Rh4CG055700
NAC Family

Chromatin structure-remodeling complex protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0001340
Physical Location & Seq
Reverse (-)
10922207 .. 10927445
5239 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG055700.1

Sequence Viewer

Length: 843 bp
ATGGTGCAAGTTCTAATGAGATGCCAGCTTCGTCACATAATGTTTGAGTTGGAAGCAACCAAGTTTCTGCACAAACTCATTCAGGACTCTACAGATGAGCCGGCCAAACTTGCCACCAAGCTCTATATGGAAGCTGTGCAGTGGTTGATTCCAGCCATTTTGAGAGCTATAGCTCTGGCCATGGAGACTGTTATTAATCAACATGGCCTTGATATTGAGGCTTTGAAGTCATCACGCATTCCTTTGTCCAGTGGAGCTCACACAGGTGATTGGGCCAACATATTTCTGCAGGGTCTAGCTTCTCAGGCTGCTGGAGTTGCAAAAGATTCCAATTCAGGCTTGGCCGAAACTGAGGTGTCTAAGATGGACCCATTTTCTTCAAGTAGACCACCTGTTGGACCTATCAGTACAGGGCATGACCATTATCAAGGATCTGCAACTCATCGAAGTAGTCAGTCTTTTGATCATGAAACTCCATCTAGTTTAGACTCTAGGTCTGCCAATTCACAGTCCCAAGAAAGGTGTGATACAGAAAACCGGGACAAGCAGATGAATCGAAAGGATATATTAAAAAAGCCACCACCAAGAAGAGGAAGAGGGGAGAGAGTTCTGTACCCACAGGATCACAACTTGACAACCCGCCAAAATCTTGATACTATAGACAGCGTGGTGCGTGAGACAGTGTCAAAAATTGTATCTGAAAACATGGAGTTGCAGCCATCTTCAACAGTGCAGGAGTTGGAATCTGAAGAAGTTGATGGGTCTCAGGTTTGTGAGACACTGTTGGAATTTGTACCTGAGAACATGGATTTGCAGCCATCTTCAACAGTGCAGGAGTCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000166 GO:0000228 GO:0000785 GO:0000790 GO:0000988 GO:0000990 GO:0000991 GO:0002831 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005829 GO:0006139 GO:0006325 GO:0006338 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0006950 GO:0006996 GO:0007275 GO:0008026 GO:0008094 GO:0008144 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009611 GO:0009653 GO:0009791 GO:0009889 GO:0009908 GO:0009966 GO:0009987 GO:0010104 GO:0010199 GO:0010467 GO:0010468 GO:0010556 GO:0010646 GO:0010959 GO:0016043 GO:0016070 GO:0016462 GO:0016514 GO:0016586 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017076 GO:0017111 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022414 GO:0023051 GO:0030554 GO:0031323 GO:0031326 GO:0031347 GO:0031974 GO:0031981 GO:0032101 GO:0032392 GO:0032501 GO:0032502 GO:0032508 GO:0032553 GO:0032555 GO:0032559 GO:0032774 GO:0032879 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0034756 GO:0035639 GO:0036094 GO:0040029 GO:0042623 GO:0043044 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043269 GO:0043900 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0048367 GO:0048583 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0048859 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051171 GO:0051252 GO:0051276 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0070035 GO:0070297 GO:0070603 GO:0071103 GO:0071704 GO:0071840 GO:0080090 GO:0080134 GO:0090304 GO:0090567 GO:0090691 GO:0097159 GO:0097367 GO:0097659 GO:0140097 GO:0140110 GO:1900150 GO:1900390 GO:1900393 GO:1900400 GO:1901265 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902494 GO:1902531 GO:1903506 GO:1904949 GO:2000022 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04714 ko05225 map04714 map05225
Pfam Domains
Protein Families
Helicase_C SNF2_N SnAC

Protein Analysis

280

Amino Acids

31.14

Weight (kDa)

5.23

Isoelectric Point (pI)

63.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 395
AccI GTMKAC 1 cut(s) 385
AciI CCGC 1 cut(s) 640
AclWI GGATC 2 cut(s) 439, 630
AcoI YGGCCR 3 cut(s) 102, 177, 342
AcsI RAATTY 1 cut(s) 788
AcuI CTGAAG 1 cut(s) 768
AfaI GTAC 3 cut(s) 409, 614, 795
AfiI CCNNNNNNNGG 3 cut(s) 395, 519, 590
AgsI TTSAA 4 cut(s) 226, 381, 726, 825
AhdI GACNNNNNGTC 1 cut(s) 493
AleI CACNNNNGTG 1 cut(s) 264
AluBI AGCT 7 cut(s) 28, 121, 134, 167, 173, 257, 299
AluI AGCT 7 cut(s) 28, 121, 134, 167, 173, 257, 299
Alw21I GWGCWC 1 cut(s) 259
Alw26I GTCTC 4 cut(s) 179, 671, 768, 770
AlwI GGATC 2 cut(s) 439, 630
AoxI GGCC 5 cut(s) 102, 177, 205, 273, 342
ApeKI GCWGC 3 cut(s) 308, 715, 814
ApoI RAATTY 1 cut(s) 788
AseI ATTAAT 1 cut(s) 195
AspS9I GGNCC 3 cut(s) 273, 367, 398
AsuC2I CCSGG 1 cut(s) 539
AsuHPI GGTGA 1 cut(s) 278
AvaII GGWCC 2 cut(s) 367, 398
BalI TGGCCA 1 cut(s) 179
BanII GRGCYC 1 cut(s) 259
Bbv12I GWGCWC 1 cut(s) 259
BbvI GCAGC 3 cut(s) 295, 727, 826
BccI CCATC 5 cut(s) 358, 484, 727, 752, 826
BcgI CGANNNNNNTGC 2 cut(s) 536, 570
BclI TGATCA 1 cut(s) 463
BcnI CCSGG 1 cut(s) 539
BcoDI GTCTC 4 cut(s) 179, 671, 768, 770
BfaI CTAG 3 cut(s) 296, 480, 492
BfmI CTRYAG 4 cut(s) 90, 168, 287, 657
BisI GCNGC 3 cut(s) 309, 716, 815
BlsI GCNGC 3 cut(s) 310, 717, 816
Bme1390I CCNGG 1 cut(s) 539
Bme18I GGWCC 2 cut(s) 367, 398
BmeRI GACNNNNNGTC 1 cut(s) 493
BmgT120I GGNCC 3 cut(s) 273, 367, 398
BmiI GGNNCC 1 cut(s) 369
BmrFI CCNGG 1 cut(s) 539
BmsI GCATC 1 cut(s) 11
BpmI CTGGAG 1 cut(s) 333
BpuMI CCSGG 1 cut(s) 539
BsaI GGTCTC 1 cut(s) 768
BsaJI CCNNGG 1 cut(s) 180
Bsc4I CCNNNNNNNGG 3 cut(s) 395, 519, 590
Bse118I RCCGGY 1 cut(s) 100
Bse1I ACTGG 1 cut(s) 249
BseDI CCNNGG 1 cut(s) 180
BseLI CCNNNNNNNGG 3 cut(s) 395, 519, 590
BseMII CTCAG 4 cut(s) 317, 342, 779, 789
BseNI ACTGG 1 cut(s) 249
BseXI GCAGC 3 cut(s) 295, 727, 826
BsgI GTGCAG 3 cut(s) 53, 158, 752
BshFI GGCC 5 cut(s) 104, 179, 207, 275, 344
BsiHKAI GWGCWC 1 cut(s) 259
BsiSI CCGG 2 cut(s) 101, 538
BslFI GGGAC 2 cut(s) 496, 554
BslI CCNNNNNNNGG 3 cut(s) 395, 519, 590
BsmAI GTCTC 4 cut(s) 179, 671, 768, 770
BsmFI GGGAC 2 cut(s) 496, 554
BsmI GAATGC 1 cut(s) 237
BsnI GGCC 5 cut(s) 104, 179, 207, 275, 344
Bso31I GGTCTC 1 cut(s) 768
Bsp1286I GDGCHC 1 cut(s) 259
Bsp143I GATC 3 cut(s) 431, 463, 622
Bsp19I CCATGG 1 cut(s) 180
BspACI CCGC 1 cut(s) 640
BspANI GGCC 5 cut(s) 104, 179, 207, 275, 344
BspCNI CTCAG 4 cut(s) 316, 343, 778, 790
BspHI TCATGA 1 cut(s) 466
BspLI GGNNCC 1 cut(s) 369
BspMAI CTGCAG 1 cut(s) 291
BspPI GGATC 2 cut(s) 439, 630
BspTNI GGTCTC 1 cut(s) 768
BsrFI RCCGGY 1 cut(s) 100
BsrI ACTGG 1 cut(s) 249
BssAI RCCGGY 1 cut(s) 100
BssECI CCNNGG 1 cut(s) 180
BssMI GATC 3 cut(s) 431, 463, 622
BssT1I CCWWGG 1 cut(s) 180
Bst4CI ACNGT 6 cut(s) 190, 510, 682, 730, 783, 829
Bst6I CTCTTC 2 cut(s) 583, 589
BstC8I GCNNGC 2 cut(s) 26, 102
BstDEI CTNAG 5 cut(s) 303, 351, 360, 765, 798
BstDSI CCRYGG 1 cut(s) 180
BstKTI GATC 3 cut(s) 434, 466, 625
BstMAI GTCTC 4 cut(s) 179, 671, 768, 770
BstMBI GATC 3 cut(s) 431, 463, 622
BstMWI GCNNNNNNNGC 3 cut(s) 110, 305, 317
BstSCI CCNGG 1 cut(s) 537
BstSFI CTRYAG 4 cut(s) 90, 168, 287, 657
BstV1I GCAGC 3 cut(s) 295, 727, 826
BstX2I RGATCY 1 cut(s) 431
BstYI RGATCY 1 cut(s) 431
BsuRI GGCC 5 cut(s) 104, 179, 207, 275, 344
BtgI CCRYGG 1 cut(s) 180
BtsI GCAGTG 1 cut(s) 146
BtsIMutI CAGTG 6 cut(s) 146, 256, 687, 735, 779, 834
Cac8I GCNNGC 2 cut(s) 26, 102
CciI TCATGA 1 cut(s) 466
Cfr10I RCCGGY 1 cut(s) 100
Cfr13I GGNCC 3 cut(s) 273, 367, 398
Csp6I GTAC 3 cut(s) 408, 613, 794
CviAII CATG 6 cut(s) 181, 203, 416, 467, 706, 805
CviQI GTAC 3 cut(s) 408, 613, 794
DdeI CTNAG 5 cut(s) 303, 351, 360, 765, 798
DpnI GATC 3 cut(s) 433, 465, 624
DpnII GATC 3 cut(s) 431, 463, 622
DriI GACNNNNNGTC 1 cut(s) 493
EaeI YGGCCR 3 cut(s) 102, 177, 342
Eam1104I CTCTTC 2 cut(s) 583, 589
Eam1105I GACNNNNNGTC 1 cut(s) 493
EarI CTCTTC 2 cut(s) 583, 589
Ecl136II GAGCTC 1 cut(s) 257
Eco130I CCWWGG 1 cut(s) 180
Eco24I GRGCYC 1 cut(s) 259
Eco31I GGTCTC 1 cut(s) 768
Eco47I GGWCC 2 cut(s) 367, 398
Eco53kI GAGCTC 1 cut(s) 257
Eco57I CTGAAG 1 cut(s) 768
EcoICRI GAGCTC 1 cut(s) 257
EcoT14I CCWWGG 1 cut(s) 180
EcoT38I GRGCYC 1 cut(s) 259
ErhI CCWWGG 1 cut(s) 180
FaeI CATG 6 cut(s) 184, 206, 419, 470, 709, 808
FaqI GGGAC 2 cut(s) 496, 554
FatI CATG 6 cut(s) 180, 202, 415, 466, 705, 804
FauI CCCGC 1 cut(s) 647
FbaI TGATCA 1 cut(s) 463
FblI GTMKAC 1 cut(s) 385
Fnu4HI GCNGC 3 cut(s) 309, 716, 815
FriOI GRGCYC 1 cut(s) 259
Fsp4HI GCNGC 3 cut(s) 309, 716, 815
FspBI CTAG 3 cut(s) 296, 480, 492
GluI GCNGC 3 cut(s) 309, 716, 815
GsuI CTGGAG 1 cut(s) 333
HaeIII GGCC 5 cut(s) 104, 179, 207, 275, 344
HapII CCGG 2 cut(s) 101, 538
Hin1II CATG 6 cut(s) 184, 206, 419, 470, 709, 808
HinfI GANTC 7 cut(s) 86, 148, 326, 488, 553, 743, 836
HpaII CCGG 2 cut(s) 101, 538
HphI GGTGA 1 cut(s) 278
Hpy166II GTNNAC 1 cut(s) 386
Hpy188I TCNGA 2 cut(s) 700, 748
Hpy188III TCNNGA 3 cut(s) 83, 467, 650
Hpy8I GTNNAC 1 cut(s) 386
HpyCH4III ACNGT 6 cut(s) 190, 510, 682, 730, 783, 829
HpyF10VI GCNNNNNNNGC 3 cut(s) 110, 305, 317
HpyF3I CTNAG 5 cut(s) 303, 351, 360, 765, 798
Hsp92II CATG 6 cut(s) 184, 206, 419, 470, 709, 808
KroI GCCGGC 1 cut(s) 100
KroNI GCCGGC 1 cut(s) 102
Ksp22I TGATCA 1 cut(s) 463
Kzo9I GATC 3 cut(s) 431, 463, 622
LmnI GCTCC 1 cut(s) 254
Lsp1109I GCAGC 3 cut(s) 295, 727, 826
LweI GCATC 1 cut(s) 11
MaeI CTAG 3 cut(s) 296, 480, 492
MaeIII GTNAC 1 cut(s) 32
MalI GATC 3 cut(s) 433, 465, 624
MboI GATC 3 cut(s) 431, 463, 622
MboII GAAGA 6 cut(s) 369, 600, 606, 714, 761, 813
MflI RGATCY 1 cut(s) 431
MhlI GDGCHC 1 cut(s) 259
MlsI TGGCCA 1 cut(s) 179
MluCI AATT 4 cut(s) 331, 502, 690, 788
MluNI TGGCCA 1 cut(s) 179
MlyI GAGTC 2 cut(s) 80, 482
MmeI TCCRAC 4 cut(s) 30, 376, 720, 765
MnlI CCTC 4 cut(s) 211, 346, 584, 590
Mox20I TGGCCA 1 cut(s) 179
MroNI GCCGGC 1 cut(s) 100
MscI TGGCCA 1 cut(s) 179
MseI TTAA 2 cut(s) 195, 569
MslI CAYNNNNRTG 1 cut(s) 264
Msp20I TGGCCA 1 cut(s) 179
MspI CCGG 2 cut(s) 101, 538
MspR9I CCNGG 1 cut(s) 539
Mva1269I GAATGC 1 cut(s) 237
MwoI GCNNNNNNNGC 3 cut(s) 110, 305, 317
NaeI GCCGGC 1 cut(s) 102
NciI CCSGG 1 cut(s) 539
NcoI CCATGG 1 cut(s) 180
NdeII GATC 3 cut(s) 431, 463, 622
NgoMIV GCCGGC 1 cut(s) 100
NlaIII CATG 6 cut(s) 184, 206, 419, 470, 709, 808
NlaIV GGNNCC 1 cut(s) 369
NmuCI GTSAC 1 cut(s) 32
OliI CACNNNNGTG 1 cut(s) 264
PagI TCATGA 1 cut(s) 466
PctI GAATGC 1 cut(s) 237
PdiI GCCGGC 1 cut(s) 102
PfeI GAWTC 4 cut(s) 148, 326, 553, 743
PflFI GACNNNGTC 1 cut(s) 682
PflMI CCANNNNNTGG 1 cut(s) 395
PkrI GCNGC 3 cut(s) 310, 717, 816
PleI GAGTC 2 cut(s) 80, 482
PpsI GAGTC 2 cut(s) 80, 482
PshBI ATTAAT 1 cut(s) 195
Psp124BI GAGCTC 1 cut(s) 259
PspN4I GGNNCC 1 cut(s) 369
PspPI GGNCC 3 cut(s) 273, 367, 398
PstI CTGCAG 1 cut(s) 291
PsuI RGATCY 1 cut(s) 431
PsyI GACNNNGTC 1 cut(s) 682
RsaI GTAC 3 cut(s) 409, 614, 795
RsaNI GTAC 3 cut(s) 408, 613, 794
RseI CAYNNNNRTG 1 cut(s) 264
SacI GAGCTC 1 cut(s) 259
SaqAI TTAA 2 cut(s) 195, 569
SatI GCNGC 3 cut(s) 309, 716, 815
Sau3AI GATC 3 cut(s) 431, 463, 622
Sau96I GGNCC 3 cut(s) 273, 367, 398
SchI GAGTC 2 cut(s) 80, 482
ScrFI CCNGG 1 cut(s) 539
SduI GDGCHC 1 cut(s) 259
SfaNI GCATC 1 cut(s) 11
SfcI CTRYAG 4 cut(s) 90, 168, 287, 657
SinI GGWCC 2 cut(s) 367, 398
SmiMI CAYNNNNRTG 1 cut(s) 264
Sse9I AATT 4 cut(s) 331, 502, 690, 788
SsiI CCGC 1 cut(s) 640
SspMI CTAG 3 cut(s) 296, 480, 492
SstI GAGCTC 1 cut(s) 259
StyD4I CCNGG 1 cut(s) 537
StyI CCWWGG 1 cut(s) 180
TaaI ACNGT 6 cut(s) 190, 510, 682, 730, 783, 829
TaqI TCGA 2 cut(s) 445, 556
TasI AATT 4 cut(s) 331, 502, 690, 788
TatI WGTACW 1 cut(s) 407
TfiI GAWTC 4 cut(s) 148, 326, 553, 743
Tru1I TTAA 2 cut(s) 195, 569
Tru9I TTAA 2 cut(s) 195, 569
TscAI CASTG 6 cut(s) 146, 256, 687, 735, 786, 834
TseFI GTSAC 1 cut(s) 32
TseI GCWGC 3 cut(s) 308, 715, 814
Tsp45I GTSAC 1 cut(s) 32
TspDTI ATGAA 2 cut(s) 483, 566
TspRI CASTG 6 cut(s) 146, 256, 687, 735, 786, 834
Tth111I GACNNNGTC 1 cut(s) 682
Van91I CCANNNNNTGG 1 cut(s) 395
VpaK11BI GGWCC 2 cut(s) 367, 398
VspI ATTAAT 1 cut(s) 195
XapI RAATTY 1 cut(s) 788
XcmI CCANNNNNNNNNTGG 2 cut(s) 124, 337
XmiI GTMKAC 1 cut(s) 385
XspI CTAG 3 cut(s) 296, 480, 492
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.