Rroxscaffold_5G00382860

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0002282
Physical Location & Seq
Forward (+)
62621011 .. 62623553
2543 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00382860.1

Sequence Viewer

Length: 981 bp
ATGGCAGCAACCTCACCTCTTCCCGATGACCCCCCAGATGAGAAATCCCCTCTGGAAACCCATACTCTGATGGCTTCTTTGCTTCACCTCTCGGTGACTCAGCCATGTATGATCCCCGACCGCCTCCGGCACCCAGGTCACCTTTTCAGGTCTCGCTACCTCTCTCCTCCCGGCAGACACGGCATCTCGGTGACTCACTGCCTTTCTTCATCCTGGGGCCTAGCATACCGGAACTCTGGGTGGCTTCCTCACTATCTCCGGTACCAACAGATTACAATACTATCACCGGCACCAGCGACCCTCAGAACTCCTACTCGAAGGTGTTCAGCGAGTTTTAACCTTCCTCAGCACCCTCCCGGTGACATTCACTCGGTCACATTCACCGTTCTGAAAGAAAAAAAAAAAGTACTCTGGGCCCCCGGGGACTGGTTTGGACACCCAATCCGACCGGGACTTGTTTGGTATACTTTCATTTGCCATCACTTCATCTCCAGGCAGCTCATCCTGGAAGGTCTCCTCGTGCCTCATCCCGGAAGTGATCTTCGCACCCAAAGAAAGGGCACCAGAGTCTGCAACCGAGTTGGAGTGATCTCGGTCTCGCCACCACTACAACTCGTTATGGCAGTTCTCTTGGTACCCCAACGGGGTTACGGGGCTACGGCCATCATCCTACCCGAGGCCACGTCACCGGGTACCGAAGGCCAAAGCCACCGGATACCTCAACGGGGTTGGGAGGCTAAAGCCATCATTCTACCCGGGGCCACGCCACCTGGTAAAGGAGGCCTACCGCCCTCATTCAACCTCGTTGAGTTAAGGAGGCTCAAACCCTCATCTACCCCACCGGTACACGAGGTTCAAACCCTCATTCACCTCGACGGGTACACGAGGCTCGAAGCCTATCTACTCCACGGTGCTAAGGCTCAAGCCTATCTACCCCACCGGTACACGAGGCCTACAGGCCCTCATAAATCCTCTACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

326

Amino Acids

36.08

Weight (kDa)

10.05

Isoelectric Point (pI)

52.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 3 cut(s) 261, 634, 692
AccB1I GGYRCC 6 cut(s) 129, 261, 289, 560, 634, 692
AccI GTMKAC 1 cut(s) 464
AciI CCGC 2 cut(s) 121, 788
AclWI GGATC 1 cut(s) 106
AcoI YGGCCR 1 cut(s) 660
AfaI GTAC 7 cut(s) 263, 408, 636, 694, 846, 881, 944
AfiI CCNNNNNNNGG 7 cut(s) 426, 530, 556, 644, 676, 725, 776
AgeI ACCGGT 2 cut(s) 841, 939
AgsI TTSAA 2 cut(s) 799, 857
AjiI CACGTC 1 cut(s) 684
AjnI CCWGG 5 cut(s) 133, 212, 491, 504, 769
AluBI AGCT 1 cut(s) 499
AluI AGCT 1 cut(s) 499
Alw26I GTCTC 3 cut(s) 156, 518, 601
AlwI GGATC 1 cut(s) 106
AlwNI CAGNNNCTG 1 cut(s) 570
Ama87I CYCGRG 3 cut(s) 419, 674, 755
AoxI GGCC 9 cut(s) 217, 414, 660, 678, 700, 759, 781, 950, 958
ApaI GGGCCC 1 cut(s) 418
ApeKI GCWGC 2 cut(s) 5, 496
AsiGI ACCGGT 2 cut(s) 841, 939
Asp700I GAANNNNTTC 1 cut(s) 322
Asp718I GGTACC 3 cut(s) 261, 634, 692
AspS9I GGNCC 5 cut(s) 217, 414, 415, 759, 959
AsuC2I CCSGG 9 cut(s) 171, 357, 420, 421, 450, 531, 690, 756, 757
AvaI CYCGRG 3 cut(s) 419, 674, 755
BaeGI GKGCMC 2 cut(s) 418, 563
BanI GGYRCC 6 cut(s) 129, 261, 289, 560, 634, 692
BanII GRGCYC 1 cut(s) 418
BarI GAAGNNNNNNTAC 2 cut(s) 885, 917
BauI CACGAG 4 cut(s) 518, 848, 883, 946
BbvCI CCTCAGC 1 cut(s) 345
BbvI GCAGC 2 cut(s) 17, 508
BccI CCATC 4 cut(s) 64, 486, 671, 752
BceAI ACGGC 2 cut(s) 196, 675
BciT130I CCWGG 5 cut(s) 135, 214, 493, 506, 771
BciVI GTATCC 1 cut(s) 708
BcnI CCSGG 9 cut(s) 171, 357, 420, 421, 450, 531, 690, 756, 757
BcoDI GTCTC 3 cut(s) 156, 518, 601
BfaI CTAG 1 cut(s) 221
BfmI CTRYAG 1 cut(s) 954
BfuI GTATCC 1 cut(s) 708
BisI GCNGC 2 cut(s) 6, 497
BlsI GCNGC 2 cut(s) 7, 498
BmcAI AGTACT 1 cut(s) 408
BmeT110I CYCGRG 3 cut(s) 419, 674, 755
BmgBI CACGTC 1 cut(s) 684
BmgT120I GGNCC 5 cut(s) 217, 414, 415, 759, 959
BmsI GCATC 1 cut(s) 192
BpmI CTGGAG 1 cut(s) 475
Bpu10I CCTNAGC 2 cut(s) 345, 915
BpuEI CTTGAG 1 cut(s) 906
BpuMI CCSGG 9 cut(s) 171, 357, 420, 421, 450, 531, 690, 756, 757
BsaI GGTCTC 3 cut(s) 156, 518, 601
BsaJI CCNNGG 9 cut(s) 133, 213, 418, 419, 420, 675, 755, 756, 907
BsaWI WCCGGW 5 cut(s) 228, 258, 711, 841, 939
BsaXI ACNNNNNCTCC 2 cut(s) 473, 503
Bsc4I CCNNNNNNNGG 7 cut(s) 426, 530, 556, 644, 676, 725, 776
Bse118I RCCGGY 3 cut(s) 286, 841, 939
Bse1I ACTGG 1 cut(s) 431
BseBI CCWGG 5 cut(s) 135, 214, 493, 506, 771
BseDI CCNNGG 9 cut(s) 133, 213, 418, 419, 420, 675, 755, 756, 907
BseGI GGATG 4 cut(s) 209, 501, 526, 666
BseLI CCNNNNNNNGG 7 cut(s) 426, 530, 556, 644, 676, 725, 776
BseMII CTCAG 3 cut(s) 113, 316, 359
BseNI ACTGG 1 cut(s) 431
BseRI GAGGAG 2 cut(s) 156, 506
BseSI GKGCMC 2 cut(s) 418, 563
BseXI GCAGC 2 cut(s) 17, 508
Bsh1285I CGRYCG 2 cut(s) 121, 449
BshFI GGCC 9 cut(s) 219, 416, 662, 680, 702, 761, 783, 952, 960
BshNI GGYRCC 6 cut(s) 129, 261, 289, 560, 634, 692
BshTI ACCGGT 2 cut(s) 841, 939
BsiEI CGRYCG 2 cut(s) 121, 449
BsiHKCI CYCGRG 3 cut(s) 419, 674, 755
BslFI GGGAC 2 cut(s) 437, 465
BslI CCNNNNNNNGG 7 cut(s) 426, 530, 556, 644, 676, 725, 776
BsmAI GTCTC 3 cut(s) 156, 518, 601
BsmFI GGGAC 2 cut(s) 437, 465
BsnI GGCC 9 cut(s) 219, 416, 662, 680, 702, 761, 783, 952, 960
Bso31I GGTCTC 3 cut(s) 156, 518, 601
BsoBI CYCGRG 3 cut(s) 419, 674, 755
Bsp120I GGGCCC 1 cut(s) 414
Bsp1286I GDGCHC 2 cut(s) 418, 563
Bsp143I GATC 3 cut(s) 111, 538, 588
BspACI CCGC 2 cut(s) 121, 788
BspANI GGCC 9 cut(s) 219, 416, 662, 680, 702, 761, 783, 952, 960
BspCNI CTCAG 3 cut(s) 112, 315, 358
BspPI GGATC 1 cut(s) 106
BspT107I GGYRCC 6 cut(s) 129, 261, 289, 560, 634, 692
BspTNI GGTCTC 3 cut(s) 156, 518, 601
BsrFI RCCGGY 3 cut(s) 286, 841, 939
BsrI ACTGG 1 cut(s) 431
BssAI RCCGGY 3 cut(s) 286, 841, 939
BssECI CCNNGG 9 cut(s) 133, 213, 418, 419, 420, 675, 755, 756, 907
BssMI GATC 3 cut(s) 111, 538, 588
BssNAI GTATAC 1 cut(s) 465
BssSI CACGAG 4 cut(s) 518, 848, 883, 946
Bst1107I GTATAC 1 cut(s) 465
Bst2BI CACGAG 4 cut(s) 518, 848, 883, 946
Bst2UI CCWGG 5 cut(s) 135, 214, 493, 506, 771
Bst4CI ACNGT 2 cut(s) 385, 911
Bst6I CTCTTC 1 cut(s) 24
BstDEI CTNAG 4 cut(s) 99, 302, 345, 915
BstDSI CCRYGG 1 cut(s) 907
BstEII GGTNACC 1 cut(s) 137
BstENI CCTNNNNNAGG 2 cut(s) 674, 774
BstF5I GGATG 4 cut(s) 209, 501, 526, 666
BstKTI GATC 3 cut(s) 114, 541, 591
BstMAI GTCTC 3 cut(s) 156, 518, 601
BstMBI GATC 3 cut(s) 111, 538, 588
BstMCI CGRYCG 2 cut(s) 121, 449
BstMWI GCNNNNNNNGC 1 cut(s) 180
BstNI CCWGG 5 cut(s) 135, 214, 493, 506, 771
BstPI GGTNACC 1 cut(s) 137
BstSFI CTRYAG 1 cut(s) 954
BstSLI GKGCMC 2 cut(s) 418, 563
BstV1I GCAGC 2 cut(s) 17, 508
BstZ17I GTATAC 1 cut(s) 465
BsuI GTATCC 1 cut(s) 708
BsuRI GGCC 9 cut(s) 219, 416, 662, 680, 702, 761, 783, 952, 960
BtgI CCRYGG 1 cut(s) 907
BtrI CACGTC 1 cut(s) 684
BtsCI GGATG 4 cut(s) 209, 501, 526, 666
BtsI GCAGTG 1 cut(s) 196
BtsIMutI CAGTG 1 cut(s) 196
CaiI CAGNNNCTG 1 cut(s) 570
Cfr10I RCCGGY 3 cut(s) 286, 841, 939
Cfr13I GGNCC 5 cut(s) 217, 414, 415, 759, 959
Cfr9I CCCGGG 2 cut(s) 419, 755
CsiI ACCWGGT 1 cut(s) 769
Csp6I GTAC 7 cut(s) 262, 407, 635, 693, 845, 880, 943
CspAI ACCGGT 2 cut(s) 841, 939
CviAII CATG 1 cut(s) 105
CviQI GTAC 7 cut(s) 262, 407, 635, 693, 845, 880, 943
DdeI CTNAG 4 cut(s) 99, 302, 345, 915
DpnI GATC 3 cut(s) 113, 540, 590
DpnII GATC 3 cut(s) 111, 538, 588
EaeI YGGCCR 1 cut(s) 660
Eam1104I CTCTTC 1 cut(s) 24
EarI CTCTTC 1 cut(s) 24
Eco147I AGGCCT 2 cut(s) 783, 952
Eco24I GRGCYC 1 cut(s) 418
Eco31I GGTCTC 3 cut(s) 156, 518, 601
Eco88I CYCGRG 3 cut(s) 419, 674, 755
Eco91I GGTNACC 1 cut(s) 137
EcoNI CCTNNNNNAGG 2 cut(s) 674, 774
EcoO109I RGGNCCY 3 cut(s) 217, 415, 959
EcoO65I GGTNACC 1 cut(s) 137
EcoRII CCWGG 5 cut(s) 133, 212, 491, 504, 769
EcoT38I GRGCYC 1 cut(s) 418
FaeI CATG 1 cut(s) 108
FaiI YATR 7 cut(s) 63, 106, 110, 226, 465, 620, 966
FaqI GGGAC 2 cut(s) 437, 465
FatI CATG 1 cut(s) 104
FblI GTMKAC 1 cut(s) 464
Fnu4HI GCNGC 2 cut(s) 6, 497
FokI GGATG 4 cut(s) 196, 488, 513, 653
FriOI GRGCYC 1 cut(s) 418
Fsp4HI GCNGC 2 cut(s) 6, 497
FspBI CTAG 1 cut(s) 221
GluI GCNGC 2 cut(s) 6, 497
GsuI CTGGAG 1 cut(s) 475
HaeIII GGCC 9 cut(s) 219, 416, 662, 680, 702, 761, 783, 952, 960
Hin1II CATG 1 cut(s) 108
HinfI GANTC 3 cut(s) 97, 193, 567
Hpy166II GTNNAC 4 cut(s) 465, 847, 882, 945
Hpy188I TCNGA 4 cut(s) 69, 305, 390, 446
Hpy188III TCNNGA 2 cut(s) 23, 53
Hpy8I GTNNAC 4 cut(s) 465, 847, 882, 945
Hpy99I CGWCG 1 cut(s) 878
HpyAV CCTTC 4 cut(s) 312, 350, 503, 692
HpyCH4III ACNGT 2 cut(s) 385, 911
HpyCH4IV ACGT 1 cut(s) 683
HpyCH4V TGCA 1 cut(s) 573
HpyF10VI GCNNNNNNNGC 1 cut(s) 180
HpyF3I CTNAG 4 cut(s) 99, 302, 345, 915
HpySE526I ACGT 1 cut(s) 683
Hsp92II CATG 1 cut(s) 108
KpnI GGTACC 3 cut(s) 265, 638, 696
Kzo9I GATC 3 cut(s) 111, 538, 588
Lsp1109I GCAGC 2 cut(s) 17, 508
LweI GCATC 1 cut(s) 192
MabI ACCWGGT 1 cut(s) 769
MaeI CTAG 1 cut(s) 221
MaeII ACGT 1 cut(s) 683
MaeIII GTNAC 7 cut(s) 94, 137, 190, 359, 373, 647, 684
MalI GATC 3 cut(s) 113, 540, 590
MboI GATC 3 cut(s) 111, 538, 588
MboII GAAGA 3 cut(s) 11, 198, 533
MhlI GDGCHC 2 cut(s) 418, 563
MlyI GAGTC 3 cut(s) 91, 187, 576
MmeI TCCRAC 2 cut(s) 469, 562
MroXI GAANNNNTTC 1 cut(s) 322
MseI TTAA 2 cut(s) 336, 812
MslI CAYNNNNRTG 1 cut(s) 188
MvaI CCWGG 5 cut(s) 135, 214, 493, 506, 771
MwoI GCNNNNNNNGC 1 cut(s) 180
NciI CCSGG 9 cut(s) 171, 357, 420, 421, 450, 531, 690, 756, 757
NdeII GATC 3 cut(s) 111, 538, 588
NlaIII CATG 1 cut(s) 108
NmuCI GTSAC 6 cut(s) 94, 137, 190, 359, 373, 684
PceI AGGCCT 2 cut(s) 783, 952
PdmI GAANNNNTTC 1 cut(s) 322
PfoI TCCNGGA 2 cut(s) 504, 529
PinAI ACCGGT 2 cut(s) 841, 939
PkrI GCNGC 2 cut(s) 7, 498
PleI GAGTC 3 cut(s) 91, 187, 575
PpsI GAGTC 3 cut(s) 91, 187, 575
Psp6I CCWGG 5 cut(s) 133, 212, 491, 504, 769
PspEI GGTNACC 1 cut(s) 137
PspGI CCWGG 5 cut(s) 133, 212, 491, 504, 769
PspOMI GGGCCC 1 cut(s) 414
PspPI GGNCC 5 cut(s) 217, 414, 415, 759, 959
PsrI GAACNNNNNNTAC 2 cut(s) 837, 869
PstNI CAGNNNCTG 1 cut(s) 570
RsaI GTAC 7 cut(s) 263, 408, 636, 694, 846, 881, 944
RsaNI GTAC 7 cut(s) 262, 407, 635, 693, 845, 880, 943
RseI CAYNNNNRTG 1 cut(s) 188
SaqAI TTAA 2 cut(s) 336, 812
SatI GCNGC 2 cut(s) 6, 497
Sau3AI GATC 3 cut(s) 111, 538, 588
Sau96I GGNCC 5 cut(s) 217, 414, 415, 759, 959
ScaI AGTACT 1 cut(s) 408
SchI GAGTC 3 cut(s) 91, 187, 576
SduI GDGCHC 2 cut(s) 418, 563
SexAI ACCWGGT 1 cut(s) 769
SfaNI GCATC 1 cut(s) 192
SfcI CTRYAG 1 cut(s) 954
SmaI CCCGGG 2 cut(s) 421, 757
SmiMI CAYNNNNRTG 1 cut(s) 188
SmlI CTYRAG 1 cut(s) 921
SmoI CTYRAG 1 cut(s) 921
SseBI AGGCCT 2 cut(s) 783, 952
SsiI CCGC 2 cut(s) 121, 788
SspMI CTAG 1 cut(s) 221
StuI AGGCCT 2 cut(s) 783, 952
TaaI ACNGT 2 cut(s) 385, 911
TaiI ACGT 1 cut(s) 686
TaqI TCGA 3 cut(s) 316, 873, 891
TaqII GACCGA 2 cut(s) 361, 583
TatI WGTACW 1 cut(s) 406
Tru1I TTAA 2 cut(s) 336, 812
Tru9I TTAA 2 cut(s) 336, 812
TscAI CASTG 1 cut(s) 203
TseFI GTSAC 6 cut(s) 94, 137, 190, 359, 373, 684
TseI GCWGC 2 cut(s) 5, 496
Tsp45I GTSAC 6 cut(s) 94, 137, 190, 359, 373, 684
TspDTI ATGAA 3 cut(s) 198, 460, 475
TspMI CCCGGG 2 cut(s) 419, 755
TspRI CASTG 1 cut(s) 203
XagI CCTNNNNNAGG 2 cut(s) 674, 774
XmaI CCCGGG 2 cut(s) 419, 755
XmiI GTMKAC 1 cut(s) 464
XmnI GAANNNNTTC 1 cut(s) 322
XspI CTAG 1 cut(s) 221
ZrmI AGTACT 1 cut(s) 408
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.