Rw0G014170

No description available

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00634
Physical Location & Seq
Reverse (-)
25199 .. 27002
1804 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G014170.1

Sequence Viewer

Length: 342 bp
ATGTTTTGTCGTCTTTCATCGGTTATGGATTTATGTTTTGTGCTCTCTGCTACTTTGTGTTTTTTTTTTGTTTTACTGGAGAATAGTTTTTCGGTGTATGTTTTAGTAGTGGAGTTGAGTTTTGATGGCTTTGTATGGCTCTTCGATTGCTGGTTGGTTTCTGATATGAAATCACTACTCACTGAATCAGTAAATGATAGTTTTTTTGTTTTTGTTTTTGGTGATTTAGGTGTCAAGTGCTGGGTATGGTCGCAATCTGAACTGTTCAAAGGTGCAATCATCCATCTTTGGGGCTTCTATCTCAACCTGGTCGTCTTCTTTACATTTCAGCATATGCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

113

Amino Acids

13.23

Weight (kDa)

4.41

Isoelectric Point (pI)

33.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfiI CCNNNNNNNGG 1 cut(s) 289
AgsI TTSAA 1 cut(s) 268
AjnI CCWGG 1 cut(s) 306
Alw21I GWGCWC 1 cut(s) 45
AsuHPI GGTGA 1 cut(s) 233
BbsI GAAGAC 1 cut(s) 307
Bbv12I GWGCWC 1 cut(s) 45
BccI CCATC 2 cut(s) 119, 291
BciT130I CCWGG 1 cut(s) 308
Bme1390I CCNGG 1 cut(s) 308
BmrFI CCNGG 1 cut(s) 308
BpiI GAAGAC 1 cut(s) 307
BpmI CTGGAG 1 cut(s) 98
Bsc4I CCNNNNNNNGG 1 cut(s) 289
Bse1I ACTGG 1 cut(s) 81
BseBI CCWGG 1 cut(s) 308
BseGI GGATG 1 cut(s) 279
BseLI CCNNNNNNNGG 1 cut(s) 289
BseNI ACTGG 1 cut(s) 81
BseYI CCCAGC 1 cut(s) 240
BsiHKAI GWGCWC 1 cut(s) 45
BslI CCNNNNNNNGG 1 cut(s) 289
Bsp1286I GDGCHC 1 cut(s) 45
BspQI GCTCTTC 1 cut(s) 146
BsrI ACTGG 1 cut(s) 81
Bst2UI CCWGG 1 cut(s) 308
Bst4CI ACNGT 1 cut(s) 264
Bst6I CTCTTC 1 cut(s) 146
BstF5I GGATG 1 cut(s) 279
BstNI CCWGG 1 cut(s) 308
BstSCI CCNGG 1 cut(s) 306
BstV2I GAAGAC 1 cut(s) 307
BtsCI GGATG 1 cut(s) 279
BtsIMutI CAGTG 1 cut(s) 180
CsiI ACCWGGT 1 cut(s) 306
CviJI RGCY 3 cut(s) 129, 139, 294
CviKI_1 RGCY 3 cut(s) 129, 139, 294
Eam1104I CTCTTC 1 cut(s) 146
EarI CTCTTC 1 cut(s) 146
EcoRII CCWGG 1 cut(s) 306
FaiI YATR 8 cut(s) 26, 34, 99, 136, 167, 247, 333, 335
FauNDI CATATG 1 cut(s) 333
FokI GGATG 1 cut(s) 266
GsaI CCCAGC 1 cut(s) 244
GsuI CTGGAG 1 cut(s) 98
HinfI GANTC 1 cut(s) 185
HphI GGTGA 1 cut(s) 233
Hpy188I TCNGA 2 cut(s) 163, 259
HpyCH4III ACNGT 1 cut(s) 264
HpyCH4V TGCA 2 cut(s) 275, 337
LguI GCTCTTC 1 cut(s) 146
LpnPI CCDG 5 cut(s) 62, 136, 226, 293, 320
MabI ACCWGGT 1 cut(s) 306
MboII GAAGA 2 cut(s) 133, 307
MhlI GDGCHC 1 cut(s) 45
MspR9I CCNGG 1 cut(s) 308
MvaI CCWGG 1 cut(s) 308
NdeI CATATG 1 cut(s) 333
PciSI GCTCTTC 1 cut(s) 146
PfeI GAWTC 1 cut(s) 185
Psp6I CCWGG 1 cut(s) 306
PspFI CCCAGC 1 cut(s) 240
PspGI CCWGG 1 cut(s) 306
SapI GCTCTTC 1 cut(s) 146
ScrFI CCNGG 1 cut(s) 308
SduI GDGCHC 1 cut(s) 45
SetI ASST 3 cut(s) 232, 274, 309
SexAI ACCWGGT 1 cut(s) 306
SgeI CNNG 6 cut(s) 89, 163, 247, 253, 319, 320
StyD4I CCNGG 1 cut(s) 306
TaaI ACNGT 1 cut(s) 264
TaqI TCGA 1 cut(s) 144
TfiI GAWTC 1 cut(s) 185
TscAI CASTG 1 cut(s) 187
TspDTI ATGAA 2 cut(s) 6, 182
TspRI CASTG 1 cut(s) 187
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.