Rroxscaffold_7G00200050

May act early in the ethylene signal transduction pathway, possibly as an ethylene receptor, or as a regulator of the pathway

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
Physical Location & Seq
Forward (+)
47372982 .. 47377279
4298 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00200050.1

Sequence Viewer

Length: 303 bp
ATGGATTCTACGCTTCAATTACAAATTGATCAGCCAATAATAGACTTGGATAAGGCAGAAAAGAAGGATGAACTTAGAGTAAATGTCATATTGGCTGCTAAGATAGGAAATGAAGATAGTGTGATTAATTCGAGGAAGGGAAAGATGAGCAAAGCTTTCATTCGATTCACTCTTCTTCCGCAATCGGCCTTATCTCTCCCAAGTGATCAAAGCGATGTCATGGAGATGTCGGCAAAAGATAATGGAAGGTTCCCACTGGAGATGAGGCATTTTCAGCTTCGGTGGAGTATTGTTGATCATTGA

Protein Analysis

100

Amino Acids

11.41

Weight (kDa)

6.07

Isoelectric Point (pI)

60.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 179
AgsI TTSAA 1 cut(s) 17
AluBI AGCT 2 cut(s) 155, 277
AluI AGCT 2 cut(s) 155, 277
AoxI GGCC 1 cut(s) 186
ApeKI GCWGC 1 cut(s) 95
AseI ATTAAT 1 cut(s) 126
BbvI GCAGC 1 cut(s) 82
BclI TGATCA 3 cut(s) 28, 205, 295
BisI GCNGC 1 cut(s) 96
BlsI GCNGC 1 cut(s) 97
BmiI GGNNCC 1 cut(s) 251
BpmI CTGGAG 1 cut(s) 278
Bse1I ACTGG 1 cut(s) 261
BseGI GGATG 1 cut(s) 73
BseNI ACTGG 1 cut(s) 261
BseXI GCAGC 1 cut(s) 82
BshFI GGCC 1 cut(s) 188
BsnI GGCC 1 cut(s) 188
Bsp143I GATC 3 cut(s) 28, 205, 295
BspACI CCGC 1 cut(s) 179
BspANI GGCC 1 cut(s) 188
BspLI GGNNCC 1 cut(s) 251
BsrI ACTGG 1 cut(s) 261
BssMI GATC 3 cut(s) 28, 205, 295
Bst6I CTCTTC 1 cut(s) 177
BstDEI CTNAG 2 cut(s) 74, 99
BstF5I GGATG 1 cut(s) 73
BstKTI GATC 3 cut(s) 31, 208, 298
BstMBI GATC 3 cut(s) 28, 205, 295
BstMWI GCNNNNNNNGC 1 cut(s) 274
BstV1I GCAGC 1 cut(s) 82
BsuRI GGCC 1 cut(s) 188
BtgZI GCGATG 1 cut(s) 228
BtsCI GGATG 1 cut(s) 73
BtsIMutI CAGTG 1 cut(s) 254
CviAII CATG 1 cut(s) 220
CviJI RGCY 5 cut(s) 34, 95, 155, 188, 277
CviKI_1 RGCY 5 cut(s) 34, 95, 155, 188, 277
DdeI CTNAG 2 cut(s) 74, 99
DpnI GATC 3 cut(s) 30, 207, 297
DpnII GATC 3 cut(s) 28, 205, 295
Eam1104I CTCTTC 1 cut(s) 177
EarI CTCTTC 1 cut(s) 177
FaeI CATG 1 cut(s) 223
FaiI YATR 2 cut(s) 89, 221
FatI CATG 1 cut(s) 219
FbaI TGATCA 3 cut(s) 28, 205, 295
Fnu4HI GCNGC 1 cut(s) 96
FokI GGATG 1 cut(s) 80
Fsp4HI GCNGC 1 cut(s) 96
GluI GCNGC 1 cut(s) 96
GsuI CTGGAG 1 cut(s) 278
HaeIII GGCC 1 cut(s) 188
Hin1II CATG 1 cut(s) 223
HindIII AAGCTT 1 cut(s) 153
HinfI GANTC 2 cut(s) 5, 165
HpyAV CCTTC 3 cut(s) 58, 130, 240
HpyF10VI GCNNNNNNNGC 1 cut(s) 274
HpyF3I CTNAG 2 cut(s) 74, 99
Hsp92II CATG 1 cut(s) 223
Ksp22I TGATCA 3 cut(s) 28, 205, 295
Kzo9I GATC 3 cut(s) 28, 205, 295
LpnPI CCDG 1 cut(s) 242
Lsp1109I GCAGC 1 cut(s) 82
MalI GATC 3 cut(s) 30, 207, 297
MboI GATC 3 cut(s) 28, 205, 295
MboII GAAGA 3 cut(s) 125, 164, 167
MluCI AATT 3 cut(s) 17, 24, 127
MnlI CCTC 2 cut(s) 126, 258
MseI TTAA 1 cut(s) 126
MslI CAYNNNNRTG 1 cut(s) 224
MwoI GCNNNNNNNGC 1 cut(s) 274
NdeII GATC 3 cut(s) 28, 205, 295
NlaIII CATG 1 cut(s) 223
NlaIV GGNNCC 1 cut(s) 251
PfeI GAWTC 2 cut(s) 5, 165
PkrI GCNGC 1 cut(s) 97
PshBI ATTAAT 1 cut(s) 126
PspN4I GGNNCC 1 cut(s) 251
RseI CAYNNNNRTG 1 cut(s) 224
SaqAI TTAA 1 cut(s) 126
SatI GCNGC 1 cut(s) 96
Sau3AI GATC 3 cut(s) 28, 205, 295
SetI ASST 3 cut(s) 157, 251, 279
SgeI CNNG 5 cut(s) 58, 144, 213, 232, 269
SmiMI CAYNNNNRTG 1 cut(s) 224
Sse9I AATT 3 cut(s) 17, 24, 127
SsiI CCGC 1 cut(s) 179
TaqI TCGA 2 cut(s) 131, 163
TasI AATT 3 cut(s) 17, 24, 127
TfiI GAWTC 2 cut(s) 5, 165
Tru1I TTAA 1 cut(s) 126
Tru9I TTAA 1 cut(s) 126
TscAI CASTG 1 cut(s) 261
TseI GCWGC 1 cut(s) 95
TspDTI ATGAA 3 cut(s) 84, 126, 148
TspRI CASTG 1 cut(s) 261
VspI ATTAAT 1 cut(s) 126
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.