Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007594.1

Orthogroup ID

OG0001340

Physical Location & Seq

Genomic Coordinates Forward (+)

3503 .. 4885

Gene Structure 1383 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007594.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1236 bp

atgactttgattgctgctactctatctagtaaggttctctcttttgttgttggaagtaatactttaagagaactttggtgtttgctcaaagagaggtatgcctcttcttattggtttaacaaagagcaactaaagaacaacttttacaaacttcaaaaaggttcagattctattgacaactacctggatcaagtgaagatagcttgtgatcagttggctaatgtagggattcatatgacggatgaagacataattgtcttagttcttcttggtttgccatcaaactatactaccatgaagactataatgagggctaagcataaccccatttcaatacaagagttaaggtctcttttgctcattgatgaagctgaacttgaagaaactgacaagtctatttttgctcctgcaagtcttcctttgtcaccattggctgctatggttgcacaaaataatcttgtcaactcatctcagaaaatgcaatatgggatatcaaatgcaggaacaccatctaatgcattctttccgtctccatatattggtaattgttttgtgtcatctacttcacatattgctgcacctaatattggtttgatgcctggtgttgccaataatgctatgattcctaatatgcatgatttcattcattataatatctcactagccacttctactgtgaatcactacaatgctccatcacctagctttactacacactttgggttaccacagaacagtctacaatcacaagtatacaatcctgcatatggtgatagttattttcagcaaaatggaggcatttcacaacagcaaagtggtggtggtcttcagcaaaacaatggtcttcaacctattggtaacctatcatgcaatggatctaaatctcaaggtcaggctctgcataatgtcaattttagtaaaggttactcaaaatcaaaaggtggtgtgtcacaacacaatgtgagttcttatcacaagtcaagaaactctaactccgttgatgaattttatatgaatattccaccaattcatgttccccctgaagaagaacctattgcacatgtgaatacttttgttgatactgctgaaaagaagatggataatacagatagaaaacagtctctcaatactgataaatggatagagagtcataatgcgaaggagacagagaatacaaatgtacttgtgactgataacatagatgtggtagctagagtatcctgtgttgatgcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_2 Retrotran_gag_2

Protein Analysis

411

Amino Acids

45.16

Weight (kDa)

5.99

Isoelectric Point (pI)

58.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001340)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g05651 FvH4_5g06481
malus_domestica	MD04G1150100.v1.1
rosa_chinensis	RchiOBHm_Chr1g0366871 RchiOBHm_Chr2g0112811 RchiOBHm_Chr5g0022021 RchiOBHm_Chr5g0050161 RchiOBHm_Chr7g0178931
rosa_laevigata	RLG00000030270 RLG00000030274 RLG00000030285 RLG00000030289
rosa_multiflora	Rmu_sc0000206.1_g000011 Rmu_sc0000539.1_g000041 Rmu_sc0001706.1_g000020 Rmu_sc0002245.1_g000029 Rmu_sc0002935.1_g000016 Rmu_sc0002952.1_g000016 Rmu_sc0002952.1_g000017 Rmu_sc0003371.1_g000005 Rmu_sc0004193.1_g000005 Rmu_sc0004359.1_g000018 Rmu_sc0006422.1_g000014 Rmu_sc0007594.1_g000001 Rmu_sc0010925.1_g000018 Rmu_sc0013146.1_g000003 Rmu_sc0031630.1_g000002 Rmu_sc0033466.1_g000001 Rmu_ssc0000079.1_g000006 Rmu_ssc0000423.1_g000006
rosa_roxburghii	Rroxscaffold_1G00004520 Rroxscaffold_1G00005520 Rroxscaffold_1G00041540 Rroxscaffold_1G00045310 Rroxscaffold_5G00361650 Rroxscaffold_6G00388920 Rroxscaffold_6G00405980 Rroxscaffold_6G00410140 Rroxscaffold_6G00423840 Rroxscaffold_7G00200050
rosa_rugosa	Rorug02G0433500 Rorug02G0433600 Rorug02G0433600 Rorug02G0433700 Rorug04G0166100.1 Rorug05G0053500 Rorug06G0481300
rosa_samantha	Rh1CG036200 Rh4AG051700 Rh4BG049000 Rh4CG055700
rosa_wichuraiana	Rw0G022690 Rw1G035930 Rw4G004120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	651
AasI	GACNNNNNNGTC	1 cut(s)	254
AccB7I	CCANNNNNTGG	1 cut(s)	539
AccI	GTMKAC	2 cut(s)	739, 753
AclWI	GGATC	2 cut(s)	195, 883
AcsI	RAATTY	1 cut(s)	1004
AcuI	CTGAAG	2 cut(s)	812, 1062
AdeI	CACNNNGTG	1 cut(s)	961
AfaI	GTAC	1 cut(s)	1182
AfiI	CCNNNNNNNGG	3 cut(s)	539, 587, 767
AflIII	ACRYGT	1 cut(s)	1060
AgsI	TTSAA	4 cut(s)	155, 333, 380, 848
AjnI	CCWGG	2 cut(s)	183, 598
AluBI	AGCT	4 cut(s)	203, 371, 705, 1211
AluI	AGCT	4 cut(s)	203, 371, 705, 1211
Alw26I	GTCTC	4 cut(s)	354, 534, 1125, 1157
AlwI	GGATC	2 cut(s)	195, 883
AlwNI	CAGNNNCTG	1 cut(s)	898
ApeKI	GCWGC	3 cut(s)	14, 434, 575
ApoI	RAATTY	1 cut(s)	1004
ArsI	GACNNNNNNTTYG	2 cut(s)	826, 858
AsuHPI	GGTGA	3 cut(s)	417, 690, 782
BbsI	GAAGAC	5 cut(s)	252, 305, 407, 818, 836
BbvI	GCAGC	2 cut(s)	421, 562
BccI	CCATC	4 cut(s)	286, 517, 703, 1090
BciT130I	CCWGG	2 cut(s)	185, 600
BciVI	GTATCC	1 cut(s)	1228
BclI	TGATCA	1 cut(s)	208
BcoDI	GTCTC	4 cut(s)	354, 534, 1125, 1157
BfaI	CTAG	4 cut(s)	27, 662, 702, 1212
BfuI	GTATCC	1 cut(s)	1228
BisI	GCNGC	3 cut(s)	15, 435, 576
BlpI	GCTNAGC	1 cut(s)	315
BlsI	GCNGC	3 cut(s)	16, 436, 577
Bme1390I	CCNGG	2 cut(s)	185, 600
BmrFI	CCNGG	2 cut(s)	185, 600
BmsI	GCATC	2 cut(s)	585, 1219
BpiI	GAAGAC	5 cut(s)	252, 305, 407, 818, 836
Bpu1102I	GCTNAGC	1 cut(s)	315
BpuEI	CTTGAG	1 cut(s)	870
BsaBI	GATNNNNATC	1 cut(s)	880
BsaI	GGTCTC	1 cut(s)	354
BsaXI	ACNNNNNCTCC	2 cut(s)	977, 1007
Bsc4I	CCNNNNNNNGG	3 cut(s)	539, 587, 767
Bse3DI	GCAATG	1 cut(s)	877
Bse8I	GATNNNNATC	1 cut(s)	880
BseBI	CCWGG	2 cut(s)	185, 600
BseGI	GGATG	1 cut(s)	247
BseJI	GATNNNNATC	1 cut(s)	880
BseLI	CCNNNNNNNGG	3 cut(s)	539, 587, 767
BseMI	GCAATG	1 cut(s)	877
BseMII	CTCAG	1 cut(s)	485
BseXI	GCAGC	2 cut(s)	421, 562
BsgI	GTGCAG	1 cut(s)	561
BslI	CCNNNNNNNGG	3 cut(s)	539, 587, 767
BsmAI	GTCTC	4 cut(s)	354, 534, 1125, 1157
BsmBI	CGTCTC	1 cut(s)	534
BsmI	GAATGC	1 cut(s)	518
Bso31I	GGTCTC	1 cut(s)	354
Bsp143I	GATC	3 cut(s)	187, 208, 875
Bsp1720I	GCTNAGC	1 cut(s)	315
BspCNI	CTCAG	1 cut(s)	484
BspPI	GGATC	2 cut(s)	195, 883
BspTNI	GGTCTC	1 cut(s)	354
BsrDI	GCAATG	1 cut(s)	877
BssMI	GATC	3 cut(s)	187, 208, 875
BssNAI	GTATAC	1 cut(s)	754
Bst1107I	GTATAC	1 cut(s)	754
Bst2UI	CCWGG	2 cut(s)	185, 600
Bst4CI	ACNGT	3 cut(s)	676, 737, 1119
Bst6I	CTCTTC	1 cut(s)	109
BstDEI	CTNAG	3 cut(s)	259, 315, 471
BstEII	GGTNACC	2 cut(s)	723, 857
BstF5I	GGATG	1 cut(s)	247
BstKTI	GATC	3 cut(s)	190, 211, 878
BstMAI	GTCTC	4 cut(s)	354, 534, 1125, 1157
BstMBI	GATC	3 cut(s)	187, 208, 875
BstMWI	GCNNNNNNNGC	2 cut(s)	443, 614
BstNI	CCWGG	2 cut(s)	185, 600
BstNSI	RCATGY	1 cut(s)	1064
BstPI	GGTNACC	2 cut(s)	723, 857
BstSCI	CCNGG	2 cut(s)	183, 598
BstV1I	GCAGC	2 cut(s)	421, 562
BstV2I	GAAGAC	5 cut(s)	252, 305, 407, 818, 836
BstX2I	RGATCY	1 cut(s)	875
BstYI	RGATCY	1 cut(s)	875
BstZ17I	GTATAC	1 cut(s)	754
BsuI	GTATCC	1 cut(s)	1228
BtsCI	GGATG	1 cut(s)	247
CaiI	CAGNNNCTG	1 cut(s)	898
Csp6I	GTAC	1 cut(s)	1181
CviAII	CATG	5 cut(s)	295, 635, 867, 1031, 1061
CviJI	RGCY	9 cut(s)	203, 218, 314, 371, 434, 665, 705, 896, 1211
CviKI_1	RGCY	9 cut(s)	203, 218, 314, 371, 434, 665, 705, 896, 1211
CviQI	GTAC	1 cut(s)	1181
DdeI	CTNAG	3 cut(s)	259, 315, 471
DpnI	GATC	3 cut(s)	189, 210, 877
DpnII	GATC	3 cut(s)	187, 208, 875
DraIII	CACNNNGTG	1 cut(s)	961
DrdI	GACNNNNNNGTC	1 cut(s)	254
DseDI	GACNNNNNNGTC	1 cut(s)	254
Eam1104I	CTCTTC	1 cut(s)	109
EarI	CTCTTC	1 cut(s)	109
Eco31I	GGTCTC	1 cut(s)	354
Eco32I	GATATC	1 cut(s)	492
Eco57I	CTGAAG	2 cut(s)	812, 1062
Eco91I	GGTNACC	2 cut(s)	723, 857
EcoO65I	GGTNACC	2 cut(s)	723, 857
EcoRII	CCWGG	2 cut(s)	183, 598
EcoRV	GATATC	1 cut(s)	492
EcoT22I	ATGCAT	2 cut(s)	520, 636
Esp3I	CGTCTC	1 cut(s)	534
FaeI	CATG	5 cut(s)	298, 638, 870, 1034, 1064
FalI	AAGNNNNNCTT	8 cut(s)	46, 78, 125, 157, 360, 392, 403, 435
FatI	CATG	5 cut(s)	294, 634, 866, 1030, 1060
FauNDI	CATATG	2 cut(s)	234, 766
FbaI	TGATCA	1 cut(s)	208
FblI	GTMKAC	2 cut(s)	739, 753
Fnu4HI	GCNGC	3 cut(s)	15, 435, 576
FokI	GGATG	1 cut(s)	254
Fsp4HI	GCNGC	3 cut(s)	15, 435, 576
FspBI	CTAG	4 cut(s)	27, 662, 702, 1212
GluI	GCNGC	3 cut(s)	15, 435, 576
Hin1II	CATG	5 cut(s)	298, 638, 870, 1034, 1064
HincII	GTYRAC	1 cut(s)	463
HindII	GTYRAC	1 cut(s)	463
HinfI	GANTC	5 cut(s)	167, 229, 622, 679, 1147
HphI	GGTGA	3 cut(s)	417, 690, 782
Hpy166II	GTNNAC	3 cut(s)	463, 740, 754
Hpy188I	TCNGA	2 cut(s)	166, 474
Hpy188III	TCNNGA	1 cut(s)	981
Hpy8I	GTNNAC	3 cut(s)	463, 740, 754
HpyAV	CCTTC	1 cut(s)	1153
HpyCH4III	ACNGT	3 cut(s)	676, 737, 1119
HpyF10VI	GCNNNNNNNGC	2 cut(s)	443, 614
HpyF3I	CTNAG	3 cut(s)	259, 315, 471
Hsp92II	CATG	5 cut(s)	298, 638, 870, 1034, 1064
Ksp22I	TGATCA	1 cut(s)	208
Kzo9I	GATC	3 cut(s)	187, 208, 875
LmnI	GCTCC	2 cut(s)	409, 697
LpnPI	CCDG	9 cut(s)	170, 197, 420, 486, 585, 612, 774, 878, 1053
Lsp1109I	GCAGC	2 cut(s)	421, 562
LweI	GCATC	2 cut(s)	585, 1219
MaeI	CTAG	4 cut(s)	27, 662, 702, 1212
MaeIII	GTNAC	6 cut(s)	423, 723, 857, 923, 948, 1186
MalI	GATC	3 cut(s)	189, 210, 877
MboI	GATC	3 cut(s)	187, 208, 875
MflI	RGATCY	1 cut(s)	875
MluCI	AATT	5 cut(s)	252, 544, 910, 1004, 1026
MlyI	GAGTC	1 cut(s)	1156
MmeI	TCCRAC	1 cut(s)	31
MnlI	CCTC	4 cut(s)	87, 112, 303, 788
Mph1103I	ATGCAT	2 cut(s)	520, 636
MseI	TTAA	3 cut(s)	65, 117, 344
MslI	CAYNNNNRTG	2 cut(s)	687, 1202
MspR9I	CCNGG	2 cut(s)	185, 600
Mva1269I	GAATGC	1 cut(s)	518
MvaI	CCWGG	2 cut(s)	185, 600
MwoI	GCNNNNNNNGC	2 cut(s)	443, 614
NdeI	CATATG	2 cut(s)	234, 766
NdeII	GATC	3 cut(s)	187, 208, 875
NlaIII	CATG	5 cut(s)	298, 638, 870, 1034, 1064
NmuCI	GTSAC	3 cut(s)	423, 948, 1186
NsiI	ATGCAT	2 cut(s)	520, 636
NspI	RCATGY	1 cut(s)	1064
PciI	ACATGT	1 cut(s)	1060
PctI	GAATGC	1 cut(s)	518
PfeI	GAWTC	4 cut(s)	167, 229, 622, 679
PflMI	CCANNNNNTGG	1 cut(s)	539
PkrI	GCNGC	3 cut(s)	16, 436, 577
PleI	GAGTC	1 cut(s)	1155
PpsI	GAGTC	1 cut(s)	1155
PscI	ACATGT	1 cut(s)	1060
PsiI	TTATAA	1 cut(s)	651
Psp6I	CCWGG	2 cut(s)	183, 598
PspEI	GGTNACC	2 cut(s)	723, 857
PspGI	CCWGG	2 cut(s)	183, 598
PsrI	GAACNNNNNNTAC	2 cut(s)	128, 160
PstNI	CAGNNNCTG	1 cut(s)	898
PsuI	RGATCY	1 cut(s)	875
RsaI	GTAC	1 cut(s)	1182
RsaNI	GTAC	1 cut(s)	1181
RseI	CAYNNNNRTG	2 cut(s)	687, 1202
SaqAI	TTAA	3 cut(s)	65, 117, 344
SatI	GCNGC	3 cut(s)	15, 435, 576
Sau3AI	GATC	3 cut(s)	187, 208, 875
SchI	GAGTC	1 cut(s)	1156
ScrFI	CCNGG	2 cut(s)	185, 600
SfaNI	GCATC	2 cut(s)	585, 1219
SmiMI	CAYNNNNRTG	2 cut(s)	687, 1202
SmlI	CTYRAG	1 cut(s)	885
SmoI	CTYRAG	1 cut(s)	885
Sse9I	AATT	5 cut(s)	252, 544, 910, 1004, 1026
SspI	AATATT	2 cut(s)	586, 1018
SspMI	CTAG	4 cut(s)	27, 662, 702, 1212
StyD4I	CCNGG	2 cut(s)	183, 598
TaaI	ACNGT	3 cut(s)	676, 737, 1119
TasI	AATT	5 cut(s)	252, 544, 910, 1004, 1026
TatI	WGTACW	1 cut(s)	1180
TfiI	GAWTC	4 cut(s)	167, 229, 622, 679
Tru1I	TTAA	3 cut(s)	65, 117, 344
Tru9I	TTAA	3 cut(s)	65, 117, 344
TseFI	GTSAC	3 cut(s)	423, 948, 1186
TseI	GCWGC	3 cut(s)	14, 434, 575
Tsp45I	GTSAC	3 cut(s)	423, 948, 1186
TspDTI	ATGAA	9 cut(s)	221, 258, 311, 381, 631, 635, 1017, 1019, 1028
TspGWI	ACGGA	3 cut(s)	254, 516, 985
Van91I	CCANNNNNTGG	1 cut(s)	539
XapI	RAATTY	1 cut(s)	1004
XceI	RCATGY	1 cut(s)	1064
XmiI	GTMKAC	2 cut(s)	739, 753
XspI	CTAG	4 cut(s)	27, 662, 702, 1212
Zsp2I	ATGCAT	2 cut(s)	520, 636

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.