RchiOBHm_Chr6g0289331

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0002282
Physical Location & Seq
Reverse (-)
52426254 .. 52426406
153 bp
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UTR
Exon/CDS
Intron
PRQ25956

Sequence Viewer

Length: 153 bp
ATGAGGAATGGACAACGATTGACTTATGAGGTGGTCGGGGATAGAGATTTCGGCGTCCCCGCACCAGATCCAGAAGGGCATATTGATCAAGAAGCAACACGCCCCGATCCTCGACGAGGAGGCGCGTTACCACAAGCACGGGGTGGGCCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

50

Amino Acids

5.41

Weight (kDa)

5.61

Isoelectric Point (pI)

47.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 125
AciI CCGC 1 cut(s) 60
AclWI GGATC 2 cut(s) 62, 101
AcyI GRCGYC 1 cut(s) 54
AdeI CACNNNGTG 1 cut(s) 143
AfiI CCNNNNNNNGG 1 cut(s) 116
AlwI GGATC 2 cut(s) 62, 101
AoxI GGCC 1 cut(s) 146
ApaI GGGCCC 1 cut(s) 150
AspLEI GCGC 1 cut(s) 125
AspS9I GGNCC 2 cut(s) 146, 147
BaeGI GKGCMC 1 cut(s) 150
BanII GRGCYC 1 cut(s) 150
BclI TGATCA 1 cut(s) 85
BmgT120I GGNCC 2 cut(s) 146, 147
BmiI GGNNCC 1 cut(s) 148
BsaHI GRCGYC 1 cut(s) 54
Bsc4I CCNNNNNNNGG 1 cut(s) 116
BseLI CCNNNNNNNGG 1 cut(s) 116
BseRI GAGGAG 1 cut(s) 132
BseSI GKGCMC 1 cut(s) 150
Bsh1236I CGCG 1 cut(s) 125
BshFI GGCC 1 cut(s) 148
BslFI GGGAC 1 cut(s) 41
BslI CCNNNNNNNGG 1 cut(s) 116
BsmFI GGGAC 1 cut(s) 41
BsnI GGCC 1 cut(s) 148
Bsp120I GGGCCC 1 cut(s) 146
Bsp1286I GDGCHC 1 cut(s) 150
Bsp143I GATC 3 cut(s) 67, 85, 106
BspACI CCGC 1 cut(s) 60
BspANI GGCC 1 cut(s) 148
BspFNI CGCG 1 cut(s) 125
BspLI GGNNCC 1 cut(s) 148
BspPI GGATC 2 cut(s) 62, 101
BssMI GATC 3 cut(s) 67, 85, 106
BssNI GRCGYC 1 cut(s) 54
BstACI GRCGYC 1 cut(s) 54
BstENI CCTNNNNNAGG 1 cut(s) 114
BstFNI CGCG 1 cut(s) 125
BstHHI GCGC 1 cut(s) 125
BstKTI GATC 3 cut(s) 70, 88, 109
BstMBI GATC 3 cut(s) 67, 85, 106
BstSLI GKGCMC 1 cut(s) 150
BstUI CGCG 1 cut(s) 125
BstX2I RGATCY 1 cut(s) 67
BstYI RGATCY 1 cut(s) 67
BsuRI GGCC 1 cut(s) 148
CfoI GCGC 1 cut(s) 125
Cfr13I GGNCC 2 cut(s) 146, 147
CseI GACGC 1 cut(s) 43
CviJI RGCY 1 cut(s) 148
CviKI_1 RGCY 1 cut(s) 148
DpnI GATC 3 cut(s) 69, 87, 108
DpnII GATC 3 cut(s) 67, 85, 106
DraIII CACNNNGTG 1 cut(s) 143
Eco24I GRGCYC 1 cut(s) 150
EcoNI CCTNNNNNAGG 1 cut(s) 114
EcoO109I RGGNCCY 1 cut(s) 147
EcoT38I GRGCYC 1 cut(s) 150
FaiI YATR 2 cut(s) 27, 81
FaqI GGGAC 1 cut(s) 41
FauI CCCGC 1 cut(s) 67
FbaI TGATCA 1 cut(s) 85
FriOI GRGCYC 1 cut(s) 150
GlaI GCGC 1 cut(s) 124
HaeIII GGCC 1 cut(s) 148
HgaI GACGC 1 cut(s) 43
HhaI GCGC 1 cut(s) 125
Hin1I GRCGYC 1 cut(s) 54
Hin6I GCGC 1 cut(s) 123
HinP1I GCGC 1 cut(s) 123
Hpy188III TCNNGA 2 cut(s) 71, 89
Hpy99I CGWCG 1 cut(s) 117
HpyAV CCTTC 1 cut(s) 68
Hsp92I GRCGYC 1 cut(s) 54
HspAI GCGC 1 cut(s) 123
Ksp22I TGATCA 1 cut(s) 85
Kzo9I GATC 3 cut(s) 67, 85, 106
LpnPI CCDG 2 cut(s) 78, 84
MaeIII GTNAC 1 cut(s) 126
MalI GATC 3 cut(s) 69, 87, 108
MboI GATC 3 cut(s) 67, 85, 106
MflI RGATCY 1 cut(s) 67
MhlI GDGCHC 1 cut(s) 150
MnlI CCTC 4 cut(s) 22, 110, 113, 120
MvnI CGCG 1 cut(s) 125
NdeII GATC 3 cut(s) 67, 85, 106
NlaIV GGNNCC 1 cut(s) 148
PspN4I GGNNCC 1 cut(s) 148
PspOMI GGGCCC 1 cut(s) 146
PspPI GGNCC 2 cut(s) 146, 147
PsuI RGATCY 1 cut(s) 67
Sau3AI GATC 3 cut(s) 67, 85, 106
Sau96I GGNCC 2 cut(s) 146, 147
SduI GDGCHC 1 cut(s) 150
SetI ASST 1 cut(s) 33
SsiI CCGC 1 cut(s) 60
TaqI TCGA 1 cut(s) 112
XagI CCTNNNNNAGG 1 cut(s) 114
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.