Rroxscaffold_5G00365770

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0002282
Physical Location & Seq
Reverse (-)
47453551 .. 47458922
5372 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00365770.1

Sequence Viewer

Length: 186 bp
ATGGCTAGCCCCGCCTATGGCATGCATCCGGTAGGCCGACATCCGAGCTACATTGCCATGGTGGAGGTCGGCCGGTATCTAGTTGGGAGGCCACCCTCCCATGATCTTCAAAAGGCTTCAAGAGAAGTAATATGTGTATGTTGTATCCCACATCGGAAATGTAGAATAGAGTGGGACTTCCCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

61

Amino Acids

6.95

Weight (kDa)

8.86

Isoelectric Point (pI)

56.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 12
AcoI YGGCCR 1 cut(s) 70
AfiI CCNNNNNNNGG 1 cut(s) 17
AgsI TTSAA 2 cut(s) 110, 120
AluBI AGCT 1 cut(s) 48
AluI AGCT 1 cut(s) 48
AoxI GGCC 3 cut(s) 34, 70, 89
AsuNHI GCTAGC 1 cut(s) 5
BciVI GTATCC 1 cut(s) 155
BfaI CTAG 2 cut(s) 6, 80
BfuI GTATCC 1 cut(s) 155
BmsI GCATC 1 cut(s) 34
BmtI GCTAGC 1 cut(s) 9
BsaJI CCNNGG 1 cut(s) 57
BsaWI WCCGGW 1 cut(s) 28
Bsc4I CCNNNNNNNGG 1 cut(s) 17
Bse118I RCCGGY 1 cut(s) 72
Bse3DI GCAATG 1 cut(s) 51
BseDI CCNNGG 1 cut(s) 57
BseGI GGATG 2 cut(s) 25, 40
BseLI CCNNNNNNNGG 1 cut(s) 17
BseMI GCAATG 1 cut(s) 51
BseX3I CGGCCG 1 cut(s) 70
Bsh1285I CGRYCG 1 cut(s) 73
BshFI GGCC 3 cut(s) 36, 72, 91
BsiEI CGRYCG 1 cut(s) 73
BsiSI CCGG 2 cut(s) 29, 73
BslI CCNNNNNNNGG 1 cut(s) 17
BsnI GGCC 3 cut(s) 36, 72, 91
Bsp143I GATC 1 cut(s) 103
Bsp19I CCATGG 1 cut(s) 57
BspACI CCGC 1 cut(s) 12
BspANI GGCC 3 cut(s) 36, 72, 91
BspOI GCTAGC 1 cut(s) 9
BsrDI GCAATG 1 cut(s) 51
BsrFI RCCGGY 1 cut(s) 72
BssAI RCCGGY 1 cut(s) 72
BssECI CCNNGG 1 cut(s) 57
BssMI GATC 1 cut(s) 103
BssT1I CCWWGG 1 cut(s) 57
BstC8I GCNNGC 2 cut(s) 7, 23
BstDEI CTNAG 1 cut(s) 183
BstDSI CCRYGG 1 cut(s) 57
BstF5I GGATG 2 cut(s) 25, 40
BstKTI GATC 1 cut(s) 106
BstMBI GATC 1 cut(s) 103
BstMCI CGRYCG 1 cut(s) 73
BstMWI GCNNNNNNNGC 1 cut(s) 11
BstNSI RCATGY 1 cut(s) 25
BstZI CGGCCG 1 cut(s) 70
BsuI GTATCC 1 cut(s) 155
BsuRI GGCC 3 cut(s) 36, 72, 91
BtgI CCRYGG 1 cut(s) 57
BtsCI GGATG 2 cut(s) 25, 40
Cac8I GCNNGC 2 cut(s) 7, 23
Cfr10I RCCGGY 1 cut(s) 72
CviAII CATG 3 cut(s) 22, 58, 101
CviJI RGCY 7 cut(s) 5, 9, 36, 48, 72, 91, 116
CviKI_1 RGCY 7 cut(s) 5, 9, 36, 48, 72, 91, 116
DdeI CTNAG 1 cut(s) 183
DpnI GATC 1 cut(s) 105
DpnII GATC 1 cut(s) 103
EaeI YGGCCR 1 cut(s) 70
EagI CGGCCG 1 cut(s) 70
EclXI CGGCCG 1 cut(s) 70
Eco130I CCWWGG 1 cut(s) 57
Eco52I CGGCCG 1 cut(s) 70
EcoT14I CCWWGG 1 cut(s) 57
EcoT22I ATGCAT 1 cut(s) 27
ErhI CCWWGG 1 cut(s) 57
FaeI CATG 3 cut(s) 25, 61, 104
FaiI YATR 6 cut(s) 18, 23, 59, 102, 133, 139
FatI CATG 3 cut(s) 21, 57, 100
FauI CCCGC 1 cut(s) 19
FokI GGATG 2 cut(s) 12, 27
FspBI CTAG 2 cut(s) 6, 80
HaeIII GGCC 3 cut(s) 36, 72, 91
HapII CCGG 2 cut(s) 29, 73
Hin1II CATG 3 cut(s) 25, 61, 104
HpaII CCGG 2 cut(s) 29, 73
Hpy188I TCNGA 2 cut(s) 45, 156
Hpy188III TCNNGA 1 cut(s) 120
HpyCH4V TGCA 1 cut(s) 25
HpyF10VI GCNNNNNNNGC 1 cut(s) 11
HpyF3I CTNAG 1 cut(s) 183
Hsp92II CATG 3 cut(s) 25, 61, 104
Kzo9I GATC 1 cut(s) 103
LpnPI CCDG 2 cut(s) 42, 86
LweI GCATC 1 cut(s) 34
MaeI CTAG 2 cut(s) 6, 80
MalI GATC 1 cut(s) 105
MboI GATC 1 cut(s) 103
MboII GAAGA 1 cut(s) 98
MnlI CCTC 3 cut(s) 58, 81, 106
Mph1103I ATGCAT 1 cut(s) 27
MslI CAYNNNNRTG 1 cut(s) 56
MspI CCGG 2 cut(s) 29, 73
MwoI GCNNNNNNNGC 1 cut(s) 11
NcoI CCATGG 1 cut(s) 57
NdeII GATC 1 cut(s) 103
NheI GCTAGC 1 cut(s) 5
NlaIII CATG 3 cut(s) 25, 61, 104
NsiI ATGCAT 1 cut(s) 27
NspI RCATGY 1 cut(s) 25
PaeI GCATGC 1 cut(s) 25
RseI CAYNNNNRTG 1 cut(s) 56
Sau3AI GATC 1 cut(s) 103
SetI ASST 2 cut(s) 50, 69
SfaNI GCATC 1 cut(s) 34
SmiMI CAYNNNNRTG 1 cut(s) 56
SphI GCATGC 1 cut(s) 25
SsiI CCGC 1 cut(s) 12
SspMI CTAG 2 cut(s) 6, 80
StyI CCWWGG 1 cut(s) 57
XceI RCATGY 1 cut(s) 25
XspI CTAG 2 cut(s) 6, 80
Zsp2I ATGCAT 1 cut(s) 27
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.