 cut(s) 16, 348
DpnII GATC 2 cut(s) 14, 346
DraIII CACNNNGTG 1 cut(s) 101
Eam1104I CTCTTC 1 cut(s) 42
EarI CTCTTC 1 cut(s) 42
Eco31I GGTCTC 2 cut(s) 470, 509
FaeI CATG 4 cut(s) 140, 241, 347, 472
FalI AAGNNNNNCTT 2 cut(s) 27, 59
FatI CATG 4 cut(s) 136, 237, 343, 468
FauNDI CATATG 1 cut(s) 286
FblI GTMKAC 1 cut(s) 119
Hin1II CATG 4 cut(s) 140, 241, 347, 472
HincII GTYRAC 1 cut(s) 55
HindII GTYRAC 1 cut(s) 55
HphI GGTGA 2 cut(s) 113, 422
Hpy166II GTNNAC 2 cut(s) 55, 120
Hpy188I TCNGA 2 cut(s) 113, 391
Hpy8I GTNNAC 2 cut(s) 55, 120
HpyAV CCTTC 3 cut(s) 84, 455, 494
HpyCH4IV ACGT 1 cut(s) 159
HpyCH4V TGCA 6 cut(s) 4, 128, 212, 260, 328, 472
HpyF10VI GCNNNNNNNGC 1 cut(s) 334
HpyF3I CTNAG 1 cut(s) 450
HpySE526I ACGT 1 cut(s) 159
Hsp92II CATG 4 cut(s) 140, 241, 347, 472
Kzo9I GATC 2 cut(s) 14, 346
LmnI GCTCC 1 cut(s) 250
LpnPI CCDG 3 cut(s) 138, 393, 426
LweI GCATC 3 cut(s) 136, 162, 178
MaeII ACGT 1 cut(s) 159
MaeIII GTNAC 4 cut(s) 160, 253, 398, 445
MalI GATC 2 cut(s) 16, 348
MboI GATC 2 cut(s) 14, 346
MboII GAAGA 1 cut(s) 59
MflI RGATCY 1 cut(s) 14
MluCI AATT 3 cut(s) 226, 385, 436
MnlI CCTC 3 cut(s) 43, 107, 186
MseI TTAA 1 cut(s) 11
MslI CAYNNNNRTG 1 cut(s) 495
Mva1269I GAATGC 2 cut(s) 247, 431
MwoI GCNNNNNNNGC 1 cut(s) 334
NdeI CATATG 1 cut(s) 286
NdeII GATC 2 cut(s) 14, 346
NlaIII CATG 4 cut(s) 140, 241, 347, 472
NmuCI GTSAC 1 cut(s) 253
PctI GAATGC 2 cut(s) 247, 431
PsuI RGATCY 1 cut(s) 14
RsaI GTAC 2 cut(s) 236, 306
RsaNI GTAC 2 cut(s) 235, 305
RseI CAYNNNNRTG 1 cut(s) 495
SaqAI TTAA 1 cut(s) 11
Sau3AI GATC 2 cut(s) 14, 346
SetI ASST 9 cut(s) 40, 54, 76, 103, 162, 236, 334, 466, 505
SfaNI GCATC 3 cut(s) 136, 162, 178
SmiMI CAYNNNNRTG 1 cut(s) 495
SmlI CTYRAG 1 cut(s) 33
SmoI CTYRAG 1 cut(s) 33
Sse9I AATT 3 cut(s) 226, 385, 436
TaiI ACGT 1 cut(s) 162
TasI AATT 3 cut(s) 226, 385, 436
TatI WGTACW 1 cut(s) 304
Tru1I TTAA 1 cut(s) 11
Tru9I TTAA 1 cut(s) 11
TscAI CASTG 1 cut(s) 262
TseFI GTSAC 1 cut(s) 253
Tsp45I GTSAC 1 cut(s) 253
TspDTI ATGAA 3 cut(s) 254, 441, 474
TspRI CASTG 1 cut(s) 262
XapI RAATTY 1 cut(s) 385
XmiI GTMKAC 1 cut(s) 119
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.