Rh6AG198000

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
Physical Location & Seq
Forward (+)
35551648 .. 35579730
28083 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG198000.1

Sequence Viewer

Length: 528 bp
ATGCAAAGGAGTATCTACATTGTTCTGTTGCCACTGTTCCTGATTCTGTTGTTTGGTGTTAGTTCAGTGCCCAGTTTTCATTCAGATATCAGGAATAGTGTGTTATCAAAAACTACAAGTATTTCAAATTCAGTAATGGGACCAAAACCAATGTTTAGAAGAACAAAGAGGGATACAAGTGAACCCGCAATTCGGCAAAGAAGAACTAAATCTAATTGTATTTTGTTCGGTGGACATCAATACGATGAGGCTAGATCAAAGAAATCGAAAACAATGTCTGATGTCCAAATTGCTGAAAGATCAAATCAATCTGGGAATATTGATGGATTTGAGTACTATGATGAACGGTTTACGAATAAGAACCAAAATAATTTCTGTACAGATGACAACGGACGCTCTCCTTCAACTGTGGTTGCACAAGGGAATCAATATAGTGCAATTAACTCGAGGAGGTGGAAAACATTATCTCAACCAATAATGACAAGAGAGAATCAGCTTGGGGAAATGAGAATCAGAATGTTGACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

175

Amino Acids

20.07

Weight (kDa)

10.12

Isoelectric Point (pI)

58.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 186
AcsI RAATTY 1 cut(s) 127
AfaI GTAC 2 cut(s) 335, 379
AfiI CCNNNNNNNGG 1 cut(s) 192
AgsI TTSAA 2 cut(s) 126, 405
AluBI AGCT 1 cut(s) 496
AluI AGCT 1 cut(s) 496
Ama87I CYCGRG 1 cut(s) 445
ApoI RAATTY 1 cut(s) 127
ArsI GACNNNNNNTTYG 2 cut(s) 260, 292
AspS9I GGNCC 1 cut(s) 140
AvaI CYCGRG 1 cut(s) 445
AvaII GGWCC 1 cut(s) 140
BaeGI GKGCMC 1 cut(s) 72
BccI CCATC 1 cut(s) 317
BcgI CGANNNNNNTGC 2 cut(s) 426, 460
BciVI GTATCC 1 cut(s) 166
BfaI CTAG 1 cut(s) 252
BfuI GTATCC 1 cut(s) 166
BmcAI AGTACT 1 cut(s) 335
Bme18I GGWCC 1 cut(s) 140
BmeT110I CYCGRG 1 cut(s) 445
BmgT120I GGNCC 1 cut(s) 140
BmiI GGNNCC 1 cut(s) 141
BmrI ACTGGG 1 cut(s) 66
BmuI ACTGGG 1 cut(s) 66
Bsc4I CCNNNNNNNGG 1 cut(s) 192
Bse1I ACTGG 1 cut(s) 72
BseLI CCNNNNNNNGG 1 cut(s) 192
BseNI ACTGG 1 cut(s) 72
BseRI GAGGAG 1 cut(s) 463
BseSI GKGCMC 1 cut(s) 72
BsiHKCI CYCGRG 1 cut(s) 445
BslFI GGGAC 1 cut(s) 153
BslI CCNNNNNNNGG 1 cut(s) 192
BsmFI GGGAC 1 cut(s) 153
BsoBI CYCGRG 1 cut(s) 445
Bsp1286I GDGCHC 1 cut(s) 72
Bsp1407I TGTACA 1 cut(s) 377
Bsp143I GATC 2 cut(s) 254, 299
BspACI CCGC 1 cut(s) 186
BspLI GGNNCC 1 cut(s) 141
BsrGI TGTACA 1 cut(s) 377
BsrI ACTGG 1 cut(s) 72
BssMI GATC 2 cut(s) 254, 299
Bst4CI ACNGT 3 cut(s) 36, 348, 409
BstAUI TGTACA 1 cut(s) 377
BstKTI GATC 2 cut(s) 257, 302
BstMBI GATC 2 cut(s) 254, 299
BstSLI GKGCMC 1 cut(s) 72
BsuI GTATCC 1 cut(s) 166
BtsIMutI CAGTG 2 cut(s) 32, 72
Cfr13I GGNCC 1 cut(s) 140
CseI GACGC 1 cut(s) 402
Csp6I GTAC 2 cut(s) 334, 378
CviJI RGCY 2 cut(s) 251, 496
CviKI_1 RGCY 2 cut(s) 251, 496
CviQI GTAC 2 cut(s) 334, 378
DpnI GATC 2 cut(s) 256, 301
DpnII GATC 2 cut(s) 254, 299
Eco32I GATATC 1 cut(s) 88
Eco47I GGWCC 1 cut(s) 140
Eco88I CYCGRG 1 cut(s) 445
EcoRV GATATC 1 cut(s) 88
FaiI YATR 3 cut(s) 339, 432, 526
FaqI GGGAC 1 cut(s) 153
FauI CCCGC 1 cut(s) 193
FspBI CTAG 1 cut(s) 252
HgaI GACGC 1 cut(s) 402
HincII GTYRAC 1 cut(s) 522
HindII GTYRAC 1 cut(s) 522
HinfI GANTC 4 cut(s) 43, 424, 490, 510
Hpy166II GTNNAC 4 cut(s) 182, 233, 351, 522
Hpy188I TCNGA 3 cut(s) 85, 280, 515
Hpy188III TCNNGA 2 cut(s) 40, 91
Hpy8I GTNNAC 4 cut(s) 182, 233, 351, 522
HpyAV CCTTC 1 cut(s) 411
HpyCH4III ACNGT 3 cut(s) 36, 348, 409
HpyCH4V TGCA 3 cut(s) 4, 416, 437
Kzo9I GATC 2 cut(s) 254, 299
LpnPI CCDG 4 cut(s) 53, 76, 85, 297
MaeI CTAG 1 cut(s) 252
MalI GATC 2 cut(s) 256, 301
MboI GATC 2 cut(s) 254, 299
MboII GAAGA 2 cut(s) 171, 213
MhlI GDGCHC 1 cut(s) 72
MluCI AATT 6 cut(s) 127, 189, 214, 288, 370, 438
MnlI CCTC 4 cut(s) 162, 241, 441, 444
MseI TTAA 1 cut(s) 441
NdeII GATC 2 cut(s) 254, 299
NlaIV GGNNCC 1 cut(s) 141
PaeR7I CTCGAG 1 cut(s) 445
PfeI GAWTC 4 cut(s) 43, 424, 490, 510
PspN4I GGNNCC 1 cut(s) 141
PspPI GGNCC 1 cut(s) 140
PspXI VCTCGAGB 1 cut(s) 445
RsaI GTAC 2 cut(s) 335, 379
RsaNI GTAC 2 cut(s) 334, 378
SaqAI TTAA 1 cut(s) 441
Sau3AI GATC 2 cut(s) 254, 299
Sau96I GGNCC 1 cut(s) 140
ScaI AGTACT 1 cut(s) 335
SduI GDGCHC 1 cut(s) 72
SetI ASST 2 cut(s) 455, 498
Sfr274I CTCGAG 1 cut(s) 445
SinI GGWCC 1 cut(s) 140
SlaI CTCGAG 1 cut(s) 445
SmlI CTYRAG 1 cut(s) 445
SmoI CTYRAG 1 cut(s) 445
Sse9I AATT 6 cut(s) 127, 189, 214, 288, 370, 438
SsiI CCGC 1 cut(s) 186
SspI AATATT 1 cut(s) 319
SspMI CTAG 1 cut(s) 252
TaaI ACNGT 3 cut(s) 36, 348, 409
TaqI TCGA 2 cut(s) 266, 446
TasI AATT 6 cut(s) 127, 189, 214, 288, 370, 438
TatI WGTACW 2 cut(s) 333, 377
TfiI GAWTC 4 cut(s) 43, 424, 490, 510
Tru1I TTAA 1 cut(s) 441
Tru9I TTAA 1 cut(s) 441
TscAI CASTG 2 cut(s) 39, 72
TspDTI ATGAA 2 cut(s) 68, 357
TspGWI ACGGA 1 cut(s) 405
TspRI CASTG 2 cut(s) 39, 72
VpaK11BI GGWCC 1 cut(s) 140
XapI RAATTY 1 cut(s) 127
XhoI CTCGAG 1 cut(s) 445
XspI CTAG 1 cut(s) 252
ZrmI AGTACT 1 cut(s) 335
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.