Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0002282

Physical Location & Seq

Genomic Coordinates Reverse (-)

2179696 .. 2213944

Gene Structure 34249 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG023900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGTGCAAGGAGCTTTTTGAATTCGAGCTACTAGCACGGTCTCTAGAGACTCTATTGGACACATCTCTCATAGGAACCCGAGGAGGTAGTGGCGACTTTAACCCTTGCTATGATTCAATTCACTCAGAGATTACAGGTCCAAAAAAGATACATTGTCTTGGCAACATGTTTGATGTCCAAATTGCTGAAGGATCAAATCAATCTGAGAATATTGATGGATTTGAGTACTATGATGAACGGTTTAGGAATCAGAATCAAAATAATTTCTGTAGCGATGACAACGGACGCTCTCCTACAGCTGTGGTTGCACAAGGGAATCAATATAGTTCAATTAACTCGAGGAGGTGGAAAACATTATCTCAACCAATAATGACAAGAGAGAATCAGCTTGGGGAAATGAGCAATCAGAATGTTGACATAATGGAAGATCGTGATCAACAAGAGGTTGTTCAGATCACAGGTGTAAGGCGCTGGGTATGGTCACAATCTGAACTGTTCAAAGGTCCAATCATTCATCTTTGGGGGTTCTATCTCAACCTGGTCTTCTTCTTTACAGTTGAGTTGGTTTTGTGTGGAGATAGTGCAGTAGTTGCTCATGTCTTTGTACAACTGCAGCAATTGGATGTTCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

210

Amino Acids

24.04

Weight (kDa)

4.75

Isoelectric Point (pI)

48.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002282)

Species	Orthologous Gene IDs
pyrus_communis	pycom10g17910
rosa_chinensis	RchiOBHm_Chr2g0127881 RchiOBHm_Chr2g0128071 RchiOBHm_Chr2g0168141 RchiOBHm_Chr4g0394061 RchiOBHm_Chr4g0409481 RchiOBHm_Chr5g0057941 RchiOBHm_Chr6g0289331
rosa_multiflora	Rmu_sc0001136.1_g000034 Rmu_sc0002501.1_g000016 Rmu_sc0003941.1_g000003 Rmu_sc0012303.1_g000002 Rmu_sc0018337.1_g000005 Rmu_sc0023137.1_g000011 Rmu_sc0037818.1_g000001 Rmu_ssc0000118.1_g000006
rosa_roxburghii	Rroxscaffold_177G00434380 Rroxscaffold_1G00074020 Rroxscaffold_2G00119630 Rroxscaffold_4G00297870 Rroxscaffold_4G00303680 Rroxscaffold_4G00311340 Rroxscaffold_5G00333250 Rroxscaffold_5G00333260 Rroxscaffold_5G00365770 Rroxscaffold_5G00382860 Rroxscaffold_6G00423070 Rroxscaffold_7G00193890 Rroxscaffold_7G00201810
rosa_rugosa	Rorug05G0198200 Rorug05G0255000 Rorug05G0428300
rosa_samantha	Rh2BG339100 Rh2BG613700 Rh2CG365300 Rh5BG509200 Rh5DG521900 Rh6AG198000 Rh6BG265900 Rh6CG023900 Rh6DG023800 Rh7DG045500
rosa_wichuraiana	Rw0G014170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	199
AcsI	RAATTY	1 cut(s)	20
AcuI	CTGAAG	1 cut(s)	207
AfaI	GTAC	2 cut(s)	227, 606
AflIII	ACRYGT	1 cut(s)	165
AgsI	TTSAA	4 cut(s)	20, 117, 330, 499
AjnI	CCWGG	1 cut(s)	537
AluBI	AGCT	4 cut(s)	13, 28, 299, 388
AluI	AGCT	4 cut(s)	13, 28, 299, 388
Alw26I	GTCTC	2 cut(s)	41, 45
AlwI	GGATC	1 cut(s)	199
Ama87I	CYCGRG	2 cut(s)	78, 337
ApeKI	GCWGC	1 cut(s)	613
ApoI	RAATTY	1 cut(s)	20
AspLEI	GCGC	1 cut(s)	471
AspS9I	GGNCC	2 cut(s)	137, 503
AvaI	CYCGRG	2 cut(s)	78, 337
AvaII	GGWCC	2 cut(s)	137, 503
BbsI	GAAGAC	1 cut(s)	535
BbvI	GCAGC	1 cut(s)	625
BccI	CCATC	1 cut(s)	209
BciT130I	CCWGG	1 cut(s)	539
BclI	TGATCA	1 cut(s)	433
BcoDI	GTCTC	2 cut(s)	41, 45
BfaI	CTAG	2 cut(s)	32, 44
BfmI	CTRYAG	3 cut(s)	268, 294, 611
BfoI	RGCGCY	1 cut(s)	472
BisI	GCNGC	1 cut(s)	614
BlsI	GCNGC	1 cut(s)	615
BmcAI	AGTACT	1 cut(s)	227
Bme1390I	CCNGG	1 cut(s)	539
Bme18I	GGWCC	2 cut(s)	137, 503
BmeT110I	CYCGRG	2 cut(s)	78, 337
BmgT120I	GGNCC	2 cut(s)	137, 503
BmiI	GGNNCC	1 cut(s)	76
BmrFI	CCNGG	1 cut(s)	539
BpiI	GAAGAC	1 cut(s)	535
BsaBI	GATNNNNATC	1 cut(s)	432
BsaI	GGTCTC	1 cut(s)	45
BsaJI	CCNNGG	1 cut(s)	79
Bse8I	GATNNNNATC	1 cut(s)	432
BseBI	CCWGG	1 cut(s)	539
BseDI	CCNNGG	1 cut(s)	79
BseGI	GGATG	1 cut(s)	628
BseJI	GATNNNNATC	1 cut(s)	432
BseMII	CTCAG	2 cut(s)	138, 195
BseRI	GAGGAG	2 cut(s)	96, 355
BseXI	GCAGC	1 cut(s)	625
BseYI	CCCAGC	1 cut(s)	471
BsgI	GTGCAG	1 cut(s)	603
BsiHKCI	CYCGRG	2 cut(s)	78, 337
BsmAI	GTCTC	2 cut(s)	41, 45
Bso31I	GGTCTC	1 cut(s)	45
BsoBI	CYCGRG	2 cut(s)	78, 337
Bsp1407I	TGTACA	1 cut(s)	604
Bsp143I	GATC	4 cut(s)	191, 427, 433, 453
BspCNI	CTCAG	2 cut(s)	137, 196
BspLI	GGNNCC	1 cut(s)	76
BspMAI	CTGCAG	1 cut(s)	615
BspPI	GGATC	1 cut(s)	199
BspTNI	GGTCTC	1 cut(s)	45
BsrGI	TGTACA	1 cut(s)	604
BssECI	CCNNGG	1 cut(s)	79
BssMI	GATC	4 cut(s)	191, 427, 433, 453
Bst2UI	CCWGG	1 cut(s)	539
Bst4CI	ACNGT	4 cut(s)	39, 240, 495, 556
BstAPI	GCANNNNNTGC	1 cut(s)	590
BstAUI	TGTACA	1 cut(s)	604
BstDEI	CTNAG	2 cut(s)	124, 204
BstF5I	GGATG	1 cut(s)	628
BstH2I	RGCGCY	1 cut(s)	472
BstHHI	GCGC	1 cut(s)	471
BstKTI	GATC	4 cut(s)	194, 430, 436, 456
BstMAI	GTCTC	2 cut(s)	41, 45
BstMBI	GATC	4 cut(s)	191, 427, 433, 453
BstMWI	GCNNNNNNNGC	2 cut(s)	305, 590
BstNI	CCWGG	1 cut(s)	539
BstNSI	RCATGY	1 cut(s)	169
BstSCI	CCNGG	1 cut(s)	537
BstSFI	CTRYAG	3 cut(s)	268, 294, 611
BstV1I	GCAGC	1 cut(s)	625
BstV2I	GAAGAC	1 cut(s)	535
BtgZI	GCGATG	1 cut(s)	288
BtsCI	GGATG	1 cut(s)	628
BtsIMutI	CAGTG	1 cut(s)	628
CfoI	GCGC	1 cut(s)	471
Cfr13I	GGNCC	2 cut(s)	137, 503
CseI	GACGC	1 cut(s)	294
CsiI	ACCWGGT	1 cut(s)	537
Csp6I	GTAC	2 cut(s)	226, 605
CviAII	CATG	2 cut(s)	166, 596
CviJI	RGCY	4 cut(s)	13, 28, 299, 388
CviKI_1	RGCY	4 cut(s)	13, 28, 299, 388
CviQI	GTAC	2 cut(s)	226, 605
DdeI	CTNAG	2 cut(s)	124, 204
DpnI	GATC	4 cut(s)	193, 429, 435, 455
DpnII	GATC	4 cut(s)	191, 427, 433, 453
Eco31I	GGTCTC	1 cut(s)	45
Eco47I	GGWCC	2 cut(s)	137, 503
Eco57I	CTGAAG	1 cut(s)	207
Eco88I	CYCGRG	2 cut(s)	78, 337
EcoRI	GAATTC	1 cut(s)	20
EcoRII	CCWGG	1 cut(s)	537
FaeI	CATG	2 cut(s)	169, 599
FaiI	YATR	8 cut(s)	71, 111, 167, 231, 324, 419, 478, 597
FatI	CATG	2 cut(s)	165, 595
FbaI	TGATCA	1 cut(s)	433
Fnu4HI	GCNGC	1 cut(s)	614
Fsp4HI	GCNGC	1 cut(s)	614
FspBI	CTAG	2 cut(s)	32, 44
GlaI	GCGC	1 cut(s)	470
GluI	GCNGC	1 cut(s)	614
GsaI	CCCAGC	1 cut(s)	475
HaeII	RGCGCY	1 cut(s)	472
HgaI	GACGC	1 cut(s)	294
HhaI	GCGC	1 cut(s)	471
Hin1II	CATG	2 cut(s)	169, 599
Hin6I	GCGC	1 cut(s)	469
HinP1I	GCGC	1 cut(s)	469
HincII	GTYRAC	1 cut(s)	415
HindII	GTYRAC	1 cut(s)	415
HinfI	GANTC	6 cut(s)	49, 113, 247, 253, 316, 382
Hpy166II	GTNNAC	2 cut(s)	415, 628
Hpy188I	TCNGA	6 cut(s)	127, 205, 252, 408, 453, 490
Hpy188III	TCNNGA	2 cut(s)	44, 431
Hpy8I	GTNNAC	2 cut(s)	415, 628
HpyAV	CCTTC	1 cut(s)	182
HpyCH4III	ACNGT	4 cut(s)	39, 240, 495, 556
HpyCH4V	TGCA	4 cut(s)	6, 308, 584, 613
HpyF10VI	GCNNNNNNNGC	2 cut(s)	305, 590
HpyF3I	CTNAG	2 cut(s)	124, 204
Hsp92II	CATG	2 cut(s)	169, 599
HspAI	GCGC	1 cut(s)	469
Ksp22I	TGATCA	1 cut(s)	433
Kzo9I	GATC	4 cut(s)	191, 427, 433, 453
LmnI	GCTCC	1 cut(s)	10
LpnPI	CCDG	5 cut(s)	120, 444, 457, 524, 551
Lsp1109I	GCAGC	1 cut(s)	625
MabI	ACCWGGT	1 cut(s)	537
MaeI	CTAG	2 cut(s)	32, 44
MaeIII	GTNAC	1 cut(s)	480
MalI	GATC	4 cut(s)	193, 429, 435, 455
MboI	GATC	4 cut(s)	191, 427, 433, 453
MboII	GAAGA	3 cut(s)	437, 535, 538
MfeI	CAATTG	1 cut(s)	617
MluCI	AATT	6 cut(s)	20, 117, 180, 262, 330, 617
MlyI	GAGTC	1 cut(s)	43
MnlI	CCTC	5 cut(s)	74, 77, 333, 336, 436
MseI	TTAA	2 cut(s)	99, 333
MspA1I	CMGCKG	1 cut(s)	299
MspR9I	CCNGG	1 cut(s)	539
MunI	CAATTG	1 cut(s)	617
MvaI	CCWGG	1 cut(s)	539
MwoI	GCNNNNNNNGC	2 cut(s)	305, 590
NdeII	GATC	4 cut(s)	191, 427, 433, 453
NlaIII	CATG	2 cut(s)	169, 599
NlaIV	GGNNCC	1 cut(s)	76
NmuCI	GTSAC	1 cut(s)	480
NspI	RCATGY	1 cut(s)	169
PaeR7I	CTCGAG	1 cut(s)	337
PciI	ACATGT	1 cut(s)	165
PfeI	GAWTC	5 cut(s)	113, 247, 253, 316, 382
PkrI	GCNGC	1 cut(s)	615
PleI	GAGTC	1 cut(s)	43
PpsI	GAGTC	1 cut(s)	43
PscI	ACATGT	1 cut(s)	165
Psp6I	CCWGG	1 cut(s)	537
PspFI	CCCAGC	1 cut(s)	471
PspGI	CCWGG	1 cut(s)	537
PspN4I	GGNNCC	1 cut(s)	76
PspPI	GGNCC	2 cut(s)	137, 503
PspXI	VCTCGAGB	1 cut(s)	337
PstI	CTGCAG	1 cut(s)	615
PvuII	CAGCTG	1 cut(s)	299
RsaI	GTAC	2 cut(s)	227, 606
RsaNI	GTAC	2 cut(s)	226, 605
SaqAI	TTAA	2 cut(s)	99, 333
SatI	GCNGC	1 cut(s)	614
Sau3AI	GATC	4 cut(s)	191, 427, 433, 453
Sau96I	GGNCC	2 cut(s)	137, 503
ScaI	AGTACT	1 cut(s)	227
SchI	GAGTC	1 cut(s)	43
ScrFI	CCNGG	1 cut(s)	539
SexAI	ACCWGGT	1 cut(s)	537
SfcI	CTRYAG	3 cut(s)	268, 294, 611
Sfr274I	CTCGAG	1 cut(s)	337
SinI	GGWCC	2 cut(s)	137, 503
SlaI	CTCGAG	1 cut(s)	337
SmlI	CTYRAG	1 cut(s)	337
SmoI	CTYRAG	1 cut(s)	337
Sse9I	AATT	6 cut(s)	20, 117, 180, 262, 330, 617
SspI	AATATT	1 cut(s)	211
SspMI	CTAG	2 cut(s)	32, 44
StyD4I	CCNGG	1 cut(s)	537
TaaI	ACNGT	4 cut(s)	39, 240, 495, 556
TaqI	TCGA	2 cut(s)	24, 338
TasI	AATT	6 cut(s)	20, 117, 180, 262, 330, 617
TatI	WGTACW	2 cut(s)	225, 604
TfiI	GAWTC	5 cut(s)	113, 247, 253, 316, 382
Tru1I	TTAA	2 cut(s)	99, 333
Tru9I	TTAA	2 cut(s)	99, 333
TseFI	GTSAC	1 cut(s)	480
TseI	GCWGC	1 cut(s)	613
Tsp45I	GTSAC	1 cut(s)	480
TspDTI	ATGAA	2 cut(s)	249, 503
TspGWI	ACGGA	1 cut(s)	297
VpaK11BI	GGWCC	2 cut(s)	137, 503
XapI	RAATTY	1 cut(s)	20
XbaI	TCTAGA	1 cut(s)	43
XceI	RCATGY	1 cut(s)	169
XhoI	CTCGAG	1 cut(s)	337
XspI	CTAG	2 cut(s)	32, 44
ZrmI	AGTACT	1 cut(s)	227

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.