Rmu_sc0003941.1_g000003

Abscisic acid receptor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003941.1
OG0002282
Physical Location & Seq
Reverse (-)
13406 .. 16229
2824 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003941.1_g000003.1.cds

Sequence Viewer

Length: 498 bp
atgcctcgaattacccaagctagaggtggcaaacgagccactaagcatgagcacggcacggccccggcacgcttaaaagcggttcggcacggcccaagctcgttagtggcccggcacgacccgagagatcgctgctcccatctctactgtgtggtcggtggtccggtccggcgcttcgacaacccccaagcctacaagtacttcgtcaaaagctgccgcatcatcgttggggacggcagcgtcagcaccctccgcgaggtccaagtcatctcggggcttctggccaacatcagtacggaaaggttagacatgctggatgaggagagccatgtcgtcaacttcagcctcgtgggcgatgaccacaacctggacatctggcgaggtttcctggcgatctttgtccgaagtccggcgaccgttaaccaaagtccggagacagtgaacggattccggccatctttgtttgaagtccggcgaccagtgaccggagcccggtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04016 ko04075 map04016 map04075
Pfam Domains
Protein Families
Polyketide_cyc2

Protein Analysis

165

Amino Acids

18.37

Weight (kDa)

10.02

Isoelectric Point (pI)

48.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 239
AccB7I CCANNNNNTGG 1 cut(s) 367
AccII CGCG 1 cut(s) 255
AccIII TCCGGA 1 cut(s) 430
AciI CCGC 3 cut(s) 80, 217, 253
AcoI YGGCCR 2 cut(s) 282, 452
AcuI CTGAAG 1 cut(s) 325
AfaI GTAC 2 cut(s) 200, 295
AfiI CCNNNNNNNGG 6 cut(s) 256, 367, 409, 430, 485, 492
AgsI TTSAA 1 cut(s) 467
AjnI CCWGG 2 cut(s) 366, 387
AluBI AGCT 3 cut(s) 20, 99, 213
AluI AGCT 3 cut(s) 20, 99, 213
Alw21I GWGCWC 1 cut(s) 54
Alw26I GTCTC 1 cut(s) 428
Ama87I CYCGRG 2 cut(s) 121, 271
Aor13HI TCCGGA 1 cut(s) 430
AoxI GGCC 5 cut(s) 60, 91, 108, 282, 452
ApeKI GCWGC 3 cut(s) 132, 213, 237
Asp700I GAANNNNTTC 1 cut(s) 446
AspLEI GCGC 1 cut(s) 174
AspS9I GGNCC 6 cut(s) 61, 92, 109, 161, 166, 259
AsuC2I CCSGG 3 cut(s) 65, 112, 493
AvaI CYCGRG 2 cut(s) 121, 271
AvaII GGWCC 3 cut(s) 161, 166, 259
BalI TGGCCA 1 cut(s) 284
BanII GRGCYC 1 cut(s) 493
BauI CACGAG 1 cut(s) 347
Bbv12I GWGCWC 1 cut(s) 54
BbvI GCAGC 3 cut(s) 119, 200, 249
BccI CCATC 2 cut(s) 147, 463
BceAI ACGGC 4 cut(s) 70, 75, 106, 250
BciT130I CCWGG 2 cut(s) 368, 389
BcnI CCSGG 3 cut(s) 65, 112, 493
BcoDI GTCTC 1 cut(s) 428
BfaI CTAG 1 cut(s) 21
BfoI RGCGCY 1 cut(s) 175
BglI GCCNNNNNGGC 1 cut(s) 351
BisI GCNGC 4 cut(s) 133, 214, 217, 238
BlsI GCNGC 4 cut(s) 134, 215, 218, 239
BmcAI AGTACT 1 cut(s) 200
Bme1390I CCNGG 5 cut(s) 65, 112, 368, 389, 493
Bme18I GGWCC 3 cut(s) 161, 166, 259
BmeT110I CYCGRG 2 cut(s) 121, 271
BmgT120I GGNCC 6 cut(s) 61, 92, 109, 161, 166, 259
BmiI GGNNCC 2 cut(s) 63, 490
BmrFI CCNGG 5 cut(s) 65, 112, 368, 389, 493
BmsI GCATC 1 cut(s) 228
BpuMI CCSGG 3 cut(s) 65, 112, 493
BsaJI CCNNGG 1 cut(s) 63
BsaWI WCCGGW 3 cut(s) 163, 430, 485
Bsc4I CCNNNNNNNGG 6 cut(s) 256, 367, 409, 430, 485, 492
Bse1I ACTGG 1 cut(s) 479
BseAI TCCGGA 1 cut(s) 430
BseBI CCWGG 2 cut(s) 368, 389
BseDI CCNNGG 1 cut(s) 63
BseGI GGATG 1 cut(s) 322
BseLI CCNNNNNNNGG 6 cut(s) 256, 367, 409, 430, 485, 492
BseNI ACTGG 1 cut(s) 479
BseRI GAGGAG 1 cut(s) 335
BseXI GCAGC 3 cut(s) 119, 200, 249
Bsh1236I CGCG 1 cut(s) 255
Bsh1285I CGRYCG 1 cut(s) 417
BshFI GGCC 5 cut(s) 62, 93, 110, 284, 454
BsiEI CGRYCG 1 cut(s) 417
BsiHKAI GWGCWC 1 cut(s) 54
BsiHKCI CYCGRG 2 cut(s) 121, 271
BslFI GGGAC 1 cut(s) 245
BslI CCNNNNNNNGG 6 cut(s) 256, 367, 409, 430, 485, 492
BsmAI GTCTC 1 cut(s) 428
BsmFI GGGAC 1 cut(s) 245
BsnI GGCC 5 cut(s) 62, 93, 110, 284, 454
BsoBI CYCGRG 2 cut(s) 121, 271
Bsp1286I GDGCHC 2 cut(s) 54, 493
Bsp13I TCCGGA 1 cut(s) 430
Bsp143I GATC 2 cut(s) 127, 393
BspACI CCGC 3 cut(s) 80, 217, 253
BspANI GGCC 5 cut(s) 62, 93, 110, 284, 454
BspEI TCCGGA 1 cut(s) 430
BspFNI CGCG 1 cut(s) 255
BspLI GGNNCC 2 cut(s) 63, 490
BsrI ACTGG 1 cut(s) 479
BssECI CCNNGG 1 cut(s) 63
BssMI GATC 2 cut(s) 127, 393
BssSI CACGAG 1 cut(s) 347
Bst2BI CACGAG 1 cut(s) 347
Bst2UI CCWGG 2 cut(s) 368, 389
Bst4CI ACNGT 3 cut(s) 149, 418, 439
BstC8I GCNNGC 1 cut(s) 70
BstDEI CTNAG 1 cut(s) 42
BstENI CCTNNNNNAGG 1 cut(s) 254
BstF5I GGATG 1 cut(s) 322
BstFNI CGCG 1 cut(s) 255
BstH2I RGCGCY 1 cut(s) 175
BstHHI GCGC 1 cut(s) 174
BstKTI GATC 2 cut(s) 130, 396
BstMAI GTCTC 1 cut(s) 428
BstMBI GATC 2 cut(s) 127, 393
BstMCI CGRYCG 1 cut(s) 417
BstMWI GCNNNNNNNGC 3 cut(s) 243, 252, 351
BstNI CCWGG 2 cut(s) 368, 389
BstNSI RCATGY 1 cut(s) 313
BstSCI CCNGG 5 cut(s) 63, 110, 366, 387, 491
BstUI CGCG 1 cut(s) 255
BstV1I GCAGC 3 cut(s) 119, 200, 249
BsuRI GGCC 5 cut(s) 62, 93, 110, 284, 454
BtgZI GCGATG 1 cut(s) 369
BtsCI GGATG 1 cut(s) 322
BtsIMutI CAGTG 2 cut(s) 444, 486
Cac8I GCNNGC 1 cut(s) 70
CfoI GCGC 1 cut(s) 174
Cfr13I GGNCC 6 cut(s) 61, 92, 109, 161, 166, 259
CpoI CGGWCCG 1 cut(s) 166
CseI GACGC 1 cut(s) 229
Csp6I GTAC 2 cut(s) 199, 294
CspI CGGWCCG 1 cut(s) 166
CviAII CATG 3 cut(s) 47, 310, 329
CviQI GTAC 2 cut(s) 199, 294
DdeI CTNAG 1 cut(s) 42
DpnI GATC 2 cut(s) 129, 395
DpnII GATC 2 cut(s) 127, 393
DrdI GACNNNNNNGTC 1 cut(s) 239
DseDI GACNNNNNNGTC 1 cut(s) 239
EaeI YGGCCR 2 cut(s) 282, 452
Eco24I GRGCYC 1 cut(s) 493
Eco47I GGWCC 3 cut(s) 161, 166, 259
Eco57I CTGAAG 1 cut(s) 325
Eco88I CYCGRG 2 cut(s) 121, 271
EcoNI CCTNNNNNAGG 1 cut(s) 254
EcoRII CCWGG 2 cut(s) 366, 387
EcoT38I GRGCYC 1 cut(s) 493
FaeI CATG 3 cut(s) 50, 313, 332
FaiI YATR 3 cut(s) 48, 311, 330
FaqI GGGAC 1 cut(s) 245
FatI CATG 3 cut(s) 46, 309, 328
Fnu4HI GCNGC 4 cut(s) 133, 214, 217, 238
FokI GGATG 1 cut(s) 329
FriOI GRGCYC 1 cut(s) 493
Fsp4HI GCNGC 4 cut(s) 133, 214, 217, 238
FspBI CTAG 1 cut(s) 21
GlaI GCGC 1 cut(s) 173
GluI GCNGC 4 cut(s) 133, 214, 217, 238
HaeII RGCGCY 1 cut(s) 175
HaeIII GGCC 5 cut(s) 62, 93, 110, 284, 454
HgaI GACGC 1 cut(s) 229
HhaI GCGC 1 cut(s) 174
Hin1II CATG 3 cut(s) 50, 313, 332
Hin6I GCGC 1 cut(s) 172
HinP1I GCGC 1 cut(s) 172
HincII GTYRAC 2 cut(s) 337, 421
HindII GTYRAC 2 cut(s) 337, 421
HinfI GANTC 1 cut(s) 447
HpaI GTTAAC 1 cut(s) 421
Hpy166II GTNNAC 3 cut(s) 337, 421, 442
Hpy188I TCNGA 1 cut(s) 404
Hpy188III TCNNGA 1 cut(s) 431
Hpy8I GTNNAC 3 cut(s) 337, 421, 442
HpyCH4III ACNGT 3 cut(s) 149, 418, 439
HpyF10VI GCNNNNNNNGC 3 cut(s) 243, 252, 351
HpyF3I CTNAG 1 cut(s) 42
Hsp92II CATG 3 cut(s) 50, 313, 332
HspAI GCGC 1 cut(s) 172
Kpn2I TCCGGA 1 cut(s) 430
KspAI GTTAAC 1 cut(s) 421
Kzo9I GATC 2 cut(s) 127, 393
LmnI GCTCC 2 cut(s) 140, 488
Lsp1109I GCAGC 3 cut(s) 119, 200, 249
LweI GCATC 1 cut(s) 228
MaeI CTAG 1 cut(s) 21
MaeIII GTNAC 1 cut(s) 481
MalI GATC 2 cut(s) 129, 395
MboI GATC 2 cut(s) 127, 393
MhlI GDGCHC 2 cut(s) 54, 493
MlsI TGGCCA 1 cut(s) 284
MluCI AATT 1 cut(s) 9
MluNI TGGCCA 1 cut(s) 284
MnlI CCTC 7 cut(s) 15, 17, 250, 260, 313, 356, 374
Mox20I TGGCCA 1 cut(s) 284
MroI TCCGGA 1 cut(s) 430
MroXI GAANNNNTTC 1 cut(s) 446
MscI TGGCCA 1 cut(s) 284
MseI TTAA 2 cut(s) 74, 420
Msp20I TGGCCA 1 cut(s) 284
MspR9I CCNGG 5 cut(s) 65, 112, 368, 389, 493
MvaI CCWGG 2 cut(s) 368, 389
MvnI CGCG 1 cut(s) 255
MwoI GCNNNNNNNGC 3 cut(s) 243, 252, 351
NciI CCSGG 3 cut(s) 65, 112, 493
NdeII GATC 2 cut(s) 127, 393
NlaIII CATG 3 cut(s) 50, 313, 332
NlaIV GGNNCC 2 cut(s) 63, 490
NmuCI GTSAC 1 cut(s) 481
NspI RCATGY 1 cut(s) 313
PdmI GAANNNNTTC 1 cut(s) 446
PfeI GAWTC 1 cut(s) 447
PflMI CCANNNNNTGG 1 cut(s) 367
PkrI GCNGC 4 cut(s) 134, 215, 218, 239
Psp6I CCWGG 2 cut(s) 366, 387
PspGI CCWGG 2 cut(s) 366, 387
PspN4I GGNNCC 2 cut(s) 63, 490
PspPI GGNCC 6 cut(s) 61, 92, 109, 161, 166, 259
RsaI GTAC 2 cut(s) 200, 295
RsaNI GTAC 2 cut(s) 199, 294
Rsr2I CGGWCCG 1 cut(s) 166
RsrII CGGWCCG 1 cut(s) 166
SaqAI TTAA 2 cut(s) 74, 420
SatI GCNGC 4 cut(s) 133, 214, 217, 238
Sau3AI GATC 2 cut(s) 127, 393
Sau96I GGNCC 6 cut(s) 61, 92, 109, 161, 166, 259
ScaI AGTACT 1 cut(s) 200
ScrFI CCNGG 5 cut(s) 65, 112, 368, 389, 493
SduI GDGCHC 2 cut(s) 54, 493
SetI ASST 8 cut(s) 22, 28, 101, 215, 261, 305, 369, 385
SfaNI GCATC 1 cut(s) 228
SinI GGWCC 3 cut(s) 161, 166, 259
Sse9I AATT 1 cut(s) 9
SsiI CCGC 3 cut(s) 80, 217, 253
SspMI CTAG 1 cut(s) 21
StyD4I CCNGG 5 cut(s) 63, 110, 366, 387, 491
TaaI ACNGT 3 cut(s) 149, 418, 439
TaqI TCGA 2 cut(s) 7, 177
TasI AATT 1 cut(s) 9
TatI WGTACW 1 cut(s) 198
TauI GCSGC 1 cut(s) 219
TfiI GAWTC 1 cut(s) 447
Tru1I TTAA 2 cut(s) 74, 420
Tru9I TTAA 2 cut(s) 74, 420
TscAI CASTG 2 cut(s) 444, 486
TseFI GTSAC 1 cut(s) 481
TseI GCWGC 3 cut(s) 132, 213, 237
Tsp45I GTSAC 1 cut(s) 481
TspGWI ACGGA 2 cut(s) 311, 459
TspRI CASTG 2 cut(s) 444, 486
Van91I CCANNNNNTGG 1 cut(s) 367
VpaK11BI GGWCC 3 cut(s) 161, 166, 259
XagI CCTNNNNNAGG 1 cut(s) 254
XceI RCATGY 1 cut(s) 313
XcmI CCANNNNNNNNNTGG 1 cut(s) 23
XmnI GAANNNNTTC 1 cut(s) 446
XspI CTAG 1 cut(s) 21
ZrmI AGTACT 1 cut(s) 200
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.