Rroxscaffold_5G00333250

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0002282
Physical Location & Seq
Reverse (-)
681559 .. 683313
1755 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00333250.1

Sequence Viewer

Length: 267 bp
ATGGTGGGTCCCGCCTACGACATGCATCCGGTAGTCCGACACCCATGCTACCTCGCTATGGTGGAGGTCGGCCGGTACCTCGTAGGGAGGTCATCCTCCCATGCTCTCCAGAGGCTTCAAGAGAAGCAATATGTTAAACAACAACTCTGTAATCGATCACCAAAGAGAGCTCTAGCAATCCCCAACCACATATCAACCTCCAAGGGAGTACTGCAATCCCTTGACAAGATGGCACAGTTCTATTTAGGTCAATACCATCGCCGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

88

Amino Acids

10.14

Weight (kDa)

10.09

Isoelectric Point (pI)

85.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 75
AccB1I GGYRCC 1 cut(s) 75
AciI CCGC 1 cut(s) 12
AcoI YGGCCR 1 cut(s) 70
AfaI GTAC 2 cut(s) 77, 210
AfiI CCNNNNNNNGG 1 cut(s) 58
AgsI TTSAA 1 cut(s) 119
AluBI AGCT 1 cut(s) 170
AluI AGCT 1 cut(s) 170
Alw21I GWGCWC 1 cut(s) 172
AoxI GGCC 1 cut(s) 70
Asp718I GGTACC 1 cut(s) 75
AspS9I GGNCC 1 cut(s) 8
AsuHPI GGTGA 1 cut(s) 150
AvaII GGWCC 1 cut(s) 8
BanI GGYRCC 1 cut(s) 75
BanII GRGCYC 1 cut(s) 172
Bbv12I GWGCWC 1 cut(s) 172
BccI CCATC 2 cut(s) 223, 264
BcgI CGANNNNNNTGC 2 cut(s) 27, 61
BfaI CTAG 1 cut(s) 173
BmcAI AGTACT 1 cut(s) 210
Bme18I GGWCC 1 cut(s) 8
BmgT120I GGNCC 1 cut(s) 8
BmiI GGNNCC 3 cut(s) 9, 10, 77
BmsI GCATC 1 cut(s) 34
BpmI CTGGAG 1 cut(s) 92
Bsa29I ATCGAT 1 cut(s) 154
BsaJI CCNNGG 1 cut(s) 201
BsaWI WCCGGW 1 cut(s) 28
Bsc4I CCNNNNNNNGG 1 cut(s) 58
Bse118I RCCGGY 2 cut(s) 72, 261
BseCI ATCGAT 1 cut(s) 154
BseDI CCNNGG 1 cut(s) 201
BseGI GGATG 2 cut(s) 25, 92
BseLI CCNNNNNNNGG 1 cut(s) 58
BseX3I CGGCCG 1 cut(s) 70
Bsh1285I CGRYCG 1 cut(s) 73
BshFI GGCC 1 cut(s) 72
BshNI GGYRCC 1 cut(s) 75
BshVI ATCGAT 1 cut(s) 154
BsiEI CGRYCG 1 cut(s) 73
BsiHKAI GWGCWC 1 cut(s) 172
BsiSI CCGG 3 cut(s) 29, 73, 262
BslI CCNNNNNNNGG 1 cut(s) 58
BsnI GGCC 1 cut(s) 72
Bsp1286I GDGCHC 1 cut(s) 172
Bsp143I GATC 1 cut(s) 155
BspACI CCGC 1 cut(s) 12
BspANI GGCC 1 cut(s) 72
BspDI ATCGAT 1 cut(s) 154
BspLI GGNNCC 3 cut(s) 9, 10, 77
BspT107I GGYRCC 1 cut(s) 75
BsrFI RCCGGY 2 cut(s) 72, 261
BssAI RCCGGY 2 cut(s) 72, 261
BssECI CCNNGG 1 cut(s) 201
BssMI GATC 1 cut(s) 155
BssT1I CCWWGG 1 cut(s) 201
Bst4CI ACNGT 1 cut(s) 237
BstF5I GGATG 2 cut(s) 25, 92
BstKTI GATC 1 cut(s) 158
BstMBI GATC 1 cut(s) 155
BstMCI CGRYCG 1 cut(s) 73
BstNSI RCATGY 1 cut(s) 25
BstZI CGGCCG 1 cut(s) 70
Bsu15I ATCGAT 1 cut(s) 154
BsuRI GGCC 1 cut(s) 72
BsuTUI ATCGAT 1 cut(s) 154
BtgZI GCGATG 1 cut(s) 242
BtsCI GGATG 2 cut(s) 25, 92
Cfr10I RCCGGY 2 cut(s) 72, 261
Cfr13I GGNCC 1 cut(s) 8
ClaI ATCGAT 1 cut(s) 154
Csp6I GTAC 2 cut(s) 76, 209
CviAII CATG 3 cut(s) 22, 45, 101
CviJI RGCY 3 cut(s) 72, 115, 170
CviKI_1 RGCY 3 cut(s) 72, 115, 170
CviQI GTAC 2 cut(s) 76, 209
DpnI GATC 1 cut(s) 157
DpnII GATC 1 cut(s) 155
EaeI YGGCCR 1 cut(s) 70
EagI CGGCCG 1 cut(s) 70
Ecl136II GAGCTC 1 cut(s) 170
EclXI CGGCCG 1 cut(s) 70
Eco130I CCWWGG 1 cut(s) 201
Eco24I GRGCYC 1 cut(s) 172
Eco47I GGWCC 1 cut(s) 8
Eco52I CGGCCG 1 cut(s) 70
Eco53kI GAGCTC 1 cut(s) 170
EcoICRI GAGCTC 1 cut(s) 170
EcoO109I RGGNCCY 1 cut(s) 8
EcoT14I CCWWGG 1 cut(s) 201
EcoT22I ATGCAT 1 cut(s) 27
EcoT38I GRGCYC 1 cut(s) 172
ErhI CCWWGG 1 cut(s) 201
FaeI CATG 3 cut(s) 25, 48, 104
FaiI YATR 6 cut(s) 23, 46, 59, 102, 132, 191
FatI CATG 3 cut(s) 21, 44, 100
FauI CCCGC 1 cut(s) 19
FokI GGATG 2 cut(s) 12, 79
FriOI GRGCYC 1 cut(s) 172
FspBI CTAG 1 cut(s) 173
GsuI CTGGAG 1 cut(s) 92
HaeIII GGCC 1 cut(s) 72
HapII CCGG 3 cut(s) 29, 73, 262
Hin1II CATG 3 cut(s) 25, 48, 104
HpaII CCGG 3 cut(s) 29, 73, 262
HphI GGTGA 1 cut(s) 150
Hpy188I TCNGA 1 cut(s) 38
Hpy188III TCNNGA 2 cut(s) 109, 119
HpyCH4III ACNGT 1 cut(s) 237
HpyCH4V TGCA 2 cut(s) 25, 214
Hsp92II CATG 3 cut(s) 25, 48, 104
KflI GGGWCCC 1 cut(s) 8
KpnI GGTACC 1 cut(s) 79
Kzo9I GATC 1 cut(s) 155
LpnPI CCDG 3 cut(s) 42, 86, 122
LweI GCATC 1 cut(s) 34
MaeI CTAG 1 cut(s) 173
MalI GATC 1 cut(s) 157
MboI GATC 1 cut(s) 155
MhlI GDGCHC 1 cut(s) 172
MmeI TCCRAC 1 cut(s) 61
MnlI CCTC 7 cut(s) 58, 62, 81, 89, 105, 106, 208
Mph1103I ATGCAT 1 cut(s) 27
MseI TTAA 1 cut(s) 135
MspI CCGG 3 cut(s) 29, 73, 262
NdeII GATC 1 cut(s) 155
NlaIII CATG 3 cut(s) 25, 48, 104
NlaIV GGNNCC 3 cut(s) 9, 10, 77
NsiI ATGCAT 1 cut(s) 27
NspI RCATGY 1 cut(s) 25
PpuMI RGGWCCY 1 cut(s) 8
Psp124BI GAGCTC 1 cut(s) 172
Psp5II RGGWCCY 1 cut(s) 8
PspN4I GGNNCC 3 cut(s) 9, 10, 77
PspPI GGNCC 1 cut(s) 8
PspPPI RGGWCCY 1 cut(s) 8
RsaI GTAC 2 cut(s) 77, 210
RsaNI GTAC 2 cut(s) 76, 209
SacI GAGCTC 1 cut(s) 172
SaqAI TTAA 1 cut(s) 135
Sau3AI GATC 1 cut(s) 155
Sau96I GGNCC 1 cut(s) 8
ScaI AGTACT 1 cut(s) 210
SduI GDGCHC 1 cut(s) 172
SetI ASST 7 cut(s) 54, 69, 81, 92, 172, 200, 250
SfaNI GCATC 1 cut(s) 34
SgrAI CRCCGGYG 1 cut(s) 261
SinI GGWCC 1 cut(s) 8
SsiI CCGC 1 cut(s) 12
SspMI CTAG 1 cut(s) 173
SstI GAGCTC 1 cut(s) 172
StyI CCWWGG 1 cut(s) 201
TaaI ACNGT 1 cut(s) 237
TaqI TCGA 1 cut(s) 154
TatI WGTACW 1 cut(s) 208
Tru1I TTAA 1 cut(s) 135
Tru9I TTAA 1 cut(s) 135
VpaK11BI GGWCC 1 cut(s) 8
XceI RCATGY 1 cut(s) 25
XspI CTAG 1 cut(s) 173
ZrmI AGTACT 1 cut(s) 210
Zsp2I ATGCAT 1 cut(s) 27
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.