Rw4G004120
NAC Family

Chromatin structure-remodeling complex protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0001340
Physical Location & Seq
Reverse (-)
8137308 .. 8139505
2198 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G004120.1

Sequence Viewer

Length: 825 bp
ATGTCCGATTCCGGCTCCGATCTCCCATTAGGGTCTTCTCAGGCTGCTGGAGTTGCAAAAGATTCCAATTCGGGCTTGGCCGAAACTGAGGTGTCTAAGATGGACCCATTTGCTTCAAGTAGACCACCTGCTGGACCTATCCGTACAGGGCATGACCATTATCAAGGATCTGCAACTCATCGAAGTAGTCAATCTTTTGATCATGAAACTCCATCTAGTTTAGACTCTAGATCTGCCAATTCACAGTCCCAAGAAAGAAAGCCTCTAGAGGAGGTGGAATGTAAGGTTAAAGTTGGTAATACTTCTCAAGTTAATGGGTCATTTCCGGCAAATGTGTCTGAAAACCTTGATTTCCGTCCCTCTTCTGAAGCTAAAGTTGGATCTCTTCTGAAAGCTAAAGCTGGTGATGTCTCTGACGTTTGTGAGACATTGACAGAAGTTGTACCTGAAAACATGGATTTGCTGCCATCTTCAACAGGGCAGAAGTCGGAATCAGAAGCTATATTTGGAGTTGCTTCTCAGGTGCGTGAGACAGTGTCAAAAATTGTATCTGAAAACATAGAGTTGCGGCTATCTTCAACAGTGCAGGAGTTGGAATCTGAAGAAGTTGATAGGTCTCAGGTTTGTGAGACACTGTTGGAATTTGTACCTGAGAACATGGATTTGCAGCCATCTTCAACAGTGCAGGAGTCGAAATCTGAAACTAGAGGTGGTGAGGCTTCTCAGGTTAGCAAAATATTGTCGGAGTCTGAAAACATGGATTTGCAGACATTGGCAACAACATGTGACTCAGTATCTGCAGCTAAAGCTGGTGAGGTGTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000166 GO:0000228 GO:0000785 GO:0000790 GO:0000988 GO:0000990 GO:0000991 GO:0002831 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005829 GO:0006139 GO:0006325 GO:0006338 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0006950 GO:0006996 GO:0007275 GO:0008026 GO:0008094 GO:0008144 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009611 GO:0009653 GO:0009791 GO:0009889 GO:0009908 GO:0009966 GO:0009987 GO:0010104 GO:0010199 GO:0010467 GO:0010468 GO:0010556 GO:0010646 GO:0010959 GO:0016043 GO:0016070 GO:0016462 GO:0016514 GO:0016586 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017076 GO:0017111 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022414 GO:0023051 GO:0030554 GO:0031323 GO:0031326 GO:0031347 GO:0031974 GO:0031981 GO:0032101 GO:0032392 GO:0032501 GO:0032502 GO:0032508 GO:0032553 GO:0032555 GO:0032559 GO:0032774 GO:0032879 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0034756 GO:0035639 GO:0036094 GO:0040029 GO:0042623 GO:0043044 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043269 GO:0043900 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0048367 GO:0048583 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0048859 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051171 GO:0051252 GO:0051276 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0070035 GO:0070297 GO:0070603 GO:0071103 GO:0071704 GO:0071840 GO:0080090 GO:0080134 GO:0090304 GO:0090567 GO:0090691 GO:0097159 GO:0097367 GO:0097659 GO:0140097 GO:0140110 GO:1900150 GO:1900390 GO:1900393 GO:1900400 GO:1901265 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902494 GO:1902531 GO:1903506 GO:1904949 GO:2000022 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04714 ko05225 map04714 map05225
Pfam Domains
Protein Families
Helicase_C SNF2_N SnAC

Protein Analysis

274

Amino Acids

29.06

Weight (kDa)

4.5

Isoelectric Point (pI)

67.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 136
Acc36I ACCTGC 1 cut(s) 136
AccB7I CCANNNNNTGG 1 cut(s) 131
AccI GTMKAC 1 cut(s) 121
AciI CCGC 1 cut(s) 568
AclWI GGATC 2 cut(s) 175, 388
AcoI YGGCCR 1 cut(s) 78
AcsI RAATTY 1 cut(s) 641
AcuI CTGAAG 2 cut(s) 387, 621
AfaI GTAC 3 cut(s) 145, 444, 648
AfiI CCNNNNNNNGG 1 cut(s) 131
AflIII ACRYGT 1 cut(s) 782
AgsI TTSAA 4 cut(s) 117, 474, 579, 678
AjuI GAANNNNNNNTTGG 4 cut(s) 360, 392, 489, 521
AluBI AGCT 6 cut(s) 371, 395, 401, 500, 803, 809
AluI AGCT 6 cut(s) 371, 395, 401, 500, 803, 809
Alw26I GTCTC 5 cut(s) 415, 419, 524, 621, 623
AlwI GGATC 2 cut(s) 175, 388
AlwNI CAGNNNCTG 1 cut(s) 797
AoxI GGCC 1 cut(s) 78
ApeKI GCWGC 4 cut(s) 44, 463, 667, 800
ApoI RAATTY 1 cut(s) 641
AspS9I GGNCC 2 cut(s) 103, 134
AsuHPI GGTGA 3 cut(s) 416, 725, 824
AvaII GGWCC 2 cut(s) 103, 134
BbsI GAAGAC 1 cut(s) 27
BbvI GCAGC 4 cut(s) 31, 450, 679, 812
BccI CCATC 4 cut(s) 94, 220, 475, 679
BclI TGATCA 1 cut(s) 199
BcoDI GTCTC 5 cut(s) 415, 419, 524, 621, 623
BfaI CTAG 4 cut(s) 216, 228, 266, 705
BfmI CTRYAG 1 cut(s) 798
BfuAI ACCTGC 1 cut(s) 136
BglII AGATCT 1 cut(s) 230
BisI GCNGC 5 cut(s) 45, 464, 569, 668, 801
BlsI GCNGC 5 cut(s) 46, 465, 570, 669, 802
Bme18I GGWCC 2 cut(s) 103, 134
BmgT120I GGNCC 2 cut(s) 103, 134
BmiI GGNNCC 2 cut(s) 16, 105
BpiI GAAGAC 1 cut(s) 27
BpmI CTGGAG 1 cut(s) 69
BpuEI CTTGAG 1 cut(s) 291
BsaI GGTCTC 1 cut(s) 621
Bsc4I CCNNNNNNNGG 1 cut(s) 131
BseLI CCNNNNNNNGG 1 cut(s) 131
BseMII CTCAG 7 cut(s) 53, 78, 533, 632, 642, 737, 804
BseRI GAGGAG 1 cut(s) 284
BseXI GCAGC 4 cut(s) 31, 450, 679, 812
BsgI GTGCAG 2 cut(s) 605, 704
BshFI GGCC 1 cut(s) 80
BsiSI CCGG 2 cut(s) 12, 326
BslFI GGGAC 2 cut(s) 232, 342
BslI CCNNNNNNNGG 1 cut(s) 131
BsmAI GTCTC 5 cut(s) 415, 419, 524, 621, 623
BsmFI GGGAC 2 cut(s) 232, 342
BsnI GGCC 1 cut(s) 80
Bso31I GGTCTC 1 cut(s) 621
Bsp143I GATC 5 cut(s) 19, 167, 199, 230, 380
BspACI CCGC 1 cut(s) 568
BspANI GGCC 1 cut(s) 80
BspCNI CTCAG 7 cut(s) 52, 79, 532, 631, 643, 736, 803
BspHI TCATGA 1 cut(s) 202
BspLI GGNNCC 2 cut(s) 16, 105
BspMAI CTGCAG 1 cut(s) 802
BspMI ACCTGC 1 cut(s) 136
BspPI GGATC 2 cut(s) 175, 388
BspTNI GGTCTC 1 cut(s) 621
BssMI GATC 5 cut(s) 19, 167, 199, 230, 380
Bst4CI ACNGT 5 cut(s) 246, 535, 583, 636, 682
Bst6I CTCTTC 2 cut(s) 367, 390
BstDEI CTNAG 9 cut(s) 39, 87, 96, 519, 618, 651, 723, 790, 822
BstKTI GATC 5 cut(s) 22, 170, 202, 233, 383
BstMAI GTCTC 5 cut(s) 415, 419, 524, 621, 623
BstMBI GATC 5 cut(s) 19, 167, 199, 230, 380
BstMWI GCNNNNNNNGC 2 cut(s) 53, 806
BstNSI RCATGY 1 cut(s) 786
BstSFI CTRYAG 1 cut(s) 798
BstV1I GCAGC 4 cut(s) 31, 450, 679, 812
BstV2I GAAGAC 1 cut(s) 27
BstX2I RGATCY 3 cut(s) 167, 230, 380
BstYI RGATCY 3 cut(s) 167, 230, 380
BsuRI GGCC 1 cut(s) 80
BtsIMutI CAGTG 4 cut(s) 540, 588, 632, 687
BveI ACCTGC 1 cut(s) 136
CaiI CAGNNNCTG 1 cut(s) 797
CciI TCATGA 1 cut(s) 202
Cfr13I GGNCC 2 cut(s) 103, 134
Csp6I GTAC 3 cut(s) 144, 443, 647
CviAII CATG 6 cut(s) 152, 203, 454, 658, 757, 783
CviQI GTAC 3 cut(s) 144, 443, 647
DdeI CTNAG 9 cut(s) 39, 87, 96, 519, 618, 651, 723, 790, 822
DpnI GATC 5 cut(s) 21, 169, 201, 232, 382
DpnII GATC 5 cut(s) 19, 167, 199, 230, 380
EaeI YGGCCR 1 cut(s) 78
Eam1104I CTCTTC 2 cut(s) 367, 390
EarI CTCTTC 2 cut(s) 367, 390
Eco31I GGTCTC 1 cut(s) 621
Eco47I GGWCC 2 cut(s) 103, 134
Eco57I CTGAAG 2 cut(s) 387, 621
FaeI CATG 6 cut(s) 155, 206, 457, 661, 760, 786
FaiI YATR 8 cut(s) 153, 204, 455, 503, 560, 659, 758, 784
FaqI GGGAC 2 cut(s) 232, 342
FatI CATG 6 cut(s) 151, 202, 453, 657, 756, 782
FbaI TGATCA 1 cut(s) 199
FblI GTMKAC 1 cut(s) 121
Fnu4HI GCNGC 5 cut(s) 45, 464, 569, 668, 801
Fsp4HI GCNGC 5 cut(s) 45, 464, 569, 668, 801
FspBI CTAG 4 cut(s) 216, 228, 266, 705
GluI GCNGC 5 cut(s) 45, 464, 569, 668, 801
GsuI CTGGAG 1 cut(s) 69
HaeIII GGCC 1 cut(s) 80
HapII CCGG 2 cut(s) 12, 326
Hin1II CATG 6 cut(s) 155, 206, 457, 661, 760, 786
HinfI GANTC 8 cut(s) 8, 62, 224, 491, 596, 689, 746, 788
HpaII CCGG 2 cut(s) 12, 326
HphI GGTGA 3 cut(s) 416, 725, 824
Hpy166II GTNNAC 1 cut(s) 122
Hpy188III TCNNGA 3 cut(s) 203, 228, 266
Hpy8I GTNNAC 1 cut(s) 122
HpyCH4III ACNGT 5 cut(s) 246, 535, 583, 636, 682
HpyCH4IV ACGT 1 cut(s) 417
HpyCH4V TGCA 7 cut(s) 56, 173, 586, 667, 685, 766, 800
HpyF10VI GCNNNNNNNGC 2 cut(s) 53, 806
HpyF3I CTNAG 9 cut(s) 39, 87, 96, 519, 618, 651, 723, 790, 822
HpySE526I ACGT 1 cut(s) 417
Hsp92II CATG 6 cut(s) 155, 206, 457, 661, 760, 786
Ksp22I TGATCA 1 cut(s) 199
Kzo9I GATC 5 cut(s) 19, 167, 199, 230, 380
LmnI GCTCC 1 cut(s) 20
Lsp1109I GCAGC 4 cut(s) 31, 450, 679, 812
MaeI CTAG 4 cut(s) 216, 228, 266, 705
MaeII ACGT 1 cut(s) 417
MaeIII GTNAC 1 cut(s) 785
MalI GATC 5 cut(s) 21, 169, 201, 232, 382
MboI GATC 5 cut(s) 19, 167, 199, 230, 380
MboII GAAGA 7 cut(s) 27, 354, 377, 462, 567, 614, 666
MflI RGATCY 3 cut(s) 167, 230, 380
MluCI AATT 4 cut(s) 67, 238, 543, 641
MlyI GAGTC 4 cut(s) 218, 698, 755, 782
MmeI TCCRAC 5 cut(s) 358, 468, 573, 618, 723
MnlI CCTC 8 cut(s) 82, 262, 265, 273, 370, 701, 709, 808
MseI TTAA 2 cut(s) 288, 312
MspI CCGG 2 cut(s) 12, 326
MwoI GCNNNNNNNGC 2 cut(s) 53, 806
NdeII GATC 5 cut(s) 19, 167, 199, 230, 380
NlaIII CATG 6 cut(s) 155, 206, 457, 661, 760, 786
NlaIV GGNNCC 2 cut(s) 16, 105
NmuCI GTSAC 1 cut(s) 785
NspI RCATGY 1 cut(s) 786
PagI TCATGA 1 cut(s) 202
PaqCI CACCTGC 1 cut(s) 136
PciI ACATGT 1 cut(s) 782
PfeI GAWTC 4 cut(s) 8, 62, 491, 596
PflFI GACNNNGTC 1 cut(s) 535
PflMI CCANNNNNTGG 1 cut(s) 131
PkrI GCNGC 5 cut(s) 46, 465, 570, 669, 802
PleI GAGTC 4 cut(s) 218, 697, 754, 782
PpsI GAGTC 4 cut(s) 218, 697, 754, 782
PscI ACATGT 1 cut(s) 782
PspN4I GGNNCC 2 cut(s) 16, 105
PspPI GGNCC 2 cut(s) 103, 134
PstI CTGCAG 1 cut(s) 802
PstNI CAGNNNCTG 1 cut(s) 797
PsuI RGATCY 3 cut(s) 167, 230, 380
PsyI GACNNNGTC 1 cut(s) 535
RsaI GTAC 3 cut(s) 145, 444, 648
RsaNI GTAC 3 cut(s) 144, 443, 647
SaqAI TTAA 2 cut(s) 288, 312
SatI GCNGC 5 cut(s) 45, 464, 569, 668, 801
Sau3AI GATC 5 cut(s) 19, 167, 199, 230, 380
Sau96I GGNCC 2 cut(s) 103, 134
SchI GAGTC 4 cut(s) 218, 698, 755, 782
SfcI CTRYAG 1 cut(s) 798
SinI GGWCC 2 cut(s) 103, 134
SmlI CTYRAG 1 cut(s) 306
SmoI CTYRAG 1 cut(s) 306
Sse9I AATT 4 cut(s) 67, 238, 543, 641
SsiI CCGC 1 cut(s) 568
SspI AATATT 1 cut(s) 738
SspMI CTAG 4 cut(s) 216, 228, 266, 705
TaaI ACNGT 5 cut(s) 246, 535, 583, 636, 682
TaiI ACGT 1 cut(s) 420
TaqI TCGA 2 cut(s) 181, 692
TasI AATT 4 cut(s) 67, 238, 543, 641
TauI GCSGC 1 cut(s) 571
TfiI GAWTC 4 cut(s) 8, 62, 491, 596
Tru1I TTAA 2 cut(s) 288, 312
Tru9I TTAA 2 cut(s) 288, 312
TscAI CASTG 4 cut(s) 540, 588, 639, 687
TseFI GTSAC 1 cut(s) 785
TseI GCWGC 4 cut(s) 44, 463, 667, 800
Tsp45I GTSAC 1 cut(s) 785
TspDTI ATGAA 1 cut(s) 219
TspGWI ACGGA 2 cut(s) 131, 344
TspRI CASTG 4 cut(s) 540, 588, 639, 687
Tth111I GACNNNGTC 1 cut(s) 535
Van91I CCANNNNNTGG 1 cut(s) 131
VpaK11BI GGWCC 2 cut(s) 103, 134
XapI RAATTY 1 cut(s) 641
XbaI TCTAGA 2 cut(s) 227, 265
XceI RCATGY 1 cut(s) 786
XcmI CCANNNNNNNNNTGG 1 cut(s) 73
XmiI GTMKAC 1 cut(s) 121
XspI CTAG 4 cut(s) 216, 228, 266, 705
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.