Rh5DG521900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0002282
Physical Location & Seq
Forward (+)
80983233 .. 80992509
9277 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG521900.1

Sequence Viewer

Length: 234 bp
ATGCCGAGTTCACCACCATCTCCGTGGGACAAGGAATGGACGACCATTGACAAGGCGGTTGGGGATAGAGATCTCGGCGTCTCCGCACCAGAACTAGAAGGGCATGATGATCAAGAAGCAGTGCGCCTCGATCCCCGATGCGATGAGGCGTTACCACATGCACAGGCCGACATCTCTGAACATCGTACTCTGTCACACTCCGAGCTTCCAAGCAAAAATGGGTGGAAAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

77

Amino Acids

8.56

Weight (kDa)

4.65

Isoelectric Point (pI)

47.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 56, 84
AclWI GGATC 1 cut(s) 125
AcyI GRCGYC 1 cut(s) 78
AfaI GTAC 1 cut(s) 187
AluBI AGCT 1 cut(s) 205
AluI AGCT 1 cut(s) 205
Alw26I GTCTC 1 cut(s) 85
AlwI GGATC 1 cut(s) 125
AoxI GGCC 1 cut(s) 165
AspLEI GCGC 1 cut(s) 126
AsuHPI GGTGA 1 cut(s) 3
BccI CCATC 1 cut(s) 25
BclI TGATCA 1 cut(s) 109
BcoDI GTCTC 1 cut(s) 85
BfaI CTAG 1 cut(s) 95
BglII AGATCT 1 cut(s) 70
BmsI GCATC 1 cut(s) 128
BsaBI GATNNNNATC 1 cut(s) 69
BsaHI GRCGYC 1 cut(s) 78
BsaJI CCNNGG 1 cut(s) 23
Bse8I GATNNNNATC 1 cut(s) 69
BseDI CCNNGG 1 cut(s) 23
BseJI GATNNNNATC 1 cut(s) 69
BshFI GGCC 1 cut(s) 167
BslFI GGGAC 1 cut(s) 41
BsmAI GTCTC 1 cut(s) 85
BsmBI CGTCTC 1 cut(s) 85
BsmFI GGGAC 1 cut(s) 41
BsnI GGCC 1 cut(s) 167
Bsp143I GATC 3 cut(s) 70, 109, 130
BspACI CCGC 2 cut(s) 56, 84
BspANI GGCC 1 cut(s) 167
BspPI GGATC 1 cut(s) 125
BssECI CCNNGG 1 cut(s) 23
BssMI GATC 3 cut(s) 70, 109, 130
BssNI GRCGYC 1 cut(s) 78
BstACI GRCGYC 1 cut(s) 78
BstDSI CCRYGG 1 cut(s) 23
BstHHI GCGC 1 cut(s) 126
BstKTI GATC 3 cut(s) 73, 112, 133
BstMAI GTCTC 1 cut(s) 85
BstMBI GATC 3 cut(s) 70, 109, 130
BstNSI RCATGY 1 cut(s) 161
BstX2I RGATCY 1 cut(s) 70
BstXI CCANNNNNNTGG 1 cut(s) 24
BstYI RGATCY 1 cut(s) 70
BsuRI GGCC 1 cut(s) 167
BtgI CCRYGG 1 cut(s) 23
BtgZI GCGATG 1 cut(s) 156
BtsI GCAGTG 1 cut(s) 126
BtsIMutI CAGTG 1 cut(s) 126
CfoI GCGC 1 cut(s) 126
CseI GACGC 1 cut(s) 67
Csp6I GTAC 1 cut(s) 186
CviAII CATG 2 cut(s) 104, 158
CviJI RGCY 2 cut(s) 167, 205
CviKI_1 RGCY 2 cut(s) 167, 205
CviQI GTAC 1 cut(s) 186
DpnI GATC 3 cut(s) 72, 111, 132
DpnII GATC 3 cut(s) 70, 109, 130
Esp3I CGTCTC 1 cut(s) 85
FaeI CATG 2 cut(s) 107, 161
FaiI YATR 2 cut(s) 105, 159
FaqI GGGAC 1 cut(s) 41
FatI CATG 2 cut(s) 103, 157
FbaI TGATCA 1 cut(s) 109
FspBI CTAG 1 cut(s) 95
GlaI GCGC 1 cut(s) 125
HaeIII GGCC 1 cut(s) 167
HgaI GACGC 1 cut(s) 67
HhaI GCGC 1 cut(s) 126
Hin1I GRCGYC 1 cut(s) 78
Hin1II CATG 2 cut(s) 107, 161
Hin6I GCGC 1 cut(s) 124
HinP1I GCGC 1 cut(s) 124
HphI GGTGA 1 cut(s) 3
Hpy166II GTNNAC 1 cut(s) 11
Hpy188I TCNGA 2 cut(s) 178, 202
Hpy188III TCNNGA 1 cut(s) 113
Hpy8I GTNNAC 1 cut(s) 11
HpyAV CCTTC 1 cut(s) 92
HpyCH4V TGCA 1 cut(s) 161
Hsp92I GRCGYC 1 cut(s) 78
Hsp92II CATG 2 cut(s) 107, 161
HspAI GCGC 1 cut(s) 124
Ksp22I TGATCA 1 cut(s) 109
Kzo9I GATC 3 cut(s) 70, 109, 130
LpnPI CCDG 2 cut(s) 102, 149
LweI GCATC 1 cut(s) 128
MaeI CTAG 1 cut(s) 95
MaeIII GTNAC 2 cut(s) 150, 192
MalI GATC 3 cut(s) 72, 111, 132
MboI GATC 3 cut(s) 70, 109, 130
MflI RGATCY 1 cut(s) 70
MnlI CCTC 2 cut(s) 137, 139
MslI CAYNNNNRTG 1 cut(s) 22
NdeII GATC 3 cut(s) 70, 109, 130
NlaIII CATG 2 cut(s) 107, 161
NmeAIII GCCGAG 2 cut(s) 30, 54
NmuCI GTSAC 1 cut(s) 192
NspI RCATGY 1 cut(s) 161
PsuI RGATCY 1 cut(s) 70
RsaI GTAC 1 cut(s) 187
RsaNI GTAC 1 cut(s) 186
RseI CAYNNNNRTG 1 cut(s) 22
Sau3AI GATC 3 cut(s) 70, 109, 130
SetI ASST 1 cut(s) 207
SfaNI GCATC 1 cut(s) 128
SmiMI CAYNNNNRTG 1 cut(s) 22
SsiI CCGC 2 cut(s) 56, 84
SspMI CTAG 1 cut(s) 95
TaqI TCGA 1 cut(s) 129
TscAI CASTG 1 cut(s) 126
TseFI GTSAC 1 cut(s) 192
Tsp45I GTSAC 1 cut(s) 192
TspGWI ACGGA 1 cut(s) 12
TspRI CASTG 1 cut(s) 126
XceI RCATGY 1 cut(s) 161
XcmI CCANNNNNNNNNTGG 1 cut(s) 21
XspI CTAG 1 cut(s) 95
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.