RchiOBHm_Chr4g0409481

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0002282
Physical Location & Seq
Forward (+)
32882850 .. 32886131
3282 bp
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UTR
Exon/CDS
Intron
PRQ38048

Sequence Viewer

Length: 162 bp
ATGGTTAGCCCCGCCTATGACATGCATCTGGTAGACCGACACCCGAGCTACGTTGCCATGGTGGAGGTCGGCCGGTATCTAGTCGGGAGGCTACTCTCCCATGCTCTCCAAAAGGCTTTAAGAGAAGTAATATGTGTATTATGTCCCACATCGGAAATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

53

Amino Acids

5.99

Weight (kDa)

6.81

Isoelectric Point (pI)

50.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 33
AciI CCGC 1 cut(s) 12
AcoI YGGCCR 1 cut(s) 70
AluBI AGCT 1 cut(s) 48
AluI AGCT 1 cut(s) 48
Ama87I CYCGRG 1 cut(s) 43
AoxI GGCC 1 cut(s) 70
AvaI CYCGRG 1 cut(s) 43
BfaI CTAG 1 cut(s) 80
BmeT110I CYCGRG 1 cut(s) 43
BmsI GCATC 1 cut(s) 34
BsaJI CCNNGG 1 cut(s) 57
Bse118I RCCGGY 1 cut(s) 72
BseDI CCNNGG 1 cut(s) 57
BseX3I CGGCCG 1 cut(s) 70
Bsh1285I CGRYCG 1 cut(s) 73
BshFI GGCC 1 cut(s) 72
BsiEI CGRYCG 1 cut(s) 73
BsiHKCI CYCGRG 1 cut(s) 43
BsiSI CCGG 1 cut(s) 73
BslFI GGGAC 1 cut(s) 129
BsmFI GGGAC 1 cut(s) 129
BsnI GGCC 1 cut(s) 72
BsoBI CYCGRG 1 cut(s) 43
Bsp19I CCATGG 1 cut(s) 57
BspACI CCGC 1 cut(s) 12
BspANI GGCC 1 cut(s) 72
BsrFI RCCGGY 1 cut(s) 72
BssAI RCCGGY 1 cut(s) 72
BssECI CCNNGG 1 cut(s) 57
BssT1I CCWWGG 1 cut(s) 57
BstDSI CCRYGG 1 cut(s) 57
BstMCI CGRYCG 1 cut(s) 73
BstNSI RCATGY 1 cut(s) 25
BstZI CGGCCG 1 cut(s) 70
BsuRI GGCC 1 cut(s) 72
BtgI CCRYGG 1 cut(s) 57
Cfr10I RCCGGY 1 cut(s) 72
CviAII CATG 3 cut(s) 22, 58, 101
CviJI RGCY 5 cut(s) 9, 48, 72, 91, 116
CviKI_1 RGCY 5 cut(s) 9, 48, 72, 91, 116
EaeI YGGCCR 1 cut(s) 70
EagI CGGCCG 1 cut(s) 70
EclXI CGGCCG 1 cut(s) 70
Eco130I CCWWGG 1 cut(s) 57
Eco52I CGGCCG 1 cut(s) 70
Eco88I CYCGRG 1 cut(s) 43
EcoT14I CCWWGG 1 cut(s) 57
EcoT22I ATGCAT 1 cut(s) 27
ErhI CCWWGG 1 cut(s) 57
FaeI CATG 3 cut(s) 25, 61, 104
FaiI YATR 6 cut(s) 18, 23, 59, 102, 133, 142
FaqI GGGAC 1 cut(s) 129
FatI CATG 3 cut(s) 21, 57, 100
FauI CCCGC 1 cut(s) 19
FblI GTMKAC 1 cut(s) 33
FspBI CTAG 1 cut(s) 80
HaeIII GGCC 1 cut(s) 72
HapII CCGG 1 cut(s) 73
Hin1II CATG 3 cut(s) 25, 61, 104
HpaII CCGG 1 cut(s) 73
Hpy166II GTNNAC 1 cut(s) 34
Hpy188I TCNGA 1 cut(s) 154
Hpy188III TCNNGA 1 cut(s) 85
Hpy8I GTNNAC 1 cut(s) 34
HpyCH4IV ACGT 1 cut(s) 51
HpyCH4V TGCA 1 cut(s) 25
HpySE526I ACGT 1 cut(s) 51
Hsp92II CATG 3 cut(s) 25, 61, 104
LpnPI CCDG 2 cut(s) 14, 86
LweI GCATC 1 cut(s) 34
MaeI CTAG 1 cut(s) 80
MaeII ACGT 1 cut(s) 51
MnlI CCTC 2 cut(s) 58, 81
Mph1103I ATGCAT 1 cut(s) 27
MseI TTAA 1 cut(s) 119
MspI CCGG 1 cut(s) 73
NcoI CCATGG 1 cut(s) 57
NlaIII CATG 3 cut(s) 25, 61, 104
NsiI ATGCAT 1 cut(s) 27
NspI RCATGY 1 cut(s) 25
SaqAI TTAA 1 cut(s) 119
SetI ASST 3 cut(s) 50, 54, 69
SfaNI GCATC 1 cut(s) 34
SsiI CCGC 1 cut(s) 12
SspMI CTAG 1 cut(s) 80
StyI CCWWGG 1 cut(s) 57
TaiI ACGT 1 cut(s) 54
TaqII GACCGA 1 cut(s) 51
Tru1I TTAA 1 cut(s) 119
Tru9I TTAA 1 cut(s) 119
XceI RCATGY 1 cut(s) 25
XmiI GTMKAC 1 cut(s) 33
XspI CTAG 1 cut(s) 80
Zsp2I ATGCAT 1 cut(s) 27
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.