Rh2CG365300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0002282
Physical Location & Seq
Reverse (-)
49591856 .. 49601425
9570 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG365300.1

Sequence Viewer

Length: 765 bp
ATGCAAAGGAGTATCTACATTGTTCTGTTGCCATTGTTCCTGATTCTGTTGTTTGGTGTCAGTTCAGTGCCCAGTTTTCATTCAGTAATGGGACCAAAACCAATGTTTAGAAGAACAAAGAGGGATACAAGTGAAGACGCAGTTGGGCAAAAAAGAACTAAATCTAATTGTATTTTGTTCGGTGGACATCAATACGATGAGGCTAGATCAAAGAAATCGAAAACAATGTCTGATGTCCAAATTGCTGAAAGATCAAATCAATATGAGAATATTGATGGATTTGAGTACTATGATGAATGGTTTAGCAATCAGAACCAAAATAATTTCTGTACGGATGACGACGGACGCTCTCCTTCAACTGTGGTTCCACGAGGGAATCAATATAGTTCAATTAACTCGAGGAGGTGGAAAACATTATCTCAACCAATAATGACAAGAGAGAATCAGGTTGGGGAAATGAGCAATCAGAATGTTTACAAAATGGAAAATCATGATCAACAAGAGGTTGTTCAGATCACAGATGAATATCAACATTCATACGGTCAAGCATCATATCAAAGAAGTAAACAAGGATCCGCTATTGCATATGAAGATTCAGGAATCACCAACAGTGAGACCTCGGTGAGAGCTCATCTTTTTGAAATCAATATCAACACAAGAGTTACAACATTTGGTAAAAAAAAGTTCTCCAGGTATCTTATTCAAGTAATTTACTATATACAAAAGTTGAGTTCCACTGTTCTACTATTCCTAAGGCAACAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

254

Amino Acids

29.48

Weight (kDa)

9.07

Isoelectric Point (pI)

50.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 576
AclWI GGATC 2 cut(s) 567, 580
AfaI GTAC 2 cut(s) 287, 331
AgsI TTSAA 4 cut(s) 357, 390, 641, 704
AjnI CCWGG 1 cut(s) 689
AjuI GAANNNNNNNTTGG 2 cut(s) 126, 158
AluBI AGCT 1 cut(s) 629
AluI AGCT 1 cut(s) 629
Alw21I GWGCWC 1 cut(s) 631
Alw26I GTCTC 1 cut(s) 608
AlwI GGATC 2 cut(s) 567, 580
Ama87I CYCGRG 1 cut(s) 397
ArsI GACNNNNNNTTYG 2 cut(s) 212, 244
AspS9I GGNCC 1 cut(s) 92
AsuHPI GGTGA 2 cut(s) 595, 634
AvaI CYCGRG 1 cut(s) 397
AvaII GGWCC 1 cut(s) 92
AxyI CCTNAGG 1 cut(s) 752
BaeGI GKGCMC 1 cut(s) 72
BamHI GGATCC 1 cut(s) 572
BanII GRGCYC 1 cut(s) 631
BauI CACGAG 1 cut(s) 369
BbsI GAAGAC 1 cut(s) 141
Bbv12I GWGCWC 1 cut(s) 631
BccI CCATC 1 cut(s) 269
BciT130I CCWGG 1 cut(s) 691
BciVI GTATCC 1 cut(s) 118
BclI TGATCA 1 cut(s) 493
BcoDI GTCTC 1 cut(s) 608
BfaI CTAG 1 cut(s) 204
BfuI GTATCC 1 cut(s) 118
BmcAI AGTACT 1 cut(s) 287
Bme1390I CCNGG 1 cut(s) 691
Bme18I GGWCC 1 cut(s) 92
BmeT110I CYCGRG 1 cut(s) 397
BmgT120I GGNCC 1 cut(s) 92
BmiI GGNNCC 3 cut(s) 93, 366, 574
BmrFI CCNGG 1 cut(s) 691
BmrI ACTGGG 1 cut(s) 66
BmsI GCATC 1 cut(s) 557
BmuI ACTGGG 1 cut(s) 66
BpiI GAAGAC 1 cut(s) 141
BpmI CTGGAG 1 cut(s) 673
BsaBI GATNNNNATC 1 cut(s) 525
BsaI GGTCTC 1 cut(s) 608
BsaJI CCNNGG 1 cut(s) 618
Bse1I ACTGG 1 cut(s) 72
Bse21I CCTNAGG 1 cut(s) 752
Bse8I GATNNNNATC 1 cut(s) 525
BseBI CCWGG 1 cut(s) 691
BseDI CCNNGG 1 cut(s) 618
BseGI GGATG 1 cut(s) 340
BseJI GATNNNNATC 1 cut(s) 525
BseNI ACTGG 1 cut(s) 72
BseRI GAGGAG 1 cut(s) 415
BseSI GKGCMC 1 cut(s) 72
BsiHKAI GWGCWC 1 cut(s) 631
BsiHKCI CYCGRG 1 cut(s) 397
BslFI GGGAC 1 cut(s) 105
BsmAI GTCTC 1 cut(s) 608
BsmFI GGGAC 1 cut(s) 105
Bso31I GGTCTC 1 cut(s) 608
BsoBI CYCGRG 1 cut(s) 397
Bsp1286I GDGCHC 2 cut(s) 72, 631
Bsp143I GATC 5 cut(s) 206, 251, 493, 513, 572
BspACI CCGC 1 cut(s) 576
BspHI TCATGA 1 cut(s) 490
BspLI GGNNCC 3 cut(s) 93, 366, 574
BspPI GGATC 2 cut(s) 567, 580
BspTNI GGTCTC 1 cut(s) 608
BsrI ACTGG 1 cut(s) 72
BssECI CCNNGG 1 cut(s) 618
BssMI GATC 5 cut(s) 206, 251, 493, 513, 572
BssSI CACGAG 1 cut(s) 369
Bst2BI CACGAG 1 cut(s) 369
Bst2UI CCWGG 1 cut(s) 691
Bst4CI ACNGT 5 cut(s) 361, 542, 611, 739, 762
BstDEI CTNAG 1 cut(s) 752
BstF5I GGATG 1 cut(s) 340
BstKTI GATC 5 cut(s) 209, 254, 496, 516, 575
BstMAI GTCTC 1 cut(s) 608
BstMBI GATC 5 cut(s) 206, 251, 493, 513, 572
BstNI CCWGG 1 cut(s) 691
BstSCI CCNGG 1 cut(s) 689
BstSLI GKGCMC 1 cut(s) 72
BstV2I GAAGAC 1 cut(s) 141
BstX2I RGATCY 1 cut(s) 572
BstYI RGATCY 1 cut(s) 572
Bsu36I CCTNAGG 1 cut(s) 752
BsuI GTATCC 1 cut(s) 118
BtsCI GGATG 1 cut(s) 340
BtsIMutI CAGTG 3 cut(s) 72, 616, 735
CciI TCATGA 1 cut(s) 490
Cfr13I GGNCC 1 cut(s) 92
CseI GACGC 2 cut(s) 146, 354
Csp6I GTAC 2 cut(s) 286, 330
CviAII CATG 1 cut(s) 491
CviJI RGCY 2 cut(s) 203, 629
CviKI_1 RGCY 2 cut(s) 203, 629
CviQI GTAC 2 cut(s) 286, 330
DdeI CTNAG 1 cut(s) 752
DpnI GATC 5 cut(s) 208, 253, 495, 515, 574
DpnII GATC 5 cut(s) 206, 251, 493, 513, 572
Ecl136II GAGCTC 1 cut(s) 629
Eco24I GRGCYC 1 cut(s) 631
Eco31I GGTCTC 1 cut(s) 608
Eco47I GGWCC 1 cut(s) 92
Eco53kI GAGCTC 1 cut(s) 629
Eco81I CCTNAGG 1 cut(s) 752
Eco88I CYCGRG 1 cut(s) 397
EcoICRI GAGCTC 1 cut(s) 629
EcoRII CCWGG 1 cut(s) 689
EcoT38I GRGCYC 1 cut(s) 631
FaeI CATG 1 cut(s) 494
FaqI GGGAC 1 cut(s) 105
FatI CATG 1 cut(s) 490
FauNDI CATATG 1 cut(s) 586
FbaI TGATCA 1 cut(s) 493
FokI GGATG 1 cut(s) 347
FriOI GRGCYC 1 cut(s) 631
FspBI CTAG 1 cut(s) 204
GsuI CTGGAG 1 cut(s) 673
HgaI GACGC 2 cut(s) 146, 354
Hin1II CATG 1 cut(s) 494
HinfI GANTC 5 cut(s) 43, 376, 442, 593, 600
HphI GGTGA 2 cut(s) 595, 634
Hpy166II GTNNAC 3 cut(s) 185, 475, 566
Hpy188I TCNGA 4 cut(s) 232, 312, 468, 513
Hpy188III TCNNGA 3 cut(s) 40, 491, 597
Hpy8I GTNNAC 3 cut(s) 185, 475, 566
Hpy99I CGWCG 1 cut(s) 344
HpyAV CCTTC 1 cut(s) 363
HpyCH4III ACNGT 5 cut(s) 361, 542, 611, 739, 762
HpyCH4V TGCA 2 cut(s) 4, 584
HpyF3I CTNAG 1 cut(s) 752
Hsp92II CATG 1 cut(s) 494
Ksp22I TGATCA 1 cut(s) 493
Kzo9I GATC 5 cut(s) 206, 251, 493, 513, 572
LpnPI CCDG 6 cut(s) 53, 85, 431, 582, 676, 703
LweI GCATC 1 cut(s) 557
MaeI CTAG 1 cut(s) 204
MaeIII GTNAC 1 cut(s) 661
MalI GATC 5 cut(s) 208, 253, 495, 515, 574
MboI GATC 5 cut(s) 206, 251, 493, 513, 572
MboII GAAGA 3 cut(s) 123, 146, 602
MflI RGATCY 1 cut(s) 572
MhlI GDGCHC 2 cut(s) 72, 631
MluCI AATT 5 cut(s) 166, 240, 322, 390, 708
MnlI CCTC 7 cut(s) 114, 193, 365, 393, 396, 496, 628
MseI TTAA 1 cut(s) 393
MspR9I CCNGG 1 cut(s) 691
MvaI CCWGG 1 cut(s) 691
NdeI CATATG 1 cut(s) 586
NdeII GATC 5 cut(s) 206, 251, 493, 513, 572
NlaIII CATG 1 cut(s) 494
NlaIV GGNNCC 3 cut(s) 93, 366, 574
PaeR7I CTCGAG 1 cut(s) 397
PagI TCATGA 1 cut(s) 490
PfeI GAWTC 5 cut(s) 43, 376, 442, 593, 600
Psp124BI GAGCTC 1 cut(s) 631
Psp6I CCWGG 1 cut(s) 689
PspGI CCWGG 1 cut(s) 689
PspN4I GGNNCC 3 cut(s) 93, 366, 574
PspPI GGNCC 1 cut(s) 92
PspXI VCTCGAGB 1 cut(s) 397
PsuI RGATCY 1 cut(s) 572
RsaI GTAC 2 cut(s) 287, 331
RsaNI GTAC 2 cut(s) 286, 330
SacI GAGCTC 1 cut(s) 631
SaqAI TTAA 1 cut(s) 393
Sau3AI GATC 5 cut(s) 206, 251, 493, 513, 572
Sau96I GGNCC 1 cut(s) 92
ScaI AGTACT 1 cut(s) 287
ScrFI CCNGG 1 cut(s) 691
SduI GDGCHC 2 cut(s) 72, 631
SetI ASST 6 cut(s) 407, 450, 507, 620, 631, 695
SfaNI GCATC 1 cut(s) 557
Sfr274I CTCGAG 1 cut(s) 397
SinI GGWCC 1 cut(s) 92
SlaI CTCGAG 1 cut(s) 397
SmlI CTYRAG 1 cut(s) 397
SmoI CTYRAG 1 cut(s) 397
Sse9I AATT 5 cut(s) 166, 240, 322, 390, 708
SsiI CCGC 1 cut(s) 576
SspI AATATT 1 cut(s) 271
SspMI CTAG 1 cut(s) 204
SstI GAGCTC 1 cut(s) 631
StyD4I CCNGG 1 cut(s) 689
TaaI ACNGT 5 cut(s) 361, 542, 611, 739, 762
TaqI TCGA 2 cut(s) 218, 398
TasI AATT 5 cut(s) 166, 240, 322, 390, 708
TatI WGTACW 1 cut(s) 285
TfiI GAWTC 5 cut(s) 43, 376, 442, 593, 600
Tru1I TTAA 1 cut(s) 393
Tru9I TTAA 1 cut(s) 393
TscAI CASTG 3 cut(s) 72, 616, 742
TspDTI ATGAA 5 cut(s) 68, 309, 525, 537, 603
TspGWI ACGGA 2 cut(s) 347, 357
TspRI CASTG 3 cut(s) 72, 616, 742
VpaK11BI GGWCC 1 cut(s) 92
XhoI CTCGAG 1 cut(s) 397
XspI CTAG 1 cut(s) 204
ZrmI AGTACT 1 cut(s) 287
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.