Rroxscaffold_1G00005520

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Reverse (-)
7487862 .. 7488378
517 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00005520.1

Sequence Viewer

Length: 423 bp
ATGCAAGAGTTAAGGTCTCTTTTGCTCATTGATGAAGCTGAACTTGAAGAGGTTGACAAGTCTATTTCCTTACCTTCCAAGATCGAAATCATAGCACAAGGTGATAATGTCGAGGGTCTACGCATGCGCCAACTCATGTACATGAATGCTCCTTATGTCACCGCATCTGTTCCTATGCTGCTACATATGCTGCAAATACGTTCTACGAATAAGAACTCCATAATGCAACCTTTGCCAACCCATGATCCGGTATTCAATCAATGGTATGTTCAACCACAAGGAAATTCTGGATATGCTTACAATATTGGTGAAAATCAATACAATGAAGCATTCAATTCTAGTGCTACCGAGCAAAATGAAGGTCTCATGCAACAAGATGGTTGCTCACATAAAAGTGAAGGTCTCTCACAAAAGGCTACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

140

Amino Acids

15.78

Weight (kDa)

4.72

Isoelectric Point (pI)

55.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 118
AciI CCGC 1 cut(s) 162
AclWI GGATC 1 cut(s) 239
AcsI RAATTY 1 cut(s) 283
AdeI CACNNNGTG 1 cut(s) 101
AfaI GTAC 1 cut(s) 140
AfiI CCNNNNNNNGG 1 cut(s) 247
AgsI TTSAA 4 cut(s) 47, 256, 272, 334
AluBI AGCT 1 cut(s) 38
AluI AGCT 1 cut(s) 38
Alw26I GTCTC 3 cut(s) 21, 368, 407
AlwI GGATC 1 cut(s) 239
ApeKI GCWGC 2 cut(s) 178, 190
ApoI RAATTY 1 cut(s) 283
ArsI GACNNNNNNTTYG 2 cut(s) 346, 378
AspLEI GCGC 1 cut(s) 129
AsuHPI GGTGA 3 cut(s) 113, 151, 320
BbvI GCAGC 2 cut(s) 165, 177
BccI CCATC 1 cut(s) 371
BcoDI GTCTC 3 cut(s) 21, 368, 407
BfaI CTAG 1 cut(s) 339
BisI GCNGC 2 cut(s) 179, 191
BlsI GCNGC 2 cut(s) 180, 192
BmsI GCATC 1 cut(s) 173
BsaBI GATNNNNATC 1 cut(s) 86
BsaI GGTCTC 3 cut(s) 21, 368, 407
BsaWI WCCGGW 1 cut(s) 247
Bsc4I CCNNNNNNNGG 1 cut(s) 247
Bse8I GATNNNNATC 1 cut(s) 86
BseJI GATNNNNATC 1 cut(s) 86
BseLI CCNNNNNNNGG 1 cut(s) 247
BseXI GCAGC 2 cut(s) 165, 177
BsiSI CCGG 1 cut(s) 248
BslI CCNNNNNNNGG 1 cut(s) 247
BsmAI GTCTC 3 cut(s) 21, 368, 407
BsmI GAATGC 2 cut(s) 151, 329
Bso31I GGTCTC 3 cut(s) 21, 368, 407
Bsp1407I TGTACA 1 cut(s) 138
Bsp143I GATC 2 cut(s) 81, 244
BspACI CCGC 1 cut(s) 162
BspPI GGATC 1 cut(s) 239
BspTNI GGTCTC 3 cut(s) 21, 368, 407
BsrGI TGTACA 1 cut(s) 138
BssMI GATC 2 cut(s) 81, 244
Bst6I CTCTTC 1 cut(s) 42
BstAPI GCANNNNNTGC 1 cut(s) 232
BstAUI TGTACA 1 cut(s) 138
BstC8I GCNNGC 1 cut(s) 125
BstHHI GCGC 1 cut(s) 129
BstKTI GATC 2 cut(s) 84, 247
BstMAI GTCTC 3 cut(s) 21, 368, 407
BstMBI GATC 2 cut(s) 81, 244
BstMWI GCNNNNNNNGC 2 cut(s) 187, 232
BstNSI RCATGY 1 cut(s) 127
BstV1I GCAGC 2 cut(s) 165, 177
Cac8I GCNNGC 1 cut(s) 125
CfoI GCGC 1 cut(s) 129
Csp6I GTAC 1 cut(s) 139
CviAII CATG 5 cut(s) 124, 136, 142, 242, 367
CviJI RGCY 2 cut(s) 38, 416
CviKI_1 RGCY 2 cut(s) 38, 416
CviQI GTAC 1 cut(s) 139
DpnI GATC 2 cut(s) 83, 246
DpnII GATC 2 cut(s) 81, 244
DraIII CACNNNGTG 1 cut(s) 101
Eam1104I CTCTTC 1 cut(s) 42
EarI CTCTTC 1 cut(s) 42
Eco31I GGTCTC 3 cut(s) 21, 368, 407
FaeI CATG 5 cut(s) 127, 139, 145, 245, 370
FalI AAGNNNNNCTT 2 cut(s) 27, 59
FatI CATG 5 cut(s) 123, 135, 141, 241, 366
FauNDI CATATG 1 cut(s) 186
FblI GTMKAC 1 cut(s) 118
Fnu4HI GCNGC 2 cut(s) 179, 191
Fsp4HI GCNGC 2 cut(s) 179, 191
FspBI CTAG 1 cut(s) 339
GlaI GCGC 1 cut(s) 128
GluI GCNGC 2 cut(s) 179, 191
HapII CCGG 1 cut(s) 248
HhaI GCGC 1 cut(s) 129
Hin1II CATG 5 cut(s) 127, 139, 145, 245, 370
Hin6I GCGC 1 cut(s) 127
HinP1I GCGC 1 cut(s) 127
HincII GTYRAC 1 cut(s) 55
HindII GTYRAC 1 cut(s) 55
HpaII CCGG 1 cut(s) 248
HphI GGTGA 3 cut(s) 113, 151, 320
Hpy166II GTNNAC 2 cut(s) 55, 119
Hpy188III TCNNGA 1 cut(s) 288
Hpy8I GTNNAC 2 cut(s) 55, 119
HpyAV CCTTC 3 cut(s) 84, 353, 392
HpyCH4IV ACGT 1 cut(s) 199
HpyCH4V TGCA 4 cut(s) 4, 193, 226, 370
HpyF10VI GCNNNNNNNGC 2 cut(s) 187, 232
HpySE526I ACGT 1 cut(s) 199
Hsp92II CATG 5 cut(s) 127, 139, 145, 245, 370
HspAI GCGC 1 cut(s) 127
Kzo9I GATC 2 cut(s) 81, 244
LmnI GCTCC 1 cut(s) 154
LpnPI CCDG 2 cut(s) 261, 273
Lsp1109I GCAGC 2 cut(s) 165, 177
LweI GCATC 1 cut(s) 173
MaeI CTAG 1 cut(s) 339
MaeII ACGT 1 cut(s) 199
MaeIII GTNAC 1 cut(s) 157
MalI GATC 2 cut(s) 83, 246
MboI GATC 2 cut(s) 81, 244
MboII GAAGA 1 cut(s) 59
MluCI AATT 2 cut(s) 283, 334
MnlI CCTC 2 cut(s) 43, 106
MseI TTAA 2 cut(s) 11, 421
MslI CAYNNNNRTG 2 cut(s) 140, 393
MspI CCGG 1 cut(s) 248
Mva1269I GAATGC 2 cut(s) 151, 329
MwoI GCNNNNNNNGC 2 cut(s) 187, 232
NdeI CATATG 1 cut(s) 186
NdeII GATC 2 cut(s) 81, 244
NlaIII CATG 5 cut(s) 127, 139, 145, 245, 370
NmuCI GTSAC 1 cut(s) 157
NspI RCATGY 1 cut(s) 127
PaeI GCATGC 1 cut(s) 127
PctI GAATGC 2 cut(s) 151, 329
PkrI GCNGC 2 cut(s) 180, 192
RsaI GTAC 1 cut(s) 140
RsaNI GTAC 1 cut(s) 139
RseI CAYNNNNRTG 2 cut(s) 140, 393
SaqAI TTAA 2 cut(s) 11, 421
SatI GCNGC 2 cut(s) 179, 191
Sau3AI GATC 2 cut(s) 81, 244
SetI ASST 9 cut(s) 17, 40, 54, 76, 103, 202, 232, 364, 403
SfaNI GCATC 1 cut(s) 173
SmiMI CAYNNNNRTG 2 cut(s) 140, 393
SphI GCATGC 1 cut(s) 127
Sse9I AATT 2 cut(s) 283, 334
SsiI CCGC 1 cut(s) 162
SspI AATATT 1 cut(s) 304
SspMI CTAG 1 cut(s) 339
TaiI ACGT 1 cut(s) 202
TaqI TCGA 2 cut(s) 84, 111
TasI AATT 2 cut(s) 283, 334
TatI WGTACW 1 cut(s) 138
Tru1I TTAA 2 cut(s) 11, 421
Tru9I TTAA 2 cut(s) 11, 421
TseFI GTSAC 1 cut(s) 157
TseI GCWGC 2 cut(s) 178, 190
Tsp45I GTSAC 1 cut(s) 157
TspDTI ATGAA 4 cut(s) 48, 158, 339, 372
XapI RAATTY 1 cut(s) 283
XceI RCATGY 1 cut(s) 127
XmiI GTMKAC 1 cut(s) 118
XspI CTAG 1 cut(s) 339
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.