Rroxscaffold_6G00423840

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0001340
Physical Location & Seq
Forward (+)
45091513 .. 45096691
5179 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00423840.1

Sequence Viewer

Length: 360 bp
ATGAGCAAAGGTGATGGTGACAATGCTAATTTTCATATTGTTTCCGGTAGTAGTGATCAAATGAAGCACTTTACTTCACCGTCCGGAAGCATGAGACCAATGAGACATGCTTGTGATGAGTGGAGTGGTGAAGGATTCTCCCGTGGTGGTGTTGGTGGTGCTAGGCCTCCCAAGGAAGAGGTGGATTACGATAATCTTGACCCAAAAAAGTATAAGGGGTCGCGTATGATGCAAGAACAGATTGACAAGATAAGGGTAATTTGGGGAATCCCAGATGATGTATTGCTGCGCCCAATTAGGGATGGCAAGTATTTTAGCCTTCTCGAGTTGGGGTGGGTGTGCTTTTATGAATATCGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

119

Amino Acids

13.56

Weight (kDa)

6.28

Isoelectric Point (pI)

36.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 223
AccIII TCCGGA 1 cut(s) 83
AfiI CCNNNNNNNGG 1 cut(s) 298
Alw26I GTCTC 2 cut(s) 88, 97
Ama87I CYCGRG 1 cut(s) 323
Aor13HI TCCGGA 1 cut(s) 83
AoxI GGCC 1 cut(s) 164
ApeKI GCWGC 1 cut(s) 286
AspLEI GCGC 1 cut(s) 291
AsuHPI GGTGA 4 cut(s) 23, 29, 69, 140
AvaI CYCGRG 1 cut(s) 323
BbvI GCAGC 1 cut(s) 273
BccI CCATC 2 cut(s) 8, 296
BclI TGATCA 1 cut(s) 55
BcoDI GTCTC 2 cut(s) 88, 97
BfaI CTAG 1 cut(s) 162
BisI GCNGC 1 cut(s) 287
BlsI GCNGC 1 cut(s) 288
BmeT110I CYCGRG 1 cut(s) 323
BmsI GCATC 1 cut(s) 219
BsaI GGTCTC 1 cut(s) 88
BsaJI CCNNGG 2 cut(s) 142, 171
BsaWI WCCGGW 2 cut(s) 44, 83
Bsc4I CCNNNNNNNGG 1 cut(s) 298
BseAI TCCGGA 1 cut(s) 83
BseDI CCNNGG 2 cut(s) 142, 171
BseGI GGATG 1 cut(s) 307
BseLI CCNNNNNNNGG 1 cut(s) 298
BseXI GCAGC 1 cut(s) 273
Bsh1236I CGCG 1 cut(s) 223
BshFI GGCC 1 cut(s) 166
BsiHKCI CYCGRG 1 cut(s) 323
BsiSI CCGG 2 cut(s) 45, 84
BslI CCNNNNNNNGG 1 cut(s) 298
BsmAI GTCTC 2 cut(s) 88, 97
BsnI GGCC 1 cut(s) 166
Bso31I GGTCTC 1 cut(s) 88
BsoBI CYCGRG 1 cut(s) 323
Bsp13I TCCGGA 1 cut(s) 83
Bsp143I GATC 1 cut(s) 55
BspANI GGCC 1 cut(s) 166
BspEI TCCGGA 1 cut(s) 83
BspFNI CGCG 1 cut(s) 223
BspTNI GGTCTC 1 cut(s) 88
BssECI CCNNGG 2 cut(s) 142, 171
BssMI GATC 1 cut(s) 55
BssT1I CCWWGG 1 cut(s) 171
Bst4CI ACNGT 1 cut(s) 81
Bst6I CTCTTC 1 cut(s) 171
BstDSI CCRYGG 1 cut(s) 142
BstF5I GGATG 1 cut(s) 307
BstFNI CGCG 1 cut(s) 223
BstHHI GCGC 1 cut(s) 291
BstKTI GATC 1 cut(s) 58
BstMAI GTCTC 2 cut(s) 88, 97
BstMBI GATC 1 cut(s) 55
BstMWI GCNNNNNNNGC 1 cut(s) 229
BstNSI RCATGY 1 cut(s) 110
BstUI CGCG 1 cut(s) 223
BstV1I GCAGC 1 cut(s) 273
BsuRI GGCC 1 cut(s) 166
BtgI CCRYGG 1 cut(s) 142
BtsCI GGATG 1 cut(s) 307
CfoI GCGC 1 cut(s) 291
CviAII CATG 2 cut(s) 91, 107
CviJI RGCY 2 cut(s) 166, 318
CviKI_1 RGCY 2 cut(s) 166, 318
DpnI GATC 1 cut(s) 57
DpnII GATC 1 cut(s) 55
Eam1104I CTCTTC 1 cut(s) 171
EarI CTCTTC 1 cut(s) 171
Eco130I CCWWGG 1 cut(s) 171
Eco147I AGGCCT 1 cut(s) 166
Eco31I GGTCTC 1 cut(s) 88
Eco88I CYCGRG 1 cut(s) 323
EcoT14I CCWWGG 1 cut(s) 171
ErhI CCWWGG 1 cut(s) 171
FaeI CATG 2 cut(s) 94, 110
FaiI YATR 6 cut(s) 36, 92, 108, 213, 227, 348
FatI CATG 2 cut(s) 90, 106
FbaI TGATCA 1 cut(s) 55
Fnu4HI GCNGC 1 cut(s) 287
FokI GGATG 1 cut(s) 314
Fsp4HI GCNGC 1 cut(s) 287
FspBI CTAG 1 cut(s) 162
GlaI GCGC 1 cut(s) 290
GluI GCNGC 1 cut(s) 287
HaeIII GGCC 1 cut(s) 166
HapII CCGG 2 cut(s) 45, 84
HhaI GCGC 1 cut(s) 291
Hin1II CATG 2 cut(s) 94, 110
Hin6I GCGC 1 cut(s) 289
HinP1I GCGC 1 cut(s) 289
HinfI GANTC 2 cut(s) 135, 267
HpaII CCGG 2 cut(s) 45, 84
HphI GGTGA 4 cut(s) 23, 29, 69, 140
Hpy188III TCNNGA 3 cut(s) 84, 197, 323
HpyAV CCTTC 2 cut(s) 125, 329
HpyCH4III ACNGT 1 cut(s) 81
HpyCH4V TGCA 1 cut(s) 232
HpyF10VI GCNNNNNNNGC 1 cut(s) 229
Hsp92II CATG 2 cut(s) 94, 110
HspAI GCGC 1 cut(s) 289
Kpn2I TCCGGA 1 cut(s) 83
Ksp22I TGATCA 1 cut(s) 55
Kzo9I GATC 1 cut(s) 55
LpnPI CCDG 3 cut(s) 58, 97, 285
Lsp1109I GCAGC 1 cut(s) 273
LweI GCATC 1 cut(s) 219
MaeI CTAG 1 cut(s) 162
MaeIII GTNAC 1 cut(s) 17
MalI GATC 1 cut(s) 57
MboI GATC 1 cut(s) 55
MboII GAAGA 1 cut(s) 188
MluCI AATT 3 cut(s) 28, 258, 294
MnlI CCTC 2 cut(s) 172, 177
MroI TCCGGA 1 cut(s) 83
MseI TTAA 1 cut(s) 358
MslI CAYNNNNRTG 1 cut(s) 111
MspI CCGG 2 cut(s) 45, 84
MvnI CGCG 1 cut(s) 223
MwoI GCNNNNNNNGC 1 cut(s) 229
NdeII GATC 1 cut(s) 55
NlaIII CATG 2 cut(s) 94, 110
NmuCI GTSAC 1 cut(s) 17
NspI RCATGY 1 cut(s) 110
PaeR7I CTCGAG 1 cut(s) 323
PceI AGGCCT 1 cut(s) 166
PfeI GAWTC 2 cut(s) 135, 267
PkrI GCNGC 1 cut(s) 288
RseI CAYNNNNRTG 1 cut(s) 111
SaqAI TTAA 1 cut(s) 358
SatI GCNGC 1 cut(s) 287
Sau3AI GATC 1 cut(s) 55
SetI ASST 2 cut(s) 13, 183
SfaNI GCATC 1 cut(s) 219
Sfr274I CTCGAG 1 cut(s) 323
SlaI CTCGAG 1 cut(s) 323
SmiMI CAYNNNNRTG 1 cut(s) 111
SmlI CTYRAG 1 cut(s) 323
SmoI CTYRAG 1 cut(s) 323
Sse9I AATT 3 cut(s) 28, 258, 294
SseBI AGGCCT 1 cut(s) 166
SspMI CTAG 1 cut(s) 162
StuI AGGCCT 1 cut(s) 166
StyI CCWWGG 1 cut(s) 171
TaaI ACNGT 1 cut(s) 81
TaqI TCGA 1 cut(s) 324
TasI AATT 3 cut(s) 28, 258, 294
TfiI GAWTC 2 cut(s) 135, 267
Tru1I TTAA 1 cut(s) 358
Tru9I TTAA 1 cut(s) 358
TseFI GTSAC 1 cut(s) 17
TseI GCWGC 1 cut(s) 286
Tsp45I GTSAC 1 cut(s) 17
TspDTI ATGAA 2 cut(s) 23, 77
XceI RCATGY 1 cut(s) 110
XcmI CCANNNNNNNNNTGG 1 cut(s) 178
XhoI CTCGAG 1 cut(s) 323
XspI CTAG 1 cut(s) 162
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.