RLG00000030285
NAC Family

Chromatin structure-remodeling complex protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0001340
Physical Location & Seq
Forward (+)
59011468 .. 59015071
3604 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000030285

Sequence Viewer

Length: 537 bp
ATGGCAGCTTCGTCACATAATGTTGAGTTGGAAGCAACCAAGTTTCTGCACAAACTCATTCAGGACTCTACAGATGAGCCGGCCAAACTTGCCACCAAGCTCTATGTGATACTGCAGCACATGAAGAAGTGGAGTGGCAAGGAACATTCCATGCCGTATCAAGTGATATCAAGAATTGATTTTAGTTTACTTGCGGTTGGGCCACATGGCCTTGATATTGAGGCTTTGAAGTCATCACGCATTCCTTTGCCCAGTGGAGCTCAGACAGGGTCTTCTCGGGCTGCTGGAGTTGCAAAAGATTCCAATCCGGGCTTGGCCAAAACTGAGGTGTCCAAGATGGACCCATTTTCTTCAAGTAGACCACCTGTTGGACCTATCAGTACAGGGCATGACTATTATCAAGGATCTGCAACTCATCGAAATAGTAATGTGATGGCAGAAATTCCAATGCAGCAGTCAACAGCTCCATCACCTGGATCAAGTTCTTTTTGGCAAGATTCAAGGAGCTGTGCCTGTGTAGGCTGGCAGGCAAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000166 GO:0000228 GO:0000785 GO:0000790 GO:0000988 GO:0000990 GO:0000991 GO:0002831 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005829 GO:0006139 GO:0006325 GO:0006338 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0006950 GO:0006996 GO:0007275 GO:0008026 GO:0008094 GO:0008144 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009611 GO:0009653 GO:0009791 GO:0009889 GO:0009908 GO:0009966 GO:0009987 GO:0010104 GO:0010199 GO:0010467 GO:0010468 GO:0010556 GO:0010646 GO:0010959 GO:0016043 GO:0016070 GO:0016462 GO:0016514 GO:0016586 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017076 GO:0017111 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022414 GO:0023051 GO:0030554 GO:0031323 GO:0031326 GO:0031347 GO:0031974 GO:0031981 GO:0032101 GO:0032392 GO:0032501 GO:0032502 GO:0032508 GO:0032553 GO:0032555 GO:0032559 GO:0032774 GO:0032879 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0034756 GO:0035639 GO:0036094 GO:0040029 GO:0042623 GO:0043044 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043269 GO:0043900 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0048367 GO:0048583 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0048859 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051171 GO:0051252 GO:0051276 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0070035 GO:0070297 GO:0070603 GO:0071103 GO:0071704 GO:0071840 GO:0080090 GO:0080134 GO:0090304 GO:0090567 GO:0090691 GO:0097159 GO:0097367 GO:0097659 GO:0140097 GO:0140110 GO:1900150 GO:1900390 GO:1900393 GO:1900400 GO:1901265 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902494 GO:1902531 GO:1903506 GO:1904949 GO:2000022 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04714 ko05225 map04714 map05225
Pfam Domains
Protein Families
Helicase_C SNF2_N SnAC

Protein Analysis

179

Amino Acids

19.15

Weight (kDa)

8.89

Isoelectric Point (pI)

61.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 368, 473
AccI GTMKAC 1 cut(s) 358
AciI CCGC 1 cut(s) 194
AclWI GGATC 2 cut(s) 412, 484
AcoI YGGCCR 2 cut(s) 81, 315
AcsI RAATTY 1 cut(s) 441
AfaI GTAC 1 cut(s) 382
AfiI CCNNNNNNNGG 2 cut(s) 368, 473
AgsI TTSAA 3 cut(s) 229, 354, 501
AjnI CCWGG 1 cut(s) 472
AluBI AGCT 5 cut(s) 8, 100, 260, 464, 507
AluI AGCT 5 cut(s) 8, 100, 260, 464, 507
Alw21I GWGCWC 1 cut(s) 262
AlwI GGATC 2 cut(s) 412, 484
Ama87I CYCGRG 1 cut(s) 276
AoxI GGCC 4 cut(s) 81, 200, 208, 315
ApeKI GCWGC 4 cut(s) 5, 115, 281, 451
ApoI RAATTY 1 cut(s) 441
AspS9I GGNCC 3 cut(s) 200, 340, 371
AsuC2I CCSGG 1 cut(s) 309
AsuHPI GGTGA 1 cut(s) 462
AvaI CYCGRG 1 cut(s) 276
AvaII GGWCC 2 cut(s) 340, 371
BalI TGGCCA 1 cut(s) 317
BanII GRGCYC 1 cut(s) 262
BbsI GAAGAC 1 cut(s) 264
Bbv12I GWGCWC 1 cut(s) 262
BbvI GCAGC 4 cut(s) 17, 127, 268, 463
BccI CCATC 3 cut(s) 331, 427, 475
BceAI ACGGC 1 cut(s) 139
BciT130I CCWGG 1 cut(s) 474
BcnI CCSGG 1 cut(s) 309
BfmI CTRYAG 2 cut(s) 69, 113
BisI GCNGC 4 cut(s) 6, 116, 282, 452
BlsI GCNGC 4 cut(s) 7, 117, 283, 453
Bme1390I CCNGG 2 cut(s) 309, 474
Bme18I GGWCC 2 cut(s) 340, 371
BmeT110I CYCGRG 1 cut(s) 276
BmgT120I GGNCC 3 cut(s) 200, 340, 371
BmiI GGNNCC 1 cut(s) 342
BmrFI CCNGG 2 cut(s) 309, 474
BmrI ACTGGG 1 cut(s) 246
BmuI ACTGGG 1 cut(s) 246
BpiI GAAGAC 1 cut(s) 264
BpmI CTGGAG 1 cut(s) 306
BpuMI CCSGG 1 cut(s) 309
BsaBI GATNNNNATC 1 cut(s) 303
Bsc4I CCNNNNNNNGG 2 cut(s) 368, 473
Bse118I RCCGGY 1 cut(s) 79
Bse1I ACTGG 1 cut(s) 252
Bse8I GATNNNNATC 1 cut(s) 303
BseBI CCWGG 1 cut(s) 474
BseJI GATNNNNATC 1 cut(s) 303
BseLI CCNNNNNNNGG 2 cut(s) 368, 473
BseMII CTCAG 2 cut(s) 275, 315
BseNI ACTGG 1 cut(s) 252
BseXI GCAGC 4 cut(s) 17, 127, 268, 463
BsgI GTGCAG 1 cut(s) 32
BshFI GGCC 4 cut(s) 83, 202, 210, 317
BsiHKAI GWGCWC 1 cut(s) 262
BsiHKCI CYCGRG 1 cut(s) 276
BsiSI CCGG 2 cut(s) 80, 308
BslI CCNNNNNNNGG 2 cut(s) 368, 473
BsmI GAATGC 1 cut(s) 240
BsnI GGCC 4 cut(s) 83, 202, 210, 317
BsoBI CYCGRG 1 cut(s) 276
Bsp1286I GDGCHC 1 cut(s) 262
Bsp143I GATC 2 cut(s) 404, 476
BspACI CCGC 1 cut(s) 194
BspANI GGCC 4 cut(s) 83, 202, 210, 317
BspCNI CTCAG 2 cut(s) 274, 316
BspLI GGNNCC 1 cut(s) 342
BspMAI CTGCAG 1 cut(s) 117
BspPI GGATC 2 cut(s) 412, 484
BsrFI RCCGGY 1 cut(s) 79
BsrI ACTGG 1 cut(s) 252
BssAI RCCGGY 1 cut(s) 79
BssMI GATC 2 cut(s) 404, 476
Bst2UI CCWGG 1 cut(s) 474
BstC8I GCNNGC 3 cut(s) 81, 524, 528
BstDEI CTNAG 2 cut(s) 261, 324
BstKTI GATC 2 cut(s) 407, 479
BstMBI GATC 2 cut(s) 404, 476
BstMWI GCNNNNNNNGC 2 cut(s) 89, 290
BstNI CCWGG 1 cut(s) 474
BstSCI CCNGG 2 cut(s) 307, 472
BstSFI CTRYAG 2 cut(s) 69, 113
BstV1I GCAGC 4 cut(s) 17, 127, 268, 463
BstV2I GAAGAC 1 cut(s) 264
BstX2I RGATCY 1 cut(s) 404
BstYI RGATCY 1 cut(s) 404
BsuRI GGCC 4 cut(s) 83, 202, 210, 317
BtsIMutI CAGTG 1 cut(s) 259
Cac8I GCNNGC 3 cut(s) 81, 524, 528
Cfr10I RCCGGY 1 cut(s) 79
Cfr13I GGNCC 3 cut(s) 200, 340, 371
Csp6I GTAC 1 cut(s) 381
CviAII CATG 4 cut(s) 121, 151, 206, 389
CviQI GTAC 1 cut(s) 381
DdeI CTNAG 2 cut(s) 261, 324
DpnI GATC 2 cut(s) 406, 478
DpnII GATC 2 cut(s) 404, 476
EaeI YGGCCR 2 cut(s) 81, 315
Ecl136II GAGCTC 1 cut(s) 260
Eco24I GRGCYC 1 cut(s) 262
Eco32I GATATC 1 cut(s) 168
Eco47I GGWCC 2 cut(s) 340, 371
Eco53kI GAGCTC 1 cut(s) 260
Eco88I CYCGRG 1 cut(s) 276
EcoICRI GAGCTC 1 cut(s) 260
EcoRII CCWGG 1 cut(s) 472
EcoRV GATATC 1 cut(s) 168
EcoT38I GRGCYC 1 cut(s) 262
FaeI CATG 4 cut(s) 124, 154, 209, 392
FaiI YATR 6 cut(s) 18, 105, 122, 152, 207, 390
FatI CATG 4 cut(s) 120, 150, 205, 388
FblI GTMKAC 1 cut(s) 358
Fnu4HI GCNGC 4 cut(s) 6, 116, 282, 452
FriOI GRGCYC 1 cut(s) 262
Fsp4HI GCNGC 4 cut(s) 6, 116, 282, 452
GluI GCNGC 4 cut(s) 6, 116, 282, 452
GsuI CTGGAG 1 cut(s) 306
HaeIII GGCC 4 cut(s) 83, 202, 210, 317
HapII CCGG 2 cut(s) 80, 308
Hin1II CATG 4 cut(s) 124, 154, 209, 392
HincII GTYRAC 1 cut(s) 459
HindII GTYRAC 1 cut(s) 459
HinfI GANTC 3 cut(s) 65, 299, 497
HpaII CCGG 2 cut(s) 80, 308
HphI GGTGA 1 cut(s) 462
Hpy166II GTNNAC 3 cut(s) 188, 359, 459
Hpy188I TCNGA 1 cut(s) 264
Hpy188III TCNNGA 2 cut(s) 62, 171
Hpy8I GTNNAC 3 cut(s) 188, 359, 459
HpyCH4V TGCA 5 cut(s) 49, 115, 293, 410, 451
HpyF10VI GCNNNNNNNGC 2 cut(s) 89, 290
HpyF3I CTNAG 2 cut(s) 261, 324
Hsp92II CATG 4 cut(s) 124, 154, 209, 392
KroI GCCGGC 1 cut(s) 79
KroNI GCCGGC 1 cut(s) 81
Kzo9I GATC 2 cut(s) 404, 476
LmnI GCTCC 3 cut(s) 257, 469, 504
Lsp1109I GCAGC 4 cut(s) 17, 127, 268, 463
MaeIII GTNAC 1 cut(s) 12
MalI GATC 2 cut(s) 406, 478
MboI GATC 2 cut(s) 404, 476
MboII GAAGA 3 cut(s) 136, 264, 342
MflI RGATCY 1 cut(s) 404
MhlI GDGCHC 1 cut(s) 262
MlsI TGGCCA 1 cut(s) 317
MluCI AATT 2 cut(s) 174, 441
MluNI TGGCCA 1 cut(s) 317
MlyI GAGTC 1 cut(s) 59
MmeI TCCRAC 2 cut(s) 9, 349
MnlI CCTC 2 cut(s) 214, 319
Mox20I TGGCCA 1 cut(s) 317
MroNI GCCGGC 1 cut(s) 79
MscI TGGCCA 1 cut(s) 317
Msp20I TGGCCA 1 cut(s) 317
MspI CCGG 2 cut(s) 80, 308
MspR9I CCNGG 2 cut(s) 309, 474
Mva1269I GAATGC 1 cut(s) 240
MvaI CCWGG 1 cut(s) 474
MwoI GCNNNNNNNGC 2 cut(s) 89, 290
NaeI GCCGGC 1 cut(s) 81
NciI CCSGG 1 cut(s) 309
NdeII GATC 2 cut(s) 404, 476
NgoMIV GCCGGC 1 cut(s) 79
NlaIII CATG 4 cut(s) 124, 154, 209, 392
NlaIV GGNNCC 1 cut(s) 342
NmuCI GTSAC 1 cut(s) 12
PctI GAATGC 1 cut(s) 240
PdiI GCCGGC 1 cut(s) 81
PfeI GAWTC 2 cut(s) 299, 497
PflFI GACNNNGTC 1 cut(s) 268
PflMI CCANNNNNTGG 2 cut(s) 368, 473
PkrI GCNGC 4 cut(s) 7, 117, 283, 453
PleI GAGTC 1 cut(s) 59
PpsI GAGTC 1 cut(s) 59
Psp124BI GAGCTC 1 cut(s) 262
Psp6I CCWGG 1 cut(s) 472
PspGI CCWGG 1 cut(s) 472
PspN4I GGNNCC 1 cut(s) 342
PspPI GGNCC 3 cut(s) 200, 340, 371
PstI CTGCAG 1 cut(s) 117
PsuI RGATCY 1 cut(s) 404
PsyI GACNNNGTC 1 cut(s) 268
RsaI GTAC 1 cut(s) 382
RsaNI GTAC 1 cut(s) 381
SacI GAGCTC 1 cut(s) 262
SatI GCNGC 4 cut(s) 6, 116, 282, 452
Sau3AI GATC 2 cut(s) 404, 476
Sau96I GGNCC 3 cut(s) 200, 340, 371
SchI GAGTC 1 cut(s) 59
ScrFI CCNGG 2 cut(s) 309, 474
SduI GDGCHC 1 cut(s) 262
SetI ASST 9 cut(s) 10, 102, 262, 330, 367, 376, 466, 475, 509
SfcI CTRYAG 2 cut(s) 69, 113
SinI GGWCC 2 cut(s) 340, 371
Sse9I AATT 2 cut(s) 174, 441
SsiI CCGC 1 cut(s) 194
SstI GAGCTC 1 cut(s) 262
StyD4I CCNGG 2 cut(s) 307, 472
TaqI TCGA 1 cut(s) 418
TasI AATT 2 cut(s) 174, 441
TatI WGTACW 1 cut(s) 380
TfiI GAWTC 2 cut(s) 299, 497
TscAI CASTG 1 cut(s) 259
TseFI GTSAC 1 cut(s) 12
TseI GCWGC 4 cut(s) 5, 115, 281, 451
Tsp45I GTSAC 1 cut(s) 12
TspDTI ATGAA 1 cut(s) 137
TspRI CASTG 1 cut(s) 259
Tth111I GACNNNGTC 1 cut(s) 268
Van91I CCANNNNNTGG 2 cut(s) 368, 473
VpaK11BI GGWCC 2 cut(s) 340, 371
XapI RAATTY 1 cut(s) 441
XcmI CCANNNNNNNNNTGG 1 cut(s) 310
XmiI GTMKAC 1 cut(s) 358
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.