Rroxscaffold_5G00361650
NAC Family

Chromatin structure-remodeling complex protein

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
Physical Location & Seq
Forward (+)
42362066 .. 42362486
421 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00361650.1

Sequence Viewer

Length: 330 bp
ATGGATTCTAGGCTTCCCTTACAAATTGATCAGGCAATGATAGACTTGGATAAGGTAGAAAAGAAGGATGAACTTGGAGTAAATGTCATATTGGCTGCTAAGACGGAAATGAAGGAAGGAAATATCGACAAAGGTGATGATTTTCATATTGTTTCCAGTAGTGATCAAATGAAGCACTTTACTTCAGCATGCGGAAGCATGAGACCAATGGTTAGAGTCAAGCAAGAAGAGCAACGAGTTAATAGAAAGCCAAATGGATTTGGCCAACACGGCAACTTGGTATCTCGAGCAATGGAGCTCCGAGAAAGTCAAAATTATGATGAATTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000166 GO:0000228 GO:0000785 GO:0000790 GO:0000988 GO:0000990 GO:0000991 GO:0002831 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005829 GO:0006139 GO:0006325 GO:0006338 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0006950 GO:0006996 GO:0007275 GO:0008026 GO:0008094 GO:0008144 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009611 GO:0009653 GO:0009791 GO:0009889 GO:0009908 GO:0009966 GO:0009987 GO:0010104 GO:0010199 GO:0010467 GO:0010468 GO:0010556 GO:0010646 GO:0010959 GO:0016043 GO:0016070 GO:0016462 GO:0016514 GO:0016586 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017076 GO:0017111 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022414 GO:0023051 GO:0030554 GO:0031323 GO:0031326 GO:0031347 GO:0031974 GO:0031981 GO:0032101 GO:0032392 GO:0032501 GO:0032502 GO:0032508 GO:0032553 GO:0032555 GO:0032559 GO:0032774 GO:0032879 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0034756 GO:0035639 GO:0036094 GO:0040029 GO:0042623 GO:0043044 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043269 GO:0043900 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0048367 GO:0048583 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0048859 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051171 GO:0051252 GO:0051276 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0070035 GO:0070297 GO:0070603 GO:0071103 GO:0071704 GO:0071840 GO:0080090 GO:0080134 GO:0090304 GO:0090567 GO:0090691 GO:0097159 GO:0097367 GO:0097659 GO:0140097 GO:0140110 GO:1900150 GO:1900390 GO:1900393 GO:1900400 GO:1901265 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902494 GO:1902531 GO:1903506 GO:1904949 GO:2000022 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

109

Amino Acids

12.41

Weight (kDa)

5.59

Isoelectric Point (pI)

45.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 192
AcoI YGGCCR 1 cut(s) 262
AcuI CTGAAG 1 cut(s) 168
AluBI AGCT 1 cut(s) 298
AluI AGCT 1 cut(s) 298
Alw21I GWGCWC 1 cut(s) 300
Alw26I GTCTC 1 cut(s) 196
Ama87I CYCGRG 1 cut(s) 285
AoxI GGCC 1 cut(s) 262
ApeKI GCWGC 1 cut(s) 95
AsuHPI GGTGA 1 cut(s) 146
AvaI CYCGRG 1 cut(s) 285
BalI TGGCCA 1 cut(s) 264
BanII GRGCYC 1 cut(s) 300
Bbv12I GWGCWC 1 cut(s) 300
BbvI GCAGC 1 cut(s) 82
BceAI ACGGC 1 cut(s) 286
BclI TGATCA 2 cut(s) 28, 163
BcoDI GTCTC 1 cut(s) 196
BfaI CTAG 1 cut(s) 9
BglI GCCNNNNNGGC 1 cut(s) 270
BisI GCNGC 1 cut(s) 96
BlsI GCNGC 1 cut(s) 97
BmeT110I CYCGRG 1 cut(s) 285
BsaI GGTCTC 1 cut(s) 196
BsaXI ACNNNNNCTCC 2 cut(s) 69, 99
Bse1I ACTGG 1 cut(s) 156
Bse3DI GCAATG 2 cut(s) 42, 297
BseGI GGATG 1 cut(s) 73
BseMI GCAATG 2 cut(s) 42, 297
BseNI ACTGG 1 cut(s) 156
BseXI GCAGC 1 cut(s) 82
BshFI GGCC 1 cut(s) 264
BsiHKAI GWGCWC 1 cut(s) 300
BsiHKCI CYCGRG 1 cut(s) 285
BsmAI GTCTC 1 cut(s) 196
BsnI GGCC 1 cut(s) 264
Bso31I GGTCTC 1 cut(s) 196
BsoBI CYCGRG 1 cut(s) 285
Bsp1286I GDGCHC 1 cut(s) 300
Bsp143I GATC 2 cut(s) 28, 163
BspACI CCGC 1 cut(s) 192
BspANI GGCC 1 cut(s) 264
BspQI GCTCTTC 1 cut(s) 222
BspTNI GGTCTC 1 cut(s) 196
BsrDI GCAATG 2 cut(s) 42, 297
BsrI ACTGG 1 cut(s) 156
BssMI GATC 2 cut(s) 28, 163
Bst6I CTCTTC 1 cut(s) 222
BstC8I GCNNGC 1 cut(s) 190
BstDEI CTNAG 1 cut(s) 99
BstF5I GGATG 1 cut(s) 73
BstKTI GATC 2 cut(s) 31, 166
BstMAI GTCTC 1 cut(s) 196
BstMBI GATC 2 cut(s) 28, 163
BstMWI GCNNNNNNNGC 2 cut(s) 229, 270
BstNSI RCATGY 1 cut(s) 192
BstV1I GCAGC 1 cut(s) 82
BsuRI GGCC 1 cut(s) 264
BtsCI GGATG 1 cut(s) 73
Cac8I GCNNGC 1 cut(s) 190
CviAII CATG 2 cut(s) 189, 199
CviJI RGCY 5 cut(s) 13, 95, 250, 264, 298
CviKI_1 RGCY 5 cut(s) 13, 95, 250, 264, 298
DdeI CTNAG 1 cut(s) 99
DpnI GATC 2 cut(s) 30, 165
DpnII GATC 2 cut(s) 28, 163
EaeI YGGCCR 1 cut(s) 262
Eam1104I CTCTTC 1 cut(s) 222
EarI CTCTTC 1 cut(s) 222
Ecl136II GAGCTC 1 cut(s) 298
Eco24I GRGCYC 1 cut(s) 300
Eco31I GGTCTC 1 cut(s) 196
Eco53kI GAGCTC 1 cut(s) 298
Eco57I CTGAAG 1 cut(s) 168
Eco88I CYCGRG 1 cut(s) 285
EcoICRI GAGCTC 1 cut(s) 298
EcoT38I GRGCYC 1 cut(s) 300
FaeI CATG 2 cut(s) 192, 202
FaiI YATR 5 cut(s) 89, 147, 190, 200, 318
FatI CATG 2 cut(s) 188, 198
FbaI TGATCA 2 cut(s) 28, 163
Fnu4HI GCNGC 1 cut(s) 96
FokI GGATG 1 cut(s) 80
FriOI GRGCYC 1 cut(s) 300
Fsp4HI GCNGC 1 cut(s) 96
FspBI CTAG 1 cut(s) 9
GluI GCNGC 1 cut(s) 96
HaeIII GGCC 1 cut(s) 264
Hin1II CATG 2 cut(s) 192, 202
HinfI GANTC 2 cut(s) 5, 216
HphI GGTGA 1 cut(s) 146
Hpy188I TCNGA 1 cut(s) 302
Hpy188III TCNNGA 1 cut(s) 285
HpyAV CCTTC 3 cut(s) 58, 106, 110
HpyF10VI GCNNNNNNNGC 2 cut(s) 229, 270
HpyF3I CTNAG 1 cut(s) 99
Hsp92II CATG 2 cut(s) 192, 202
Ksp22I TGATCA 2 cut(s) 28, 163
Kzo9I GATC 2 cut(s) 28, 163
LguI GCTCTTC 1 cut(s) 222
LmnI GCTCC 2 cut(s) 295, 303
LpnPI CCDG 2 cut(s) 17, 169
Lsp1109I GCAGC 1 cut(s) 82
MaeI CTAG 1 cut(s) 9
MalI GATC 2 cut(s) 30, 165
MboI GATC 2 cut(s) 28, 163
MboII GAAGA 1 cut(s) 239
MhlI GDGCHC 1 cut(s) 300
MlsI TGGCCA 1 cut(s) 264
MluCI AATT 3 cut(s) 24, 313, 323
MluNI TGGCCA 1 cut(s) 264
MlyI GAGTC 1 cut(s) 225
Mox20I TGGCCA 1 cut(s) 264
MscI TGGCCA 1 cut(s) 264
MseI TTAA 1 cut(s) 240
Msp20I TGGCCA 1 cut(s) 264
MwoI GCNNNNNNNGC 2 cut(s) 229, 270
NdeII GATC 2 cut(s) 28, 163
NlaIII CATG 2 cut(s) 192, 202
NspI RCATGY 1 cut(s) 192
PaeI GCATGC 1 cut(s) 192
PaeR7I CTCGAG 1 cut(s) 285
PciSI GCTCTTC 1 cut(s) 222
PfeI GAWTC 1 cut(s) 5
PkrI GCNGC 1 cut(s) 97
PleI GAGTC 1 cut(s) 224
PpsI GAGTC 1 cut(s) 224
Psp124BI GAGCTC 1 cut(s) 300
SacI GAGCTC 1 cut(s) 300
SapI GCTCTTC 1 cut(s) 222
SaqAI TTAA 1 cut(s) 240
SatI GCNGC 1 cut(s) 96
Sau3AI GATC 2 cut(s) 28, 163
SchI GAGTC 1 cut(s) 225
SduI GDGCHC 1 cut(s) 300
SetI ASST 3 cut(s) 57, 136, 300
Sfr274I CTCGAG 1 cut(s) 285
SlaI CTCGAG 1 cut(s) 285
SmlI CTYRAG 1 cut(s) 285
SmoI CTYRAG 1 cut(s) 285
SphI GCATGC 1 cut(s) 192
Sse9I AATT 3 cut(s) 24, 313, 323
SsiI CCGC 1 cut(s) 192
SspMI CTAG 1 cut(s) 9
SstI GAGCTC 1 cut(s) 300
TaqI TCGA 2 cut(s) 126, 286
TasI AATT 3 cut(s) 24, 313, 323
TfiI GAWTC 1 cut(s) 5
Tru1I TTAA 1 cut(s) 240
Tru9I TTAA 1 cut(s) 240
TseI GCWGC 1 cut(s) 95
TspDTI ATGAA 4 cut(s) 84, 125, 134, 185
TspGWI ACGGA 1 cut(s) 119
XceI RCATGY 1 cut(s) 192
XhoI CTCGAG 1 cut(s) 285
XspI CTAG 1 cut(s) 9
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.