Rorug05G0198200

Abscisic acid receptor

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Reverse (-)
19650130 .. 19650444
315 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0198200.1

Sequence Viewer

Length: 315 bp
ATGTCCCCCTCCCCCCACCCCCGCAGTGTATTCTATGGTTTCATTAATAGTTATGGCTTACGAGCAGCCGTTTGGCCCTCCCTAAATAATAATAATAATAATAATAATAAATTGCATTCTTTCTCCACCCTTTGTCATCATTATTTGAGGGCTTTCAACTTGGTGTCTCTTAGACACATTTTTCGTGAAGTAAATGATGTCACCAATAGGCTTGCGCACCTTGTTAGGTCATCGAGTTTAGATGAGTTTTGGATTGGTGATACTCCTGATATTATTCAGGATGTTCTTATTGAGGATGGATGTATTTTATCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

104

Amino Acids

11.91

Weight (kDa)

6.57

Isoelectric Point (pI)

63.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 216
AciI CCGC 1 cut(s) 22
AgsI TTSAA 1 cut(s) 157
Alw26I GTCTC 1 cut(s) 171
AoxI GGCC 1 cut(s) 74
ApeKI GCWGC 1 cut(s) 65
ArsI GACNNNNNNTTYG 2 cut(s) 165, 197
AseI ATTAAT 1 cut(s) 45
AspLEI GCGC 1 cut(s) 217
AspS9I GGNCC 1 cut(s) 75
AsuHPI GGTGA 2 cut(s) 193, 269
BbvI GCAGC 1 cut(s) 77
BccI CCATC 1 cut(s) 290
BceAI ACGGC 1 cut(s) 53
BcoDI GTCTC 1 cut(s) 171
BisI GCNGC 1 cut(s) 66
BlsI GCNGC 1 cut(s) 67
BmgT120I GGNCC 1 cut(s) 75
BseGI GGATG 3 cut(s) 286, 301, 305
BseXI GCAGC 1 cut(s) 77
BshFI GGCC 1 cut(s) 76
BsmAI GTCTC 1 cut(s) 171
BsmI GAATGC 1 cut(s) 115
BsnI GGCC 1 cut(s) 76
BspACI CCGC 1 cut(s) 22
BspANI GGCC 1 cut(s) 76
BstC8I GCNNGC 1 cut(s) 213
BstDEI CTNAG 1 cut(s) 170
BstF5I GGATG 3 cut(s) 286, 301, 305
BstHHI GCGC 1 cut(s) 217
BstMAI GTCTC 1 cut(s) 171
BstV1I GCAGC 1 cut(s) 77
BsuRI GGCC 1 cut(s) 76
BtsCI GGATG 3 cut(s) 286, 301, 305
BtsI GCAGTG 1 cut(s) 31
BtsIMutI CAGTG 1 cut(s) 31
Cac8I GCNNGC 1 cut(s) 213
CfoI GCGC 1 cut(s) 217
Cfr13I GGNCC 1 cut(s) 75
CviJI RGCY 5 cut(s) 57, 68, 76, 152, 211
CviKI_1 RGCY 5 cut(s) 57, 68, 76, 152, 211
DdeI CTNAG 1 cut(s) 170
FaiI YATR 2 cut(s) 36, 54
FauI CCCGC 1 cut(s) 29
Fnu4HI GCNGC 1 cut(s) 66
FokI GGATG 2 cut(s) 293, 308
Fsp4HI GCNGC 1 cut(s) 66
FspI TGCGCA 1 cut(s) 216
GlaI GCGC 1 cut(s) 216
GluI GCNGC 1 cut(s) 66
HaeIII GGCC 1 cut(s) 76
HhaI GCGC 1 cut(s) 217
Hin6I GCGC 1 cut(s) 215
HinP1I GCGC 1 cut(s) 215
HphI GGTGA 2 cut(s) 193, 269
Hpy188III TCNNGA 4 cut(s) 185, 266, 278, 312
HpyCH4V TGCA 1 cut(s) 115
HpyF3I CTNAG 1 cut(s) 170
HspAI GCGC 1 cut(s) 215
LpnPI CCDG 2 cut(s) 263, 279
Lsp1109I GCAGC 1 cut(s) 77
MaeIII GTNAC 1 cut(s) 199
MluCI AATT 1 cut(s) 110
MnlI CCTC 4 cut(s) 19, 88, 141, 286
MseI TTAA 1 cut(s) 45
Mva1269I GAATGC 1 cut(s) 115
NmuCI GTSAC 1 cut(s) 199
NsbI TGCGCA 1 cut(s) 216
PctI GAATGC 1 cut(s) 115
PkrI GCNGC 1 cut(s) 67
PshBI ATTAAT 1 cut(s) 45
PspPI GGNCC 1 cut(s) 75
SaqAI TTAA 1 cut(s) 45
SatI GCNGC 1 cut(s) 66
Sau96I GGNCC 1 cut(s) 75
SetI ASST 2 cut(s) 222, 230
SgeI CNNG 9 cut(s) 33, 74, 172, 197, 224, 233, 246, 278, 290
Sse9I AATT 1 cut(s) 110
SsiI CCGC 1 cut(s) 22
TaqI TCGA 1 cut(s) 233
TasI AATT 1 cut(s) 110
Tru1I TTAA 1 cut(s) 45
Tru9I TTAA 1 cut(s) 45
TscAI CASTG 1 cut(s) 31
TseFI GTSAC 1 cut(s) 199
TseI GCWGC 1 cut(s) 65
Tsp45I GTSAC 1 cut(s) 199
TspDTI ATGAA 1 cut(s) 31
TspRI CASTG 1 cut(s) 31
VspI ATTAAT 1 cut(s) 45
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.