Rh7DG045500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0002282
Physical Location & Seq
Reverse (-)
3452948 .. 3453184
237 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG045500.1

Sequence Viewer

Length: 237 bp
ATGTCGTTCAGCGTCTTGGTCCAGATCCAGAGGCGGCGAGCTGACGAGAACAACGTCGTTGAGCTCATTGCTGGAGCAGCAAGAGGAAGTAGGCGGAAAGTGCTCCTCCGCCGGAACTGGAGATTGGAGAGAGAGAGGGAGAAACCAGATGGCACTTGGACTGAGTTCGACGAGTACGCCGACGCTGAAGGGGAGAGATCTGGTGAGGTTGTCGGAATTCGATACGAAGCATCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

78

Amino Acids

9.08

Weight (kDa)

6.31

Isoelectric Point (pI)

44.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 34, 94, 109
AclWI GGATC 1 cut(s) 19
AcsI RAATTY 1 cut(s) 216
AcuI CTGAAG 1 cut(s) 207
AfaI GTAC 1 cut(s) 176
AjuI GAANNNNNNNTTGG 2 cut(s) 107, 139
AluBI AGCT 2 cut(s) 41, 64
AluI AGCT 2 cut(s) 41, 64
Alw21I GWGCWC 2 cut(s) 66, 105
AlwI GGATC 1 cut(s) 19
ApeKI GCWGC 1 cut(s) 77
ApoI RAATTY 1 cut(s) 216
AspS9I GGNCC 1 cut(s) 19
AsuHPI GGTGA 1 cut(s) 215
AvaII GGWCC 1 cut(s) 19
BanII GRGCYC 1 cut(s) 66
Bbv12I GWGCWC 2 cut(s) 66, 105
BbvI GCAGC 1 cut(s) 89
BccI CCATC 1 cut(s) 143
BglII AGATCT 1 cut(s) 197
BisI GCNGC 2 cut(s) 35, 78
BlsI GCNGC 2 cut(s) 36, 79
Bme18I GGWCC 1 cut(s) 19
BmgT120I GGNCC 1 cut(s) 19
BpmI CTGGAG 2 cut(s) 93, 139
Bse1I ACTGG 1 cut(s) 122
Bse3DI GCAATG 1 cut(s) 66
BseGI GGATG 1 cut(s) 230
BseMI GCAATG 1 cut(s) 66
BseMII CTCAG 1 cut(s) 153
BseNI ACTGG 1 cut(s) 122
BseRI GAGGAG 1 cut(s) 95
BseXI GCAGC 1 cut(s) 89
BsiHKAI GWGCWC 2 cut(s) 66, 105
BsiSI CCGG 1 cut(s) 112
Bsp1286I GDGCHC 2 cut(s) 66, 105
Bsp143I GATC 2 cut(s) 24, 197
BspACI CCGC 3 cut(s) 34, 94, 109
BspCNI CTCAG 1 cut(s) 154
BspPI GGATC 1 cut(s) 19
BsrDI GCAATG 1 cut(s) 66
BsrI ACTGG 1 cut(s) 122
BssMI GATC 2 cut(s) 24, 197
BstC8I GCNNGC 1 cut(s) 39
BstDEI CTNAG 1 cut(s) 162
BstF5I GGATG 1 cut(s) 230
BstKTI GATC 2 cut(s) 27, 200
BstMBI GATC 2 cut(s) 24, 197
BstMWI GCNNNNNNNGC 2 cut(s) 77, 100
BstV1I GCAGC 1 cut(s) 89
BstX2I RGATCY 2 cut(s) 24, 197
BstYI RGATCY 2 cut(s) 24, 197
BtsCI GGATG 1 cut(s) 230
Cac8I GCNNGC 1 cut(s) 39
Cfr13I GGNCC 1 cut(s) 19
CseI GACGC 1 cut(s) 191
Csp6I GTAC 1 cut(s) 175
CviJI RGCY 2 cut(s) 41, 64
CviKI_1 RGCY 2 cut(s) 41, 64
CviQI GTAC 1 cut(s) 175
DdeI CTNAG 1 cut(s) 162
DpnI GATC 2 cut(s) 26, 199
DpnII GATC 2 cut(s) 24, 197
EciI GGCGGA 2 cut(s) 98, 109
Ecl136II GAGCTC 1 cut(s) 64
Eco24I GRGCYC 1 cut(s) 66
Eco47I GGWCC 1 cut(s) 19
Eco53kI GAGCTC 1 cut(s) 64
Eco57I CTGAAG 1 cut(s) 207
EcoICRI GAGCTC 1 cut(s) 64
EcoRI GAATTC 1 cut(s) 216
EcoT38I GRGCYC 1 cut(s) 66
Fnu4HI GCNGC 2 cut(s) 35, 78
FokI GGATG 1 cut(s) 217
FriOI GRGCYC 1 cut(s) 66
Fsp4HI GCNGC 2 cut(s) 35, 78
GluI GCNGC 2 cut(s) 35, 78
GsuI CTGGAG 2 cut(s) 93, 139
HapII CCGG 1 cut(s) 112
HgaI GACGC 1 cut(s) 191
HpaII CCGG 1 cut(s) 112
HphI GGTGA 1 cut(s) 215
Hpy188I TCNGA 1 cut(s) 215
Hpy188III TCNNGA 3 cut(s) 22, 28, 234
Hpy99I CGWCG 3 cut(s) 59, 173, 185
HpyAV CCTTC 1 cut(s) 182
HpyCH4IV ACGT 1 cut(s) 54
HpyF10VI GCNNNNNNNGC 2 cut(s) 77, 100
HpyF3I CTNAG 1 cut(s) 162
HpySE526I ACGT 1 cut(s) 54
Kzo9I GATC 2 cut(s) 24, 197
LmnI GCTCC 2 cut(s) 74, 108
LpnPI CCDG 7 cut(s) 35, 41, 57, 103, 125, 159, 186
Lsp1109I GCAGC 1 cut(s) 89
MaeII ACGT 1 cut(s) 54
MalI GATC 2 cut(s) 26, 199
MboI GATC 2 cut(s) 24, 197
MflI RGATCY 2 cut(s) 24, 197
MhlI GDGCHC 2 cut(s) 66, 105
MluCI AATT 1 cut(s) 216
MmeI TCCRAC 1 cut(s) 193
MnlI CCTC 5 cut(s) 24, 77, 116, 129, 199
MspI CCGG 1 cut(s) 112
MwoI GCNNNNNNNGC 2 cut(s) 77, 100
NdeII GATC 2 cut(s) 24, 197
PcsI WCGNNNNNNNCGW 2 cut(s) 51, 177
PkrI GCNGC 2 cut(s) 36, 79
Psp124BI GAGCTC 1 cut(s) 66
PspPI GGNCC 1 cut(s) 19
PsuI RGATCY 2 cut(s) 24, 197
RsaI GTAC 1 cut(s) 176
RsaNI GTAC 1 cut(s) 175
SacI GAGCTC 1 cut(s) 66
SatI GCNGC 2 cut(s) 35, 78
Sau3AI GATC 2 cut(s) 24, 197
Sau96I GGNCC 1 cut(s) 19
SduI GDGCHC 2 cut(s) 66, 105
SetI ASST 4 cut(s) 43, 57, 66, 210
SinI GGWCC 1 cut(s) 19
Sse9I AATT 1 cut(s) 216
SsiI CCGC 3 cut(s) 34, 94, 109
SstI GAGCTC 1 cut(s) 66
TaiI ACGT 1 cut(s) 57
TaqI TCGA 2 cut(s) 168, 220
TasI AATT 1 cut(s) 216
TauI GCSGC 1 cut(s) 37
TseI GCWGC 1 cut(s) 77
VpaK11BI GGWCC 1 cut(s) 19
XapI RAATTY 1 cut(s) 216
XcmI CCANNNNNNNNNTGG 1 cut(s) 153
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.