Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012303.1

Orthogroup ID

OG0002282

Physical Location & Seq

Genomic Coordinates Reverse (-)

4102 .. 4878

Gene Structure 777 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012303.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

atgccgagttcaccaccatctccgtcggacgaggaatggacggtgattggcgaggcggttggcgatggagatctcgacgtccccgcactaaaatcagaagggcatgatgatcaagaagcagcgcgccccgatcctcaactcggtggcgctgtggtcgttggtccgatccggcgcttcgacaacccccaggtctataagtacttcatcaagaggtgccacatcatcgttggagatgacgacgtcagcaccctcctcgaggtccaggtcatctcggggcttccggccgacagcagcatggagaggctggacgtggctgatgaggagagccccgtcatcagcttcaacatggttagccccgcctatggcatgcatccggtagtccgacacccgagctacctcgctatggtggaggtcggccggtacctcatagggaggccaccctcccatgatttccaagaaacttcaagagatgtaaatatgtgtattatgtcccatatcggaaatgtagaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 map04016 map04075

Pfam Domains

Protein Families

Polyketide_cyc2

Protein Analysis

170

Amino Acids

18.6

Weight (kDa)

4.52

Isoelectric Point (pI)

65.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002282)

Species	Orthologous Gene IDs
pyrus_communis	pycom10g17910
rosa_chinensis	RchiOBHm_Chr2g0127881 RchiOBHm_Chr2g0128071 RchiOBHm_Chr2g0168141 RchiOBHm_Chr4g0394061 RchiOBHm_Chr4g0409481 RchiOBHm_Chr5g0057941 RchiOBHm_Chr6g0289331
rosa_multiflora	Rmu_sc0001136.1_g000034 Rmu_sc0002501.1_g000016 Rmu_sc0003941.1_g000003 Rmu_sc0012303.1_g000002 Rmu_sc0018337.1_g000005 Rmu_sc0023137.1_g000011 Rmu_sc0037818.1_g000001 Rmu_ssc0000118.1_g000006
rosa_roxburghii	Rroxscaffold_177G00434380 Rroxscaffold_1G00074020 Rroxscaffold_2G00119630 Rroxscaffold_4G00297870 Rroxscaffold_4G00303680 Rroxscaffold_4G00311340 Rroxscaffold_5G00333250 Rroxscaffold_5G00333260 Rroxscaffold_5G00365770 Rroxscaffold_5G00382860 Rroxscaffold_6G00423070 Rroxscaffold_7G00193890 Rroxscaffold_7G00201810
rosa_rugosa	Rorug05G0198200 Rorug05G0255000 Rorug05G0428300
rosa_samantha	Rh2BG339100 Rh2BG613700 Rh2CG365300 Rh5BG509200 Rh5DG521900 Rh6AG198000 Rh6BG265900 Rh6CG023900 Rh6DG023800 Rh7DG045500
rosa_wichuraiana	Rw0G014170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	81, 243
AbsI	CCTCGAGG	1 cut(s)	254
Acc65I	GGTACC	1 cut(s)	420
AccB1I	GGYRCC	2 cut(s)	213, 420
AccII	CGCG	1 cut(s)	124
AciI	CCGC	3 cut(s)	56, 84, 357
AclWI	GGATC	2 cut(s)	125, 160
AcoI	YGGCCR	2 cut(s)	282, 415
AcyI	GRCGYC	2 cut(s)	78, 240
AfaI	GTAC	2 cut(s)	200, 422
AfiI	CCNNNNNNNGG	4 cut(s)	140, 256, 362, 403
AgsI	TTSAA	2 cut(s)	343, 465
AjiI	CACGTC	1 cut(s)	310
AjnI	CCWGG	2 cut(s)	186, 261
AluBI	AGCT	2 cut(s)	339, 393
AluI	AGCT	2 cut(s)	339, 393
AlwI	GGATC	2 cut(s)	125, 160
Ama87I	CYCGRG	3 cut(s)	254, 271, 388
AoxI	GGCC	3 cut(s)	282, 415, 434
ApeKI	GCWGC	2 cut(s)	119, 291
Asp718I	GGTACC	1 cut(s)	420
AspLEI	GCGC	4 cut(s)	124, 126, 149, 174
AspS9I	GGNCC	2 cut(s)	161, 259
AsuHPI	GGTGA	2 cut(s)	3, 55
AvaI	CYCGRG	3 cut(s)	254, 271, 388
AvaII	GGWCC	2 cut(s)	161, 259
BanI	GGYRCC	2 cut(s)	213, 420
BanII	GRGCYC	1 cut(s)	329
BbvI	GCAGC	2 cut(s)	131, 303
BccI	CCATC	2 cut(s)	25, 59
BcgI	CGANNNNNNTGC	2 cut(s)	235, 269
BciT130I	CCWGG	2 cut(s)	188, 263
BclI	TGATCA	1 cut(s)	109
BfoI	RGCGCY	2 cut(s)	150, 175
BglII	AGATCT	1 cut(s)	70
BisI	GCNGC	2 cut(s)	120, 292
BlsI	GCNGC	2 cut(s)	121, 293
BmcAI	AGTACT	1 cut(s)	200
Bme1390I	CCNGG	2 cut(s)	188, 263
Bme18I	GGWCC	2 cut(s)	161, 259
BmeT110I	CYCGRG	3 cut(s)	254, 271, 388
BmgBI	CACGTC	1 cut(s)	310
BmgT120I	GGNCC	2 cut(s)	161, 259
BmiI	GGNNCC	2 cut(s)	215, 422
BmrFI	CCNGG	2 cut(s)	188, 263
BmsI	GCATC	1 cut(s)	379
BsaBI	GATNNNNATC	1 cut(s)	69
BsaHI	GRCGYC	2 cut(s)	78, 240
BsaJI	CCNNGG	1 cut(s)	186
BsaWI	WCCGGW	1 cut(s)	373
Bsc4I	CCNNNNNNNGG	4 cut(s)	140, 256, 362, 403
Bse118I	RCCGGY	1 cut(s)	417
Bse8I	GATNNNNATC	1 cut(s)	69
BseBI	CCWGG	2 cut(s)	188, 263
BseDI	CCNNGG	1 cut(s)	186
BseGI	GGATG	1 cut(s)	370
BseJI	GATNNNNATC	1 cut(s)	69
BseLI	CCNNNNNNNGG	4 cut(s)	140, 256, 362, 403
BsePI	GCGCGC	1 cut(s)	122
BseRI	GAGGAG	2 cut(s)	242, 335
BseX3I	CGGCCG	2 cut(s)	282, 415
BseXI	GCAGC	2 cut(s)	131, 303
Bsh1236I	CGCG	1 cut(s)	124
Bsh1285I	CGRYCG	2 cut(s)	285, 418
BshFI	GGCC	3 cut(s)	284, 417, 436
BshNI	GGYRCC	2 cut(s)	213, 420
BsiEI	CGRYCG	2 cut(s)	285, 418
BsiHKCI	CYCGRG	3 cut(s)	254, 271, 388
BsiSI	CCGG	4 cut(s)	169, 281, 374, 418
BslFI	GGGAC	2 cut(s)	65, 475
BslI	CCNNNNNNNGG	4 cut(s)	140, 256, 362, 403
BsmFI	GGGAC	2 cut(s)	65, 475
BsnI	GGCC	3 cut(s)	284, 417, 436
BsoBI	CYCGRG	3 cut(s)	254, 271, 388
Bsp1286I	GDGCHC	1 cut(s)	329
Bsp143I	GATC	4 cut(s)	70, 109, 130, 165
BspACI	CCGC	3 cut(s)	56, 84, 357
BspANI	GGCC	3 cut(s)	284, 417, 436
BspFNI	CGCG	1 cut(s)	124
BspLI	GGNNCC	2 cut(s)	215, 422
BspPI	GGATC	2 cut(s)	125, 160
BspT107I	GGYRCC	2 cut(s)	213, 420
BsrFI	RCCGGY	1 cut(s)	417
BssAI	RCCGGY	1 cut(s)	417
BssECI	CCNNGG	1 cut(s)	186
BssHII	GCGCGC	1 cut(s)	122
BssMI	GATC	4 cut(s)	70, 109, 130, 165
BssNI	GRCGYC	2 cut(s)	78, 240
Bst2UI	CCWGG	2 cut(s)	188, 263
Bst4CI	ACNGT	1 cut(s)	43
BstACI	GRCGYC	2 cut(s)	78, 240
BstC8I	GCNNGC	2 cut(s)	124, 368
BstENI	CCTNNNNNAGG	1 cut(s)	254
BstF5I	GGATG	1 cut(s)	370
BstFNI	CGCG	1 cut(s)	124
BstH2I	RGCGCY	2 cut(s)	150, 175
BstHHI	GCGC	4 cut(s)	124, 126, 149, 174
BstKTI	GATC	4 cut(s)	73, 112, 133, 168
BstMBI	GATC	4 cut(s)	70, 109, 130, 165
BstMCI	CGRYCG	2 cut(s)	285, 418
BstNI	CCWGG	2 cut(s)	188, 263
BstNSI	RCATGY	1 cut(s)	370
BstSCI	CCNGG	2 cut(s)	186, 261
BstUI	CGCG	1 cut(s)	124
BstV1I	GCAGC	2 cut(s)	131, 303
BstX2I	RGATCY	1 cut(s)	70
BstYI	RGATCY	1 cut(s)	70
BstZI	CGGCCG	2 cut(s)	282, 415
BsuRI	GGCC	3 cut(s)	284, 417, 436
BtgZI	GCGATG	1 cut(s)	78
BtrI	CACGTC	1 cut(s)	310
BtsCI	GGATG	1 cut(s)	370
Cac8I	GCNNGC	2 cut(s)	124, 368
CfoI	GCGC	4 cut(s)	124, 126, 149, 174
Cfr10I	RCCGGY	1 cut(s)	417
Cfr13I	GGNCC	2 cut(s)	161, 259
Csp6I	GTAC	2 cut(s)	199, 421
CviAII	CATG	5 cut(s)	104, 295, 346, 367, 446
CviQI	GTAC	2 cut(s)	199, 421
DpnI	GATC	4 cut(s)	72, 111, 132, 167
DpnII	GATC	4 cut(s)	70, 109, 130, 165
EaeI	YGGCCR	2 cut(s)	282, 415
EagI	CGGCCG	2 cut(s)	282, 415
EclXI	CGGCCG	2 cut(s)	282, 415
Eco24I	GRGCYC	1 cut(s)	329
Eco47I	GGWCC	2 cut(s)	161, 259
Eco52I	CGGCCG	2 cut(s)	282, 415
Eco88I	CYCGRG	3 cut(s)	254, 271, 388
EcoNI	CCTNNNNNAGG	1 cut(s)	254
EcoRII	CCWGG	2 cut(s)	186, 261
EcoT22I	ATGCAT	1 cut(s)	372
EcoT38I	GRGCYC	1 cut(s)	329
FaeI	CATG	5 cut(s)	107, 298, 349, 370, 449
FaqI	GGGAC	2 cut(s)	65, 475
FatI	CATG	5 cut(s)	103, 294, 345, 366, 445
FauI	CCCGC	2 cut(s)	91, 364
FbaI	TGATCA	1 cut(s)	109
Fnu4HI	GCNGC	2 cut(s)	120, 292
FokI	GGATG	1 cut(s)	357
FriOI	GRGCYC	1 cut(s)	329
Fsp4HI	GCNGC	2 cut(s)	120, 292
GlaI	GCGC	4 cut(s)	123, 125, 148, 173
GluI	GCNGC	2 cut(s)	120, 292
HaeII	RGCGCY	2 cut(s)	150, 175
HaeIII	GGCC	3 cut(s)	284, 417, 436
HapII	CCGG	4 cut(s)	169, 281, 374, 418
HhaI	GCGC	4 cut(s)	124, 126, 149, 174
Hin1I	GRCGYC	2 cut(s)	78, 240
Hin1II	CATG	5 cut(s)	107, 298, 349, 370, 449
Hin6I	GCGC	4 cut(s)	122, 124, 147, 172
HinP1I	GCGC	4 cut(s)	122, 124, 147, 172
HpaII	CCGG	4 cut(s)	169, 281, 374, 418
HphI	GGTGA	2 cut(s)	3, 55
Hpy166II	GTNNAC	1 cut(s)	11
Hpy188I	TCNGA	5 cut(s)	28, 97, 165, 383, 500
Hpy188III	TCNNGA	4 cut(s)	74, 113, 208, 465
Hpy8I	GTNNAC	1 cut(s)	11
Hpy99I	CGWCG	3 cut(s)	28, 80, 242
HpyAV	CCTTC	1 cut(s)	92
HpyCH4III	ACNGT	1 cut(s)	43
HpyCH4IV	ACGT	3 cut(s)	78, 240, 309
HpyCH4V	TGCA	1 cut(s)	370
HpySE526I	ACGT	3 cut(s)	78, 240, 309
Hsp92I	GRCGYC	2 cut(s)	78, 240
Hsp92II	CATG	5 cut(s)	107, 298, 349, 370, 449
HspAI	GCGC	4 cut(s)	122, 124, 147, 172
KpnI	GGTACC	1 cut(s)	424
Ksp22I	TGATCA	1 cut(s)	109
Kzo9I	GATC	4 cut(s)	70, 109, 130, 165
LpnPI	CCDG	9 cut(s)	173, 182, 200, 248, 275, 290, 294, 387, 431
Lsp1109I	GCAGC	2 cut(s)	131, 303
LweI	GCATC	1 cut(s)	379
MaeII	ACGT	3 cut(s)	78, 240, 309
MalI	GATC	4 cut(s)	72, 111, 132, 167
MboI	GATC	4 cut(s)	70, 109, 130, 165
MflI	RGATCY	1 cut(s)	70
MhlI	GDGCHC	1 cut(s)	329
MmeI	TCCRAC	3 cut(s)	6, 208, 406
Mph1103I	ATGCAT	1 cut(s)	372
MspI	CCGG	4 cut(s)	169, 281, 374, 418
MspR9I	CCNGG	2 cut(s)	188, 263
MvaI	CCWGG	2 cut(s)	188, 263
MvnI	CGCG	1 cut(s)	124
NdeII	GATC	4 cut(s)	70, 109, 130, 165
NlaIII	CATG	5 cut(s)	107, 298, 349, 370, 449
NlaIV	GGNNCC	2 cut(s)	215, 422
NmeAIII	GCCGAG	1 cut(s)	30
NsiI	ATGCAT	1 cut(s)	372
NspI	RCATGY	1 cut(s)	370
PaeI	GCATGC	1 cut(s)	370
PaeR7I	CTCGAG	1 cut(s)	254
PauI	GCGCGC	1 cut(s)	122
PflFI	GACNNNGTC	1 cut(s)	239
PkrI	GCNGC	2 cut(s)	121, 293
Psp6I	CCWGG	2 cut(s)	186, 261
PspGI	CCWGG	2 cut(s)	186, 261
PspN4I	GGNNCC	2 cut(s)	215, 422
PspPI	GGNCC	2 cut(s)	161, 259
PspXI	VCTCGAGB	1 cut(s)	254
PsuI	RGATCY	1 cut(s)	70
PsyI	GACNNNGTC	1 cut(s)	239
PteI	GCGCGC	1 cut(s)	122
RsaI	GTAC	2 cut(s)	200, 422
RsaNI	GTAC	2 cut(s)	199, 421
SatI	GCNGC	2 cut(s)	120, 292
Sau3AI	GATC	4 cut(s)	70, 109, 130, 165
Sau96I	GGNCC	2 cut(s)	161, 259
ScaI	AGTACT	1 cut(s)	200
ScrFI	CCNGG	2 cut(s)	188, 263
SduI	GDGCHC	1 cut(s)	329
SfaNI	GCATC	1 cut(s)	379
Sfr274I	CTCGAG	1 cut(s)	254
SinI	GGWCC	2 cut(s)	161, 259
SlaI	CTCGAG	1 cut(s)	254
SmlI	CTYRAG	1 cut(s)	254
SmoI	CTYRAG	1 cut(s)	254
SphI	GCATGC	1 cut(s)	370
SsiI	CCGC	3 cut(s)	56, 84, 357
StyD4I	CCNGG	2 cut(s)	186, 261
TaaI	ACNGT	1 cut(s)	43
TaiI	ACGT	3 cut(s)	81, 243, 312
TaqI	TCGA	3 cut(s)	75, 177, 255
TatI	WGTACW	1 cut(s)	198
TseI	GCWGC	2 cut(s)	119, 291
TspDTI	ATGAA	1 cut(s)	193
TspGWI	ACGGA	1 cut(s)	12
Tth111I	GACNNNGTC	1 cut(s)	239
VpaK11BI	GGWCC	2 cut(s)	161, 259
XagI	CCTNNNNNAGG	1 cut(s)	254
XceI	RCATGY	1 cut(s)	370
XcmI	CCANNNNNNNNNTGG	1 cut(s)	224
XhoI	CTCGAG	1 cut(s)	254
ZraI	GACGTC	2 cut(s)	79, 241
ZrmI	AGTACT	1 cut(s)	200
Zsp2I	ATGCAT	1 cut(s)	372

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.