Rh4BG049000
NAC Family

Chromatin structure-remodeling complex protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0001340
Physical Location & Seq
Reverse (-)
8740632 .. 8741267
636 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG049000.1

Sequence Viewer

Length: 636 bp
ATGGACCCATTTGCTTCAAGTAGACCACCTGCTGGACCTATCCGTACAGGGCATGACCATTATCAAGGATCTGCAACTCATCGAAGTAGTCAGTCTTTTGATCATGAAACTCCATCTAGTTTAGACTCTAGGTCTGCCAATTCACAGTCCCAAGAAAGGTGTGATACAGAAAACCGGGACAAGAAGAGGAAGAGGAAGAGGAAGAGAGTTCTGTACCCACAGGATCACAACTTGACAACCCGCCAAAATCTTGATACTATAGACAGTGTGGTTAGTACGAGGAAGGGAAAGATGAGCAGAGATTTTTCAATTGAAGGTGGTGAAAATGCTAATTTTAAAGTTGTTCCCAGTAGTGATCAAATTGAGCACTTTACTTCACTATCTGGAAGCATGAGACCAATGGTTAGAGTCAAGCAAGAAGTTCAACATGTGATAGAAAGGCAGATGGCAATTTGGTGTCTCGGGCTGCAAGTTCAAAACACCGTTAAGAACTTGAAGTTTTCACTCAGCAGCATGCTGGTTCCCTACCTCCTACAAAGGACATTATGGGTGTGTGGAGTCAAACTAAACCTGGGTTTCCCTATGAAAAGTCTCAAGTGCCCAGGTTTTCTTCCAATGTTATCCCAGGTAATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000166 GO:0000228 GO:0000785 GO:0000790 GO:0000988 GO:0000990 GO:0000991 GO:0002831 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005829 GO:0006139 GO:0006325 GO:0006338 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0006950 GO:0006996 GO:0007275 GO:0008026 GO:0008094 GO:0008144 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009611 GO:0009653 GO:0009791 GO:0009889 GO:0009908 GO:0009966 GO:0009987 GO:0010104 GO:0010199 GO:0010467 GO:0010468 GO:0010556 GO:0010646 GO:0010959 GO:0016043 GO:0016070 GO:0016462 GO:0016514 GO:0016586 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017076 GO:0017111 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022414 GO:0023051 GO:0030554 GO:0031323 GO:0031326 GO:0031347 GO:0031974 GO:0031981 GO:0032101 GO:0032392 GO:0032501 GO:0032502 GO:0032508 GO:0032553 GO:0032555 GO:0032559 GO:0032774 GO:0032879 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0034756 GO:0035639 GO:0036094 GO:0040029 GO:0042623 GO:0043044 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043269 GO:0043900 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0048367 GO:0048583 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0048859 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051171 GO:0051252 GO:0051276 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0070035 GO:0070297 GO:0070603 GO:0071103 GO:0071704 GO:0071840 GO:0080090 GO:0080134 GO:0090304 GO:0090567 GO:0090691 GO:0097159 GO:0097367 GO:0097659 GO:0140097 GO:0140110 GO:1900150 GO:1900390 GO:1900393 GO:1900400 GO:1901265 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902494 GO:1902531 GO:1903506 GO:1904949 GO:2000022 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04714 ko05225 map04714 map05225
Pfam Domains
Protein Families
Helicase_C SNF2_N SnAC

Protein Analysis

211

Amino Acids

23.98

Weight (kDa)

9.88

Isoelectric Point (pI)

66.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 37
Acc36I ACCTGC 1 cut(s) 37
AccB7I CCANNNNNTGG 1 cut(s) 32
AccI GTMKAC 1 cut(s) 22
AciI CCGC 1 cut(s) 241
AclWI GGATC 2 cut(s) 76, 231
AfaI GTAC 3 cut(s) 46, 215, 277
AfiI CCNNNNNNNGG 2 cut(s) 32, 156
AflIII ACRYGT 1 cut(s) 427
AgsI TTSAA 6 cut(s) 18, 309, 314, 425, 476, 496
AhdI GACNNNNNGTC 1 cut(s) 130
AjnI CCWGG 3 cut(s) 570, 601, 624
Alw21I GWGCWC 1 cut(s) 369
Alw26I GTCTC 3 cut(s) 388, 464, 596
AlwI GGATC 2 cut(s) 76, 231
Ama87I CYCGRG 1 cut(s) 461
ApeKI GCWGC 2 cut(s) 466, 510
AspS9I GGNCC 2 cut(s) 4, 35
AsuC2I CCSGG 1 cut(s) 176
AsuHPI GGTGA 1 cut(s) 332
AvaI CYCGRG 1 cut(s) 461
AvaII GGWCC 2 cut(s) 4, 35
BaeGI GKGCMC 1 cut(s) 602
Bbv12I GWGCWC 1 cut(s) 369
BbvI GCAGC 2 cut(s) 453, 522
BccI CCATC 2 cut(s) 121, 439
BciT130I CCWGG 3 cut(s) 572, 603, 626
BclI TGATCA 2 cut(s) 100, 355
BcnI CCSGG 1 cut(s) 176
BcoDI GTCTC 3 cut(s) 388, 464, 596
BfaI CTAG 2 cut(s) 117, 129
BfmI CTRYAG 1 cut(s) 258
BfuAI ACCTGC 1 cut(s) 37
BisI GCNGC 2 cut(s) 467, 511
BlsI GCNGC 2 cut(s) 468, 512
Bme1390I CCNGG 4 cut(s) 176, 572, 603, 626
Bme18I GGWCC 2 cut(s) 4, 35
BmeRI GACNNNNNGTC 1 cut(s) 130
BmeT110I CYCGRG 1 cut(s) 461
BmgT120I GGNCC 2 cut(s) 4, 35
BmiI GGNNCC 2 cut(s) 6, 522
BmrFI CCNGG 4 cut(s) 176, 572, 603, 626
BmrI ACTGGG 1 cut(s) 342
BmuI ACTGGG 1 cut(s) 342
BpuEI CTTGAG 1 cut(s) 578
BpuMI CCSGG 1 cut(s) 176
BsaI GGTCTC 1 cut(s) 388
BsaJI CCNNGG 3 cut(s) 571, 601, 624
Bsc4I CCNNNNNNNGG 2 cut(s) 32, 156
Bse1I ACTGG 1 cut(s) 348
BseBI CCWGG 3 cut(s) 572, 603, 626
BseDI CCNNGG 3 cut(s) 571, 601, 624
BseLI CCNNNNNNNGG 2 cut(s) 32, 156
BseMII CTCAG 1 cut(s) 520
BseNI ACTGG 1 cut(s) 348
BseSI GKGCMC 1 cut(s) 602
BseXI GCAGC 2 cut(s) 453, 522
BsiHKAI GWGCWC 1 cut(s) 369
BsiHKCI CYCGRG 1 cut(s) 461
BsiSI CCGG 1 cut(s) 175
BslFI GGGAC 2 cut(s) 133, 191
BslI CCNNNNNNNGG 2 cut(s) 32, 156
BsmAI GTCTC 3 cut(s) 388, 464, 596
BsmFI GGGAC 2 cut(s) 133, 191
Bso31I GGTCTC 1 cut(s) 388
BsoBI CYCGRG 1 cut(s) 461
Bsp1286I GDGCHC 2 cut(s) 369, 602
Bsp143I GATC 4 cut(s) 68, 100, 223, 355
BspACI CCGC 1 cut(s) 241
BspCNI CTCAG 1 cut(s) 519
BspHI TCATGA 1 cut(s) 103
BspLI GGNNCC 2 cut(s) 6, 522
BspMI ACCTGC 1 cut(s) 37
BspPI GGATC 2 cut(s) 76, 231
BspTNI GGTCTC 1 cut(s) 388
BsrI ACTGG 1 cut(s) 348
BssECI CCNNGG 3 cut(s) 571, 601, 624
BssMI GATC 4 cut(s) 68, 100, 223, 355
Bst2UI CCWGG 3 cut(s) 572, 603, 626
Bst4CI ACNGT 3 cut(s) 147, 266, 484
Bst6I CTCTTC 4 cut(s) 179, 185, 191, 197
BstC8I GCNNGC 1 cut(s) 515
BstDEI CTNAG 1 cut(s) 506
BstKTI GATC 4 cut(s) 71, 103, 226, 358
BstMAI GTCTC 3 cut(s) 388, 464, 596
BstMBI GATC 4 cut(s) 68, 100, 223, 355
BstNI CCWGG 3 cut(s) 572, 603, 626
BstNSI RCATGY 2 cut(s) 431, 517
BstSCI CCNGG 4 cut(s) 174, 570, 601, 624
BstSFI CTRYAG 1 cut(s) 258
BstSLI GKGCMC 1 cut(s) 602
BstV1I GCAGC 2 cut(s) 453, 522
BstX2I RGATCY 1 cut(s) 68
BstYI RGATCY 1 cut(s) 68
BtsIMutI CAGTG 1 cut(s) 271
BveI ACCTGC 1 cut(s) 37
Cac8I GCNNGC 1 cut(s) 515
CciI TCATGA 1 cut(s) 103
Cfr13I GGNCC 2 cut(s) 4, 35
Csp6I GTAC 3 cut(s) 45, 214, 276
CviAII CATG 5 cut(s) 53, 104, 391, 428, 514
CviJI RGCY 1 cut(s) 466
CviKI_1 RGCY 1 cut(s) 466
CviQI GTAC 3 cut(s) 45, 214, 276
DdeI CTNAG 1 cut(s) 506
DpnI GATC 4 cut(s) 70, 102, 225, 357
DpnII GATC 4 cut(s) 68, 100, 223, 355
DraI TTTAAA 1 cut(s) 337
DriI GACNNNNNGTC 1 cut(s) 130
Eam1104I CTCTTC 4 cut(s) 179, 185, 191, 197
Eam1105I GACNNNNNGTC 1 cut(s) 130
EarI CTCTTC 4 cut(s) 179, 185, 191, 197
Eco31I GGTCTC 1 cut(s) 388
Eco47I GGWCC 2 cut(s) 4, 35
Eco88I CYCGRG 1 cut(s) 461
EcoRII CCWGG 3 cut(s) 570, 601, 624
FaeI CATG 5 cut(s) 56, 107, 394, 431, 517
FaiI YATR 8 cut(s) 54, 105, 260, 392, 429, 515, 547, 584
FaqI GGGAC 2 cut(s) 133, 191
FatI CATG 5 cut(s) 52, 103, 390, 427, 513
FauI CCCGC 1 cut(s) 248
FbaI TGATCA 2 cut(s) 100, 355
FblI GTMKAC 1 cut(s) 22
Fnu4HI GCNGC 2 cut(s) 467, 511
Fsp4HI GCNGC 2 cut(s) 467, 511
FspBI CTAG 2 cut(s) 117, 129
GluI GCNGC 2 cut(s) 467, 511
HapII CCGG 1 cut(s) 175
Hin1II CATG 5 cut(s) 56, 107, 394, 431, 517
HinfI GANTC 3 cut(s) 125, 408, 558
HpaII CCGG 1 cut(s) 175
HphI GGTGA 1 cut(s) 332
Hpy166II GTNNAC 1 cut(s) 23
Hpy188III TCNNGA 3 cut(s) 104, 251, 384
Hpy8I GTNNAC 1 cut(s) 23
HpyAV CCTTC 2 cut(s) 277, 308
HpyCH4III ACNGT 3 cut(s) 147, 266, 484
HpyCH4V TGCA 2 cut(s) 74, 469
HpyF3I CTNAG 1 cut(s) 506
Hsp92II CATG 5 cut(s) 56, 107, 394, 431, 517
Ksp22I TGATCA 2 cut(s) 100, 355
Kzo9I GATC 4 cut(s) 68, 100, 223, 355
Lsp1109I GCAGC 2 cut(s) 453, 522
MaeI CTAG 2 cut(s) 117, 129
MalI GATC 4 cut(s) 70, 102, 225, 357
MboI GATC 4 cut(s) 68, 100, 223, 355
MboII GAAGA 5 cut(s) 196, 202, 208, 214, 602
MfeI CAATTG 1 cut(s) 309
MflI RGATCY 1 cut(s) 68
MhlI GDGCHC 2 cut(s) 369, 602
MluCI AATT 5 cut(s) 139, 309, 331, 360, 450
MlyI GAGTC 3 cut(s) 119, 417, 567
MnlI CCTC 5 cut(s) 180, 186, 192, 273, 539
MseI TTAA 2 cut(s) 336, 486
MspI CCGG 1 cut(s) 175
MspR9I CCNGG 4 cut(s) 176, 572, 603, 626
MunI CAATTG 1 cut(s) 309
MvaI CCWGG 3 cut(s) 572, 603, 626
NciI CCSGG 1 cut(s) 176
NdeII GATC 4 cut(s) 68, 100, 223, 355
NlaIII CATG 5 cut(s) 56, 107, 394, 431, 517
NlaIV GGNNCC 2 cut(s) 6, 522
NspI RCATGY 2 cut(s) 431, 517
PaeI GCATGC 1 cut(s) 517
PagI TCATGA 1 cut(s) 103
PaqCI CACCTGC 1 cut(s) 37
PciI ACATGT 1 cut(s) 427
PflMI CCANNNNNTGG 1 cut(s) 32
PkrI GCNGC 2 cut(s) 468, 512
PleI GAGTC 3 cut(s) 119, 416, 566
PpsI GAGTC 3 cut(s) 119, 416, 566
PscI ACATGT 1 cut(s) 427
Psp6I CCWGG 3 cut(s) 570, 601, 624
PspGI CCWGG 3 cut(s) 570, 601, 624
PspN4I GGNNCC 2 cut(s) 6, 522
PspPI GGNCC 2 cut(s) 4, 35
PsuI RGATCY 1 cut(s) 68
RsaI GTAC 3 cut(s) 46, 215, 277
RsaNI GTAC 3 cut(s) 45, 214, 276
SaqAI TTAA 2 cut(s) 336, 486
SatI GCNGC 2 cut(s) 467, 511
Sau3AI GATC 4 cut(s) 68, 100, 223, 355
Sau96I GGNCC 2 cut(s) 4, 35
SchI GAGTC 3 cut(s) 119, 417, 567
ScrFI CCNGG 4 cut(s) 176, 572, 603, 626
SduI GDGCHC 2 cut(s) 369, 602
SetI ASST 9 cut(s) 31, 40, 134, 161, 319, 531, 573, 607, 630
SfcI CTRYAG 1 cut(s) 258
SinI GGWCC 2 cut(s) 4, 35
SmlI CTYRAG 1 cut(s) 593
SmoI CTYRAG 1 cut(s) 593
SphI GCATGC 1 cut(s) 517
Sse9I AATT 5 cut(s) 139, 309, 331, 360, 450
SsiI CCGC 1 cut(s) 241
SspMI CTAG 2 cut(s) 117, 129
StyD4I CCNGG 4 cut(s) 174, 570, 601, 624
TaaI ACNGT 3 cut(s) 147, 266, 484
TaqI TCGA 1 cut(s) 82
TasI AATT 5 cut(s) 139, 309, 331, 360, 450
Tru1I TTAA 2 cut(s) 336, 486
Tru9I TTAA 2 cut(s) 336, 486
TscAI CASTG 1 cut(s) 271
TseI GCWGC 2 cut(s) 466, 510
TspDTI ATGAA 2 cut(s) 120, 599
TspGWI ACGGA 1 cut(s) 32
TspRI CASTG 1 cut(s) 271
Van91I CCANNNNNTGG 1 cut(s) 32
VpaK11BI GGWCC 2 cut(s) 4, 35
XceI RCATGY 2 cut(s) 431, 517
XmiI GTMKAC 1 cut(s) 22
XspI CTAG 2 cut(s) 117, 129
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.