Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0002282

Physical Location & Seq

Genomic Coordinates Forward (+)

21066970 .. 21067776

Gene Structure 807 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g17910.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 234 bp

ATGGCGGCTTCTTCTCTGCTCAGATCTACAGTCTCAGCTCCGTTGATCGAAGCCTCCCGCCCCGAACTCGCAGCGTCCGCCCCCTTTAATGGTGTCAAGCGTCGGGTTCAGTCGCAATCTGAACTGTCCCAAGGTGCAATCATCCATGTTTGGCACTTCCATCCCAAGCGGGTCATCATCTTTACAGATATGCAGCGCCAGGAGCGTCCAACCCATCAAGGCCACAGCCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004365 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0007275 GO:0008150 GO:0008152 GO:0008270 GO:0009536 GO:0009555 GO:0009719 GO:0009725 GO:0009735 GO:0009791 GO:0009908 GO:0010033 GO:0016020 GO:0016491 GO:0016620 GO:0016903 GO:0022414 GO:0022622 GO:0032501 GO:0032502 GO:0042221 GO:0042592 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043891 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0048229 GO:0048364 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048653 GO:0048658 GO:0048731 GO:0048827 GO:0048856 GO:0048878 GO:0050801 GO:0050896 GO:0055081 GO:0055114 GO:0061458 GO:0065007 GO:0065008 GO:0071704 GO:0080022 GO:0080144 GO:0090567 GO:0099402

KEGG Pathways

Metabolic & Signaling

ko00010 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 ko04066 ko05010 map00010 map00710 map01100 map01110 map01120 map01130 map01200 map01230 map04066 map05010

Pfam Domains

Protein Families

Gp_dh_C Gp_dh_N

Protein Analysis

78

Amino Acids

8.62

Weight (kDa)

11.27

Isoelectric Point (pI)

83.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002282)

Species	Orthologous Gene IDs
pyrus_communis	pycom10g17910
rosa_chinensis	RchiOBHm_Chr2g0127881 RchiOBHm_Chr2g0128071 RchiOBHm_Chr2g0168141 RchiOBHm_Chr4g0394061 RchiOBHm_Chr4g0409481 RchiOBHm_Chr5g0057941 RchiOBHm_Chr6g0289331
rosa_multiflora	Rmu_sc0001136.1_g000034 Rmu_sc0002501.1_g000016 Rmu_sc0003941.1_g000003 Rmu_sc0012303.1_g000002 Rmu_sc0018337.1_g000005 Rmu_sc0023137.1_g000011 Rmu_sc0037818.1_g000001 Rmu_ssc0000118.1_g000006
rosa_roxburghii	Rroxscaffold_177G00434380 Rroxscaffold_1G00074020 Rroxscaffold_2G00119630 Rroxscaffold_4G00297870 Rroxscaffold_4G00303680 Rroxscaffold_4G00311340 Rroxscaffold_5G00333250 Rroxscaffold_5G00333260 Rroxscaffold_5G00365770 Rroxscaffold_5G00382860 Rroxscaffold_6G00423070 Rroxscaffold_7G00193890 Rroxscaffold_7G00201810
rosa_rugosa	Rorug05G0198200 Rorug05G0255000 Rorug05G0428300
rosa_samantha	Rh2BG339100 Rh2BG613700 Rh2CG365300 Rh5BG509200 Rh5DG521900 Rh6AG198000 Rh6BG265900 Rh6CG023900 Rh6DG023800 Rh7DG045500
rosa_wichuraiana	Rw0G014170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	5, 58, 78, 169
AfiI	CCNNNNNNNGG	1 cut(s)	89
AjnI	CCWGG	1 cut(s)	198
AluBI	AGCT	1 cut(s)	38
AluI	AGCT	1 cut(s)	38
Alw26I	GTCTC	1 cut(s)	37
AlwNI	CAGNNNCTG	1 cut(s)	231
AoxI	GGCC	1 cut(s)	220
ApeKI	GCWGC	2 cut(s)	71, 193
AspLEI	GCGC	1 cut(s)	198
BbvI	GCAGC	2 cut(s)	83, 205
BccI	CCATC	2 cut(s)	168, 222
BciT130I	CCWGG	1 cut(s)	200
BcoDI	GTCTC	1 cut(s)	37
BfmI	CTRYAG	1 cut(s)	27
BfoI	RGCGCY	1 cut(s)	199
BglII	AGATCT	1 cut(s)	23
BisI	GCNGC	3 cut(s)	6, 72, 194
BlsI	GCNGC	3 cut(s)	7, 73, 195
Bme1390I	CCNGG	1 cut(s)	200
BmrFI	CCNGG	1 cut(s)	200
BsaJI	CCNNGG	1 cut(s)	130
Bsc4I	CCNNNNNNNGG	1 cut(s)	89
BseBI	CCWGG	1 cut(s)	200
BseDI	CCNNGG	1 cut(s)	130
BseGI	GGATG	2 cut(s)	141, 160
BseLI	CCNNNNNNNGG	1 cut(s)	89
BseMII	CTCAG	2 cut(s)	34, 48
BseXI	GCAGC	2 cut(s)	83, 205
BshFI	GGCC	1 cut(s)	222
BslFI	GGGAC	1 cut(s)	112
BslI	CCNNNNNNNGG	1 cut(s)	89
BsmAI	GTCTC	1 cut(s)	37
BsmFI	GGGAC	1 cut(s)	112
BsnI	GGCC	1 cut(s)	222
Bsp143I	GATC	2 cut(s)	23, 45
BspACI	CCGC	4 cut(s)	5, 58, 78, 169
BspANI	GGCC	1 cut(s)	222
BspCNI	CTCAG	2 cut(s)	33, 47
BssECI	CCNNGG	1 cut(s)	130
BssMI	GATC	2 cut(s)	23, 45
BssT1I	CCWWGG	1 cut(s)	130
Bst2UI	CCWGG	1 cut(s)	200
Bst4CI	ACNGT	2 cut(s)	31, 126
BstDEI	CTNAG	2 cut(s)	20, 34
BstF5I	GGATG	2 cut(s)	141, 160
BstH2I	RGCGCY	1 cut(s)	199
BstHHI	GCGC	1 cut(s)	198
BstKTI	GATC	2 cut(s)	26, 48
BstMAI	GTCTC	1 cut(s)	37
BstMBI	GATC	2 cut(s)	23, 45
BstMWI	GCNNNNNNNGC	2 cut(s)	77, 202
BstNI	CCWGG	1 cut(s)	200
BstSCI	CCNGG	1 cut(s)	198
BstSFI	CTRYAG	1 cut(s)	27
BstV1I	GCAGC	2 cut(s)	83, 205
BstX2I	RGATCY	1 cut(s)	23
BstYI	RGATCY	1 cut(s)	23
BsuRI	GGCC	1 cut(s)	222
BtsCI	GGATG	2 cut(s)	141, 160
BtsIMutI	CAGTG	1 cut(s)	229
CaiI	CAGNNNCTG	1 cut(s)	231
CfoI	GCGC	1 cut(s)	198
CseI	GACGC	3 cut(s)	63, 89, 194
CviAII	CATG	1 cut(s)	146
CviJI	RGCY	5 cut(s)	8, 38, 53, 222, 228
CviKI_1	RGCY	5 cut(s)	8, 38, 53, 222, 228
DdeI	CTNAG	2 cut(s)	20, 34
DpnI	GATC	2 cut(s)	25, 47
DpnII	GATC	2 cut(s)	23, 45
EciI	GGCGGA	1 cut(s)	67
Eco130I	CCWWGG	1 cut(s)	130
EcoRII	CCWGG	1 cut(s)	198
EcoT14I	CCWWGG	1 cut(s)	130
ErhI	CCWWGG	1 cut(s)	130
FaeI	CATG	1 cut(s)	149
FaiI	YATR	2 cut(s)	147, 191
FaqI	GGGAC	1 cut(s)	112
FatI	CATG	1 cut(s)	145
FauI	CCCGC	2 cut(s)	65, 162
Fnu4HI	GCNGC	3 cut(s)	6, 72, 194
FokI	GGATG	2 cut(s)	128, 147
Fsp4HI	GCNGC	3 cut(s)	6, 72, 194
GlaI	GCGC	1 cut(s)	197
GluI	GCNGC	3 cut(s)	6, 72, 194
HaeII	RGCGCY	1 cut(s)	199
HaeIII	GGCC	1 cut(s)	222
HgaI	GACGC	3 cut(s)	63, 89, 194
HhaI	GCGC	1 cut(s)	198
Hin1II	CATG	1 cut(s)	149
Hin6I	GCGC	1 cut(s)	196
HinP1I	GCGC	1 cut(s)	196
Hpy188I	TCNGA	2 cut(s)	23, 121
Hpy99I	CGWCG	1 cut(s)	105
HpyCH4III	ACNGT	2 cut(s)	31, 126
HpyCH4V	TGCA	2 cut(s)	137, 193
HpyF10VI	GCNNNNNNNGC	2 cut(s)	77, 202
HpyF3I	CTNAG	2 cut(s)	20, 34
Hsp92II	CATG	1 cut(s)	149
HspAI	GCGC	1 cut(s)	196
Kzo9I	GATC	2 cut(s)	23, 45
LmnI	GCTCC	2 cut(s)	43, 202
LpnPI	CCDG	2 cut(s)	185, 212
Lsp1109I	GCAGC	2 cut(s)	83, 205
MalI	GATC	2 cut(s)	25, 47
MboI	GATC	2 cut(s)	23, 45
MboII	GAAGA	1 cut(s)	3
MflI	RGATCY	1 cut(s)	23
MmeI	TCCRAC	1 cut(s)	233
MnlI	CCTC	1 cut(s)	64
MseI	TTAA	1 cut(s)	87
MspR9I	CCNGG	1 cut(s)	200
MvaI	CCWGG	1 cut(s)	200
MwoI	GCNNNNNNNGC	2 cut(s)	77, 202
NdeII	GATC	2 cut(s)	23, 45
NlaIII	CATG	1 cut(s)	149
PkrI	GCNGC	3 cut(s)	7, 73, 195
Psp6I	CCWGG	1 cut(s)	198
PspGI	CCWGG	1 cut(s)	198
PstNI	CAGNNNCTG	1 cut(s)	231
PsuI	RGATCY	1 cut(s)	23
SaqAI	TTAA	1 cut(s)	87
SatI	GCNGC	3 cut(s)	6, 72, 194
Sau3AI	GATC	2 cut(s)	23, 45
ScrFI	CCNGG	1 cut(s)	200
SetI	ASST	2 cut(s)	40, 136
SfcI	CTRYAG	1 cut(s)	27
SsiI	CCGC	4 cut(s)	5, 58, 78, 169
StyD4I	CCNGG	1 cut(s)	198
StyI	CCWWGG	1 cut(s)	130
TaaI	ACNGT	2 cut(s)	31, 126
TaqI	TCGA	1 cut(s)	48
TauI	GCSGC	1 cut(s)	8
Tru1I	TTAA	1 cut(s)	87
Tru9I	TTAA	1 cut(s)	87
TseI	GCWGC	2 cut(s)	71, 193
TspGWI	ACGGA	1 cut(s)	30

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.