mediator of RNA polymerase II transcription subunit
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| HSP70 | PF00012 | 9 - 524 | 1.3e-205 | Hsp70 protein |
| MreB_Mbl | PF06723 | 125 - 380 | 2.5e-17 | MreB/Mbl protein |
| HSP70 | PF00012 | 543 - 812 | 8.3e-117 | Hsp70 protein |
| MreB_Mbl | PF06723 | 677 - 788 | 5.9e-10 | MreB/Mbl protein |
| Retrotran_gag_2 | PF14223 | 985 - 1132 | 5.7e-19 | gag-polypeptide of LTR copia-type |
| Enolase_N | PF03952 | 1309 - 1355 | 7.7e-06 | Enolase, N-terminal domain |
| HSP70 | PF00012 | 1504 - 1748 | 4.7e-70 | Hsp70 protein |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 2 cut(s) | 1732, 3269 |
| AccI | GTMKAC | 2 cut(s) | 2794, 3918 |
| AccII | CGCG | 1 cut(s) | 470 |
| AciI | CCGC | 7 cut(s) | 621, 624, 1332, 1831, 2002, 2229, 2827 |
| AclWI | GGATC | 6 cut(s) | 427, 1552, 2035, 2585, 3210, 4957 |
| AcoI | YGGCCR | 3 cut(s) | 337, 1886, 4436 |
| AcuI | CTGAAG | 5 cut(s) | 381, 1989, 2034, 3402, 4119 |
| AcvI | CACGTG | 1 cut(s) | 4496 |
| AdeI | CACNNNGTG | 5 cut(s) | 1244, 1600, 2084, 2650, 3731 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 1509, 5218 |
| AflIII | ACRYGT | 3 cut(s) | 3525, 4495, 5199 |
| AgeI | ACCGGT | 1 cut(s) | 1505 |
| AjnI | CCWGG | 3 cut(s) | 3859, 5119, 5138 |
| AjuI | GAANNNNNNNTTGG | 6 cut(s) | 2007, 2039, 2360, 2392, 3945, 3977 |
| Alw21I | GWGCWC | 4 cut(s) | 796, 3778, 3913, 4380 |
| Alw26I | GTCTC | 9 cut(s) | 643, 2441, 2864, 3277, 3369, 3860, 4273, 4368, 5191 |
| AlwI | GGATC | 6 cut(s) | 427, 1552, 2035, 2585, 3210, 4957 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 1370, 2060 |
| Ama87I | CYCGRG | 2 cut(s) | 1273, 4168 |
| AseI | ATTAAT | 2 cut(s) | 1107, 1287 |
| AsiGI | ACCGGT | 1 cut(s) | 1505 |
| Asp700I | GAANNNNTTC | 5 cut(s) | 1076, 2660, 3850, 3970, 4754 |
| AspLEI | GCGC | 1 cut(s) | 472 |
| AspS9I | GGNCC | 5 cut(s) | 117, 1725, 1907, 3791, 5123 |
| AsuC2I | CCSGG | 2 cut(s) | 1541, 3341 |
| AvaI | CYCGRG | 2 cut(s) | 1273, 4168 |
| AvaII | GGWCC | 5 cut(s) | 117, 1725, 1907, 3791, 5123 |
| BaeGI | GKGCMC | 1 cut(s) | 3597 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 240, 273, 1848, 1881 |
| BalI | TGGCCA | 3 cut(s) | 339, 1888, 4438 |
| BanII | GRGCYC | 2 cut(s) | 796, 4380 |
| BauI | CACGAG | 2 cut(s) | 912, 4590 |
| BbrPI | CACGTG | 1 cut(s) | 4496 |
| BbsI | GAAGAC | 1 cut(s) | 3267 |
| Bbv12I | GWGCWC | 4 cut(s) | 796, 3778, 3913, 4380 |
| BbvCI | CCTCAGC | 2 cut(s) | 1491, 5193 |
| BceAI | ACGGC | 1 cut(s) | 1717 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1831, 1865 |
| BciT130I | CCWGG | 3 cut(s) | 3861, 5121, 5140 |
| BciVI | GTATCC | 2 cut(s) | 1484, 5186 |
| BclI | TGATCA | 5 cut(s) | 79, 2049, 2940, 3223, 4237 |
| BcnI | CCSGG | 2 cut(s) | 1541, 3341 |
| BcoDI | GTCTC | 9 cut(s) | 643, 2441, 2864, 3277, 3369, 3860, 4273, 4368, 5191 |
| BfuI | GTATCC | 2 cut(s) | 1484, 5186 |
| BglII | AGATCT | 4 cut(s) | 772, 928, 1974, 2584 |
| BlpI | GCTNAGC | 1 cut(s) | 3330 |
| BmcAI | AGTACT | 3 cut(s) | 1655, 3197, 4915 |
| Bme1390I | CCNGG | 5 cut(s) | 1541, 3341, 3861, 5121, 5140 |
| Bme18I | GGWCC | 5 cut(s) | 117, 1725, 1907, 3791, 5123 |
| BmeT110I | CYCGRG | 2 cut(s) | 1273, 4168 |
| BmgT120I | GGNCC | 5 cut(s) | 117, 1725, 1907, 3791, 5123 |
| BmiI | GGNNCC | 1 cut(s) | 4641 |
| BmrFI | CCNGG | 5 cut(s) | 1541, 3341, 3861, 5121, 5140 |
| BoxI | GACNNNNGTC | 1 cut(s) | 3924 |
| BpiI | GAAGAC | 1 cut(s) | 3267 |
| BpmI | CTGGAG | 1 cut(s) | 5103 |
| Bpu10I | CCTNAGC | 3 cut(s) | 1491, 3996, 5193 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 3330 |
| BpuEI | CTTGAG | 4 cut(s) | 2464, 2803, 4350, 4364 |
| BpuMI | CCSGG | 2 cut(s) | 1541, 3341 |
| BsaAI | YACGTR | 1 cut(s) | 4496 |
| BsaBI | GATNNNNATC | 4 cut(s) | 2132, 2304, 2589, 5228 |
| BsaI | GGTCTC | 2 cut(s) | 3369, 4273 |
| BsaJI | CCNNGG | 6 cut(s) | 700, 1248, 1540, 1983, 2676, 4728 |
| BsaWI | WCCGGW | 1 cut(s) | 1505 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 1509, 5218 |
| Bse118I | RCCGGY | 1 cut(s) | 1505 |
| Bse1I | ACTGG | 3 cut(s) | 2822, 3718, 4335 |
| Bse3DI | GCAATG | 8 cut(s) | 552, 641, 2160, 3375, 3720, 3775, 4008, 4377 |
| Bse8I | GATNNNNATC | 4 cut(s) | 2132, 2304, 2589, 5228 |
| BseBI | CCWGG | 3 cut(s) | 3861, 5121, 5140 |
| BseDI | CCNNGG | 6 cut(s) | 700, 1248, 1540, 1983, 2676, 4728 |
| BseGI | GGATG | 9 cut(s) | 268, 371, 1207, 1411, 1979, 2248, 2386, 4039, 4669 |
| BseJI | GATNNNNATC | 4 cut(s) | 2132, 2304, 2589, 5228 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 1509, 5218 |
| BseMI | GCAATG | 8 cut(s) | 552, 641, 2160, 3375, 3720, 3775, 4008, 4377 |
| BseNI | ACTGG | 3 cut(s) | 2822, 3718, 4335 |
| BseRI | GAGGAG | 3 cut(s) | 24, 847, 2459 |
| BseSI | GKGCMC | 1 cut(s) | 3597 |
| BsgI | GTGCAG | 2 cut(s) | 2913, 4833 |
| Bsh1236I | CGCG | 1 cut(s) | 470 |
| Bsh1285I | CGRYCG | 2 cut(s) | 1510, 2466 |
| BshTI | ACCGGT | 1 cut(s) | 1505 |
| BsiEI | CGRYCG | 2 cut(s) | 1510, 2466 |
| BsiHKAI | GWGCWC | 4 cut(s) | 796, 3778, 3913, 4380 |
| BsiHKCI | CYCGRG | 2 cut(s) | 1273, 4168 |
| BsiSI | CCGG | 4 cut(s) | 1506, 1540, 2295, 3341 |
| BslFI | GGGAC | 4 cut(s) | 58, 434, 1418, 2042 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 1509, 5218 |
| BsmAI | GTCTC | 9 cut(s) | 643, 2441, 2864, 3277, 3369, 3860, 4273, 4368, 5191 |
| BsmFI | GGGAC | 4 cut(s) | 58, 434, 1418, 2042 |
| BsmI | GAATGC | 3 cut(s) | 2047, 5112, 5272 |
| Bso31I | GGTCTC | 2 cut(s) | 3369, 4273 |
| BsoBI | CYCGRG | 2 cut(s) | 1273, 4168 |
| Bsp1286I | GDGCHC | 5 cut(s) | 796, 3597, 3778, 3913, 4380 |
| Bsp1407I | TGTACA | 1 cut(s) | 2982 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 3330 |
| Bsp19I | CCATGG | 3 cut(s) | 1248, 1983, 2676 |
| BspACI | CCGC | 7 cut(s) | 621, 624, 1332, 1831, 2002, 2229, 2827 |
| BspFNI | CGCG | 1 cut(s) | 470 |
| BspHI | TCATGA | 2 cut(s) | 4950, 5017 |
| BspLI | GGNNCC | 1 cut(s) | 4641 |
| BspMAI | CTGCAG | 6 cut(s) | 508, 550, 2116, 2155, 4512, 4831 |
| BspPI | GGATC | 6 cut(s) | 427, 1552, 2035, 2585, 3210, 4957 |
| BspQI | GCTCTTC | 3 cut(s) | 1042, 3027, 4720 |
| BspTNI | GGTCTC | 2 cut(s) | 3369, 4273 |
| BsrDI | GCAATG | 8 cut(s) | 552, 641, 2160, 3375, 3720, 3775, 4008, 4377 |
| BsrFI | RCCGGY | 1 cut(s) | 1505 |
| BsrGI | TGTACA | 1 cut(s) | 2982 |
| BsrI | ACTGG | 3 cut(s) | 2822, 3718, 4335 |
| BssAI | RCCGGY | 1 cut(s) | 1505 |
| BssECI | CCNNGG | 6 cut(s) | 700, 1248, 1540, 1983, 2676, 4728 |
| BssSI | CACGAG | 2 cut(s) | 912, 4590 |
| BssT1I | CCWWGG | 5 cut(s) | 700, 1248, 1983, 2676, 4728 |
| Bst2BI | CACGAG | 2 cut(s) | 912, 4590 |
| Bst2UI | CCWGG | 3 cut(s) | 3861, 5121, 5140 |
| BstAPI | GCANNNNNTGC | 5 cut(s) | 554, 1066, 2162, 4741, 4811 |
| BstAUI | TGTACA | 1 cut(s) | 2982 |
| BstBAI | YACGTR | 1 cut(s) | 4496 |
| BstC8I | GCNNGC | 4 cut(s) | 508, 2116, 3513, 3537 |
| BstDSI | CCRYGG | 3 cut(s) | 1248, 1983, 2676 |
| BstEII | GGTNACC | 1 cut(s) | 325 |
| BstF5I | GGATG | 9 cut(s) | 268, 371, 1207, 1411, 1979, 2248, 2386, 4039, 4669 |
| BstFNI | CGCG | 1 cut(s) | 470 |
| BstHHI | GCGC | 1 cut(s) | 472 |
| BstMAI | GTCTC | 9 cut(s) | 643, 2441, 2864, 3277, 3369, 3860, 4273, 4368, 5191 |
| BstMCI | CGRYCG | 2 cut(s) | 1510, 2466 |
| BstNI | CCWGG | 3 cut(s) | 3861, 5121, 5140 |
| BstNSI | RCATGY | 3 cut(s) | 2427, 3529, 5203 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 3924 |
| BstPI | GGTNACC | 1 cut(s) | 325 |
| BstSCI | CCNGG | 5 cut(s) | 1539, 3339, 3859, 5119, 5138 |
| BstSLI | GKGCMC | 1 cut(s) | 3597 |
| BstUI | CGCG | 1 cut(s) | 470 |
| BstV2I | GAAGAC | 1 cut(s) | 3267 |
| BstX2I | RGATCY | 6 cut(s) | 772, 928, 1544, 1974, 2584, 2590 |
| BstYI | RGATCY | 6 cut(s) | 772, 928, 1544, 1974, 2584, 2590 |
| BsuI | GTATCC | 2 cut(s) | 1484, 5186 |
| BtgI | CCRYGG | 3 cut(s) | 1248, 1983, 2676 |
| BtsCI | GGATG | 9 cut(s) | 268, 371, 1207, 1411, 1979, 2248, 2386, 4039, 4669 |
| BtsI | GCAGTG | 4 cut(s) | 1128, 2052, 2289, 2985 |
| Cac8I | GCNNGC | 4 cut(s) | 508, 2116, 3513, 3537 |
| CaiI | CAGNNNCTG | 2 cut(s) | 1370, 2060 |
| CciI | TCATGA | 2 cut(s) | 4950, 5017 |
| CfoI | GCGC | 1 cut(s) | 472 |
| Cfr10I | RCCGGY | 1 cut(s) | 1505 |
| Cfr13I | GGNCC | 5 cut(s) | 117, 1725, 1907, 3791, 5123 |
| CseI | GACGC | 2 cut(s) | 383, 476 |
| CspAI | ACCGGT | 1 cut(s) | 1505 |
| DraI | TTTAAA | 1 cut(s) | 270 |
| DraIII | CACNNNGTG | 5 cut(s) | 1244, 1600, 2084, 2650, 3731 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 1732, 3269 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 1732, 3269 |
| EaeI | YGGCCR | 3 cut(s) | 337, 1886, 4436 |
| Ecl136II | GAGCTC | 2 cut(s) | 794, 4378 |
| Eco130I | CCWWGG | 5 cut(s) | 700, 1248, 1983, 2676, 4728 |
| Eco147I | AGGCCT | 2 cut(s) | 510, 2118 |
| Eco24I | GRGCYC | 2 cut(s) | 796, 4380 |
| Eco31I | GGTCTC | 2 cut(s) | 3369, 4273 |
| Eco32I | GATATC | 1 cut(s) | 4885 |
| Eco47I | GGWCC | 5 cut(s) | 117, 1725, 1907, 3791, 5123 |
| Eco53kI | GAGCTC | 2 cut(s) | 794, 4378 |
| Eco57I | CTGAAG | 5 cut(s) | 381, 1989, 2034, 3402, 4119 |
| Eco72I | CACGTG | 1 cut(s) | 4496 |
| Eco88I | CYCGRG | 2 cut(s) | 1273, 4168 |
| Eco91I | GGTNACC | 1 cut(s) | 325 |
| EcoICRI | GAGCTC | 2 cut(s) | 794, 4378 |
| EcoO109I | RGGNCCY | 2 cut(s) | 1907, 5123 |
| EcoO65I | GGTNACC | 1 cut(s) | 325 |
| EcoRI | GAATTC | 2 cut(s) | 1278, 3762 |
| EcoRII | CCWGG | 3 cut(s) | 3859, 5119, 5138 |
| EcoRV | GATATC | 1 cut(s) | 4885 |
| EcoT14I | CCWWGG | 5 cut(s) | 700, 1248, 1983, 2676, 4728 |
| EcoT22I | ATGCAT | 2 cut(s) | 2425, 3480 |
| EcoT38I | GRGCYC | 2 cut(s) | 796, 4380 |
| ErhI | CCWWGG | 5 cut(s) | 700, 1248, 1983, 2676, 4728 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 2007, 2039, 3140, 3172, 3375, 3407 |
| FaqI | GGGAC | 4 cut(s) | 58, 434, 1418, 2042 |
| FauI | CCCGC | 2 cut(s) | 1995, 2222 |
| FauNDI | CATATG | 3 cut(s) | 559, 3498, 4807 |
| FbaI | TGATCA | 5 cut(s) | 79, 2049, 2940, 3223, 4237 |
| FblI | GTMKAC | 2 cut(s) | 2794, 3918 |
| FokI | GGATG | 9 cut(s) | 275, 358, 1214, 1418, 1966, 2255, 2393, 4046, 4676 |
| FriOI | GRGCYC | 2 cut(s) | 796, 4380 |
| GlaI | GCGC | 1 cut(s) | 471 |
| GsuI | CTGGAG | 1 cut(s) | 5103 |
| HapII | CCGG | 4 cut(s) | 1506, 1540, 2295, 3341 |
| HgaI | GACGC | 2 cut(s) | 383, 476 |
| HhaI | GCGC | 1 cut(s) | 472 |
| Hin6I | GCGC | 1 cut(s) | 470 |
| HinP1I | GCGC | 1 cut(s) | 470 |
| HincII | GTYRAC | 3 cut(s) | 871, 1708, 4421 |
| HindII | GTYRAC | 3 cut(s) | 871, 1708, 4421 |
| HindIII | AAGCTT | 3 cut(s) | 1880, 3622, 3977 |
| HpaII | CCGG | 4 cut(s) | 1506, 1540, 2295, 3341 |
| HpyCH4IV | ACGT | 6 cut(s) | 475, 1243, 1859, 2208, 4495, 4677 |
| HpySE526I | ACGT | 6 cut(s) | 475, 1243, 1859, 2208, 4495, 4677 |
| HspAI | GCGC | 1 cut(s) | 470 |
| Ksp22I | TGATCA | 5 cut(s) | 79, 2049, 2940, 3223, 4237 |
| LguI | GCTCTTC | 3 cut(s) | 1042, 3027, 4720 |
| LmnI | GCTCC | 6 cut(s) | 151, 3139, 3773, 4375, 4639, 4768 |
| MaeII | ACGT | 6 cut(s) | 475, 1243, 1859, 2208, 4495, 4677 |
| MfeI | CAATTG | 2 cut(s) | 855, 2788 |
| MflI | RGATCY | 6 cut(s) | 772, 928, 1544, 1974, 2584, 2590 |
| MhlI | GDGCHC | 5 cut(s) | 796, 3597, 3778, 3913, 4380 |
| MlsI | TGGCCA | 3 cut(s) | 339, 1888, 4438 |
| MluNI | TGGCCA | 3 cut(s) | 339, 1888, 4438 |
| MlyI | GAGTC | 1 cut(s) | 4302 |
| MmeI | TCCRAC | 4 cut(s) | 1490, 3046, 3908, 3943 |
| Mox20I | TGGCCA | 3 cut(s) | 339, 1888, 4438 |
| Mph1103I | ATGCAT | 2 cut(s) | 2425, 3480 |
| MroXI | GAANNNNTTC | 5 cut(s) | 1076, 2660, 3850, 3970, 4754 |
| MscI | TGGCCA | 3 cut(s) | 339, 1888, 4438 |
| MslI | CAYNNNNRTG | 4 cut(s) | 81, 1289, 4877, 4955 |
| Msp20I | TGGCCA | 3 cut(s) | 339, 1888, 4438 |
| MspA1I | CMGCKG | 4 cut(s) | 1370, 4268, 4485, 4817 |
| MspI | CCGG | 4 cut(s) | 1506, 1540, 2295, 3341 |
| MspR9I | CCNGG | 5 cut(s) | 1541, 3341, 3861, 5121, 5140 |
| MunI | CAATTG | 2 cut(s) | 855, 2788 |
| Mva1269I | GAATGC | 3 cut(s) | 2047, 5112, 5272 |
| MvaI | CCWGG | 3 cut(s) | 3861, 5121, 5140 |
| MvnI | CGCG | 1 cut(s) | 470 |
| NciI | CCSGG | 2 cut(s) | 1541, 3341 |
| NcoI | CCATGG | 3 cut(s) | 1248, 1983, 2676 |
| NdeI | CATATG | 3 cut(s) | 559, 3498, 4807 |
| NlaIV | GGNNCC | 1 cut(s) | 4641 |
| NmeAIII | GCCGAG | 1 cut(s) | 1623 |
| NmuCI | GTSAC | 9 cut(s) | 325, 1204, 1215, 1535, 1871, 2247, 2848, 4199, 4579 |
| NsiI | ATGCAT | 2 cut(s) | 2425, 3480 |
| NspI | RCATGY | 3 cut(s) | 2427, 3529, 5203 |
| PaeR7I | CTCGAG | 2 cut(s) | 1273, 4168 |
| PagI | TCATGA | 2 cut(s) | 4950, 5017 |
| PceI | AGGCCT | 2 cut(s) | 510, 2118 |
| PciI | ACATGT | 2 cut(s) | 3525, 5199 |
| PciSI | GCTCTTC | 3 cut(s) | 1042, 3027, 4720 |
| PctI | GAATGC | 3 cut(s) | 2047, 5112, 5272 |
| PdmI | GAANNNNTTC | 5 cut(s) | 1076, 2660, 3850, 3970, 4754 |
| PfeI | GAWTC | 9 cut(s) | 379, 520, 2522, 2554, 2818, 3182, 3971, 4722, 5224 |
| PinAI | ACCGGT | 1 cut(s) | 1505 |
| Ple19I | CGATCG | 1 cut(s) | 2466 |
| PleI | GAGTC | 1 cut(s) | 4301 |
| PmaCI | CACGTG | 1 cut(s) | 4496 |
| PmlI | CACGTG | 1 cut(s) | 4496 |
| PpsI | GAGTC | 1 cut(s) | 4301 |
| Ppu21I | YACGTR | 1 cut(s) | 4496 |
| PpuMI | RGGWCCY | 2 cut(s) | 1907, 5123 |
| PscI | ACATGT | 2 cut(s) | 3525, 5199 |
| PshAI | GACNNNNGTC | 1 cut(s) | 3924 |
| PshBI | ATTAAT | 2 cut(s) | 1107, 1287 |
| Psp124BI | GAGCTC | 2 cut(s) | 796, 4380 |
| Psp5II | RGGWCCY | 2 cut(s) | 1907, 5123 |
| Psp6I | CCWGG | 3 cut(s) | 3859, 5119, 5138 |
| PspCI | CACGTG | 1 cut(s) | 4496 |
| PspEI | GGTNACC | 1 cut(s) | 325 |
| PspGI | CCWGG | 3 cut(s) | 3859, 5119, 5138 |
| PspN4I | GGNNCC | 1 cut(s) | 4641 |
| PspPI | GGNCC | 5 cut(s) | 117, 1725, 1907, 3791, 5123 |
| PspPPI | RGGWCCY | 2 cut(s) | 1907, 5123 |
| PspXI | VCTCGAGB | 1 cut(s) | 4168 |
| PsrI | GAACNNNNNNTAC | 4 cut(s) | 1291, 1323, 1563, 1595 |
| PstI | CTGCAG | 6 cut(s) | 508, 550, 2116, 2155, 4512, 4831 |
| PstNI | CAGNNNCTG | 2 cut(s) | 1370, 2060 |
| PsuI | RGATCY | 6 cut(s) | 772, 928, 1544, 1974, 2584, 2590 |
| PvuI | CGATCG | 1 cut(s) | 2466 |
| PvuII | CAGCTG | 4 cut(s) | 1370, 4268, 4485, 4817 |
| RseI | CAYNNNNRTG | 4 cut(s) | 81, 1289, 4877, 4955 |
| SacI | GAGCTC | 2 cut(s) | 796, 4380 |
| SapI | GCTCTTC | 3 cut(s) | 1042, 3027, 4720 |
| Sau96I | GGNCC | 5 cut(s) | 117, 1725, 1907, 3791, 5123 |
| ScaI | AGTACT | 3 cut(s) | 1655, 3197, 4915 |
| SchI | GAGTC | 1 cut(s) | 4302 |
| ScrFI | CCNGG | 5 cut(s) | 1541, 3341, 3861, 5121, 5140 |
| SduI | GDGCHC | 5 cut(s) | 796, 3597, 3778, 3913, 4380 |
| Sfr274I | CTCGAG | 2 cut(s) | 1273, 4168 |
| SinI | GGWCC | 5 cut(s) | 117, 1725, 1907, 3791, 5123 |
| SlaI | CTCGAG | 2 cut(s) | 1273, 4168 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 81, 1289, 4877, 4955 |
| SmlI | CTYRAG | 6 cut(s) | 1273, 2479, 2782, 4168, 4365, 4379 |
| SmoI | CTYRAG | 6 cut(s) | 1273, 2479, 2782, 4168, 4365, 4379 |
| SseBI | AGGCCT | 2 cut(s) | 510, 2118 |
| SsiI | CCGC | 7 cut(s) | 621, 624, 1332, 1831, 2002, 2229, 2827 |
| SspI | AATATT | 1 cut(s) | 601 |
| SstI | GAGCTC | 2 cut(s) | 796, 4380 |
| StuI | AGGCCT | 2 cut(s) | 510, 2118 |
| StyD4I | CCNGG | 5 cut(s) | 1539, 3339, 3859, 5119, 5138 |
| StyI | CCWWGG | 5 cut(s) | 700, 1248, 1983, 2676, 4728 |
| TaiI | ACGT | 6 cut(s) | 478, 1246, 1862, 2211, 4498, 4680 |
| TaqI | TCGA | 7 cut(s) | 1011, 1274, 1821, 2325, 2431, 2462, 4169 |
| TaqII | GACCGA | 1 cut(s) | 313 |
| TatI | WGTACW | 5 cut(s) | 1653, 2702, 2982, 3195, 4913 |
| TauI | GCSGC | 2 cut(s) | 624, 1335 |
| TfiI | GAWTC | 9 cut(s) | 379, 520, 2522, 2554, 2818, 3182, 3971, 4722, 5224 |
| TseFI | GTSAC | 9 cut(s) | 325, 1204, 1215, 1535, 1871, 2247, 2848, 4199, 4579 |
| Tsp45I | GTSAC | 9 cut(s) | 325, 1204, 1215, 1535, 1871, 2247, 2848, 4199, 4579 |
| TspGWI | ACGGA | 3 cut(s) | 164, 244, 1611 |
| VpaK11BI | GGWCC | 5 cut(s) | 117, 1725, 1907, 3791, 5123 |
| VspI | ATTAAT | 2 cut(s) | 1107, 1287 |
| XbaI | TCTAGA | 4 cut(s) | 788, 1040, 2587, 4718 |
| XceI | RCATGY | 3 cut(s) | 2427, 3529, 5203 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 4431 |
| XhoI | CTCGAG | 2 cut(s) | 1273, 4168 |
| XmiI | GTMKAC | 2 cut(s) | 2794, 3918 |
| XmnI | GAANNNNTTC | 5 cut(s) | 1076, 2660, 3850, 3970, 4754 |
| ZrmI | AGTACT | 3 cut(s) | 1655, 3197, 4915 |
| Zsp2I | ATGCAT | 2 cut(s) | 2425, 3480 |