Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0018337.1

Orthogroup ID

OG0002282

Physical Location & Seq

Genomic Coordinates Reverse (-)

39777 .. 40362

Gene Structure 586 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0018337.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

atggttcaggataattctcaatggttaattggttctggagatgagatttatttttggcgggataattttatgggtaggccaattaatgactattttggtgctaatgtggtgatgcaagataacccggatttggtgtcaaagtatatagacaatggctcatgggttcttcctccgttgctgcaaattcatttaccaacattatgtgatgtgattaatcaagttcccattgcgtcagatccttcaacaaatgacaaacttatatggacttcttcagattcaggtgggccccgcggcatggttagccccgcctatgacatgcatccggtagaccgacacccgagctacgttgccatggtggaggtcggccggtatctagtcgggaggctactctcccatgctctccaaaaggcttcaagagaagcaatatgtgtattatgtaccacatcggaaatgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 RVT_3 zf-RVT

Protein Analysis

151

Amino Acids

16.87

Weight (kDa)

4.8

Isoelectric Point (pI)

37.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002282)

Species	Orthologous Gene IDs
pyrus_communis	pycom10g17910
rosa_chinensis	RchiOBHm_Chr2g0127881 RchiOBHm_Chr2g0128071 RchiOBHm_Chr2g0168141 RchiOBHm_Chr4g0394061 RchiOBHm_Chr4g0409481 RchiOBHm_Chr5g0057941 RchiOBHm_Chr6g0289331
rosa_multiflora	Rmu_sc0001136.1_g000034 Rmu_sc0002501.1_g000016 Rmu_sc0003941.1_g000003 Rmu_sc0012303.1_g000002 Rmu_sc0018337.1_g000005 Rmu_sc0023137.1_g000011 Rmu_sc0037818.1_g000001 Rmu_ssc0000118.1_g000006
rosa_roxburghii	Rroxscaffold_177G00434380 Rroxscaffold_1G00074020 Rroxscaffold_2G00119630 Rroxscaffold_4G00297870 Rroxscaffold_4G00303680 Rroxscaffold_4G00311340 Rroxscaffold_5G00333250 Rroxscaffold_5G00333260 Rroxscaffold_5G00365770 Rroxscaffold_5G00382860 Rroxscaffold_6G00423070 Rroxscaffold_7G00193890 Rroxscaffold_7G00201810
rosa_rugosa	Rorug05G0198200 Rorug05G0255000 Rorug05G0428300
rosa_samantha	Rh2BG339100 Rh2BG613700 Rh2CG365300 Rh5BG509200 Rh5DG521900 Rh6AG198000 Rh6BG265900 Rh6CG023900 Rh6DG023800 Rh7DG045500
rosa_wichuraiana	Rw0G014170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	327
AccII	CGCG	1 cut(s)	291
AciI	CCGC	4 cut(s)	58, 289, 291, 306
AclWI	GGATC	1 cut(s)	230
AcoI	YGGCCR	1 cut(s)	364
AcsI	RAATTY	1 cut(s)	183
AcuI	CTGAAG	1 cut(s)	255
AfaI	GTAC	1 cut(s)	439
AfiI	CCNNNNNNNGG	2 cut(s)	130, 295
AgsI	TTSAA	2 cut(s)	243, 414
AluBI	AGCT	1 cut(s)	342
AluI	AGCT	1 cut(s)	342
AlwI	GGATC	1 cut(s)	230
Ama87I	CYCGRG	1 cut(s)	337
AoxI	GGCC	3 cut(s)	77, 284, 364
ApaI	GGGCCC	1 cut(s)	288
ApeKI	GCWGC	1 cut(s)	178
ApoI	RAATTY	1 cut(s)	183
AseI	ATTAAT	2 cut(s)	84, 213
AspS9I	GGNCC	2 cut(s)	284, 285
AsuC2I	CCSGG	1 cut(s)	125
AsuHPI	GGTGA	1 cut(s)	121
AvaI	CYCGRG	1 cut(s)	337
BaeGI	GKGCMC	1 cut(s)	288
BanII	GRGCYC	1 cut(s)	288
BbvI	GCAGC	1 cut(s)	165
BcnI	CCSGG	1 cut(s)	125
BfaI	CTAG	1 cut(s)	374
BisI	GCNGC	2 cut(s)	179, 292
BlsI	GCNGC	2 cut(s)	180, 293
Bme1390I	CCNGG	1 cut(s)	125
BmeT110I	CYCGRG	1 cut(s)	337
BmgT120I	GGNCC	2 cut(s)	284, 285
BmiI	GGNNCC	2 cut(s)	286, 287
BmrFI	CCNGG	1 cut(s)	125
BmsI	GCATC	2 cut(s)	102, 328
BpmI	CTGGAG	1 cut(s)	57
BpuMI	CCSGG	1 cut(s)	125
BsaJI	CCNNGG	2 cut(s)	289, 351
BsaWI	WCCGGW	1 cut(s)	322
Bsc4I	CCNNNNNNNGG	2 cut(s)	130, 295
Bse118I	RCCGGY	1 cut(s)	366
Bse3DI	GCAATG	1 cut(s)	225
BseDI	CCNNGG	2 cut(s)	289, 351
BseGI	GGATG	1 cut(s)	319
BseLI	CCNNNNNNNGG	2 cut(s)	130, 295
BseMI	GCAATG	1 cut(s)	225
BseSI	GKGCMC	1 cut(s)	288
BseX3I	CGGCCG	1 cut(s)	364
BseXI	GCAGC	1 cut(s)	165
Bsh1236I	CGCG	1 cut(s)	291
Bsh1285I	CGRYCG	1 cut(s)	367
BshFI	GGCC	3 cut(s)	79, 286, 366
BsiEI	CGRYCG	1 cut(s)	367
BsiHKCI	CYCGRG	1 cut(s)	337
BsiSI	CCGG	3 cut(s)	125, 323, 367
BslI	CCNNNNNNNGG	2 cut(s)	130, 295
BsnI	GGCC	3 cut(s)	79, 286, 366
BsoBI	CYCGRG	1 cut(s)	337
Bsp120I	GGGCCC	1 cut(s)	284
Bsp1286I	GDGCHC	1 cut(s)	288
Bsp143I	GATC	1 cut(s)	235
Bsp19I	CCATGG	1 cut(s)	351
BspACI	CCGC	4 cut(s)	58, 289, 291, 306
BspANI	GGCC	3 cut(s)	79, 286, 366
BspFNI	CGCG	1 cut(s)	291
BspLI	GGNNCC	2 cut(s)	286, 287
BspPI	GGATC	1 cut(s)	230
BsrDI	GCAATG	1 cut(s)	225
BsrFI	RCCGGY	1 cut(s)	366
BssAI	RCCGGY	1 cut(s)	366
BssECI	CCNNGG	2 cut(s)	289, 351
BssMI	GATC	1 cut(s)	235
BssT1I	CCWWGG	1 cut(s)	351
BstDSI	CCRYGG	2 cut(s)	289, 351
BstF5I	GGATG	1 cut(s)	319
BstFNI	CGCG	1 cut(s)	291
BstKTI	GATC	1 cut(s)	238
BstMBI	GATC	1 cut(s)	235
BstMCI	CGRYCG	1 cut(s)	367
BstMWI	GCNNNNNNNGC	1 cut(s)	300
BstNSI	RCATGY	1 cut(s)	319
BstSCI	CCNGG	1 cut(s)	123
BstSLI	GKGCMC	1 cut(s)	288
BstUI	CGCG	1 cut(s)	291
BstV1I	GCAGC	1 cut(s)	165
BstX2I	RGATCY	1 cut(s)	235
BstYI	RGATCY	1 cut(s)	235
BstZI	CGGCCG	1 cut(s)	364
BsuRI	GGCC	3 cut(s)	79, 286, 366
BtgI	CCRYGG	2 cut(s)	289, 351
BtsCI	GGATG	1 cut(s)	319
Cfr10I	RCCGGY	1 cut(s)	366
Cfr13I	GGNCC	2 cut(s)	284, 285
Cfr42I	CCGCGG	1 cut(s)	292
CseI	GACGC	1 cut(s)	219
Csp6I	GTAC	1 cut(s)	438
CviAII	CATG	5 cut(s)	159, 295, 316, 352, 395
CviJI	RGCY	8 cut(s)	79, 156, 286, 303, 342, 366, 385, 410
CviKI_1	RGCY	8 cut(s)	79, 156, 286, 303, 342, 366, 385, 410
CviQI	GTAC	1 cut(s)	438
DpnI	GATC	1 cut(s)	237
DpnII	GATC	1 cut(s)	235
EaeI	YGGCCR	1 cut(s)	364
EagI	CGGCCG	1 cut(s)	364
EclXI	CGGCCG	1 cut(s)	364
Eco130I	CCWWGG	1 cut(s)	351
Eco24I	GRGCYC	1 cut(s)	288
Eco52I	CGGCCG	1 cut(s)	364
Eco57I	CTGAAG	1 cut(s)	255
Eco88I	CYCGRG	1 cut(s)	337
EcoO109I	RGGNCCY	1 cut(s)	285
EcoT14I	CCWWGG	1 cut(s)	351
EcoT22I	ATGCAT	1 cut(s)	321
EcoT38I	GRGCYC	1 cut(s)	288
ErhI	CCWWGG	1 cut(s)	351
FaeI	CATG	5 cut(s)	162, 298, 319, 355, 398
FatI	CATG	5 cut(s)	158, 294, 315, 351, 394
FauI	CCCGC	3 cut(s)	51, 296, 313
FblI	GTMKAC	1 cut(s)	327
Fnu4HI	GCNGC	2 cut(s)	179, 292
FokI	GGATG	1 cut(s)	306
FriOI	GRGCYC	1 cut(s)	288
Fsp4HI	GCNGC	2 cut(s)	179, 292
FspBI	CTAG	1 cut(s)	374
GluI	GCNGC	2 cut(s)	179, 292
GsuI	CTGGAG	1 cut(s)	57
HaeIII	GGCC	3 cut(s)	79, 286, 366
HapII	CCGG	3 cut(s)	125, 323, 367
HgaI	GACGC	1 cut(s)	219
Hin1II	CATG	5 cut(s)	162, 298, 319, 355, 398
HinfI	GANTC	1 cut(s)	275
HpaII	CCGG	3 cut(s)	125, 323, 367
HphI	GGTGA	1 cut(s)	121
Hpy166II	GTNNAC	1 cut(s)	328
Hpy188I	TCNGA	3 cut(s)	235, 274, 448
Hpy188III	TCNNGA	4 cut(s)	8, 36, 379, 414
Hpy8I	GTNNAC	1 cut(s)	328
HpyAV	CCTTC	1 cut(s)	249
HpyCH4IV	ACGT	1 cut(s)	345
HpyCH4V	TGCA	3 cut(s)	115, 181, 319
HpyF10VI	GCNNNNNNNGC	1 cut(s)	300
HpySE526I	ACGT	1 cut(s)	345
Hsp92II	CATG	5 cut(s)	162, 298, 319, 355, 398
KspI	CCGCGG	1 cut(s)	292
Kzo9I	GATC	1 cut(s)	235
LpnPI	CCDG	5 cut(s)	21, 138, 264, 336, 380
Lsp1109I	GCAGC	1 cut(s)	165
LweI	GCATC	2 cut(s)	102, 328
MaeI	CTAG	1 cut(s)	374
MaeII	ACGT	1 cut(s)	345
MalI	GATC	1 cut(s)	237
MboI	GATC	1 cut(s)	235
MboII	GAAGA	2 cut(s)	158, 261
MflI	RGATCY	1 cut(s)	235
MhlI	GDGCHC	1 cut(s)	288
MluCI	AATT	5 cut(s)	13, 27, 64, 81, 183
MnlI	CCTC	3 cut(s)	180, 352, 375
Mph1103I	ATGCAT	1 cut(s)	321
MseI	TTAA	3 cut(s)	26, 84, 213
MspA1I	CMGCKG	1 cut(s)	291
MspI	CCGG	3 cut(s)	125, 323, 367
MspR9I	CCNGG	1 cut(s)	125
MvnI	CGCG	1 cut(s)	291
MwoI	GCNNNNNNNGC	1 cut(s)	300
NciI	CCSGG	1 cut(s)	125
NcoI	CCATGG	1 cut(s)	351
NdeII	GATC	1 cut(s)	235
NlaIII	CATG	5 cut(s)	162, 298, 319, 355, 398
NlaIV	GGNNCC	2 cut(s)	286, 287
NsiI	ATGCAT	1 cut(s)	321
NspI	RCATGY	1 cut(s)	319
PfeI	GAWTC	1 cut(s)	275
PkrI	GCNGC	2 cut(s)	180, 293
PshBI	ATTAAT	2 cut(s)	84, 213
PspN4I	GGNNCC	2 cut(s)	286, 287
PspOMI	GGGCCC	1 cut(s)	284
PspPI	GGNCC	2 cut(s)	284, 285
PsuI	RGATCY	1 cut(s)	235
RsaI	GTAC	1 cut(s)	439
RsaNI	GTAC	1 cut(s)	438
SacII	CCGCGG	1 cut(s)	292
SaqAI	TTAA	3 cut(s)	26, 84, 213
SatI	GCNGC	2 cut(s)	179, 292
Sau3AI	GATC	1 cut(s)	235
Sau96I	GGNCC	2 cut(s)	284, 285
ScrFI	CCNGG	1 cut(s)	125
SduI	GDGCHC	1 cut(s)	288
SetI	ASST	4 cut(s)	283, 344, 348, 363
SfaNI	GCATC	2 cut(s)	102, 328
Sfr303I	CCGCGG	1 cut(s)	292
SgrBI	CCGCGG	1 cut(s)	292
Sse9I	AATT	5 cut(s)	13, 27, 64, 81, 183
SsiI	CCGC	4 cut(s)	58, 289, 291, 306
SspMI	CTAG	1 cut(s)	374
StyD4I	CCNGG	1 cut(s)	123
StyI	CCWWGG	1 cut(s)	351
TaiI	ACGT	1 cut(s)	348
TaqII	GACCGA	1 cut(s)	345
TasI	AATT	5 cut(s)	13, 27, 64, 81, 183
TauI	GCSGC	1 cut(s)	294
TfiI	GAWTC	1 cut(s)	275
Tru1I	TTAA	3 cut(s)	26, 84, 213
Tru9I	TTAA	3 cut(s)	26, 84, 213
TseI	GCWGC	1 cut(s)	178
TspDTI	ATGAA	1 cut(s)	176
TspGWI	ACGGA	1 cut(s)	162
VspI	ATTAAT	2 cut(s)	84, 213
XapI	RAATTY	1 cut(s)	183
XceI	RCATGY	1 cut(s)	319
XmiI	GTMKAC	1 cut(s)	327
XspI	CTAG	1 cut(s)	374
Zsp2I	ATGCAT	1 cut(s)	321

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.