Rroxscaffold_4G00303680

Belongs to the iron ascorbate-dependent oxidoreductase family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
Physical Location & Seq
Reverse (-)
24067571 .. 24073970
6400 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00303680.1

Sequence Viewer

Length: 462 bp
ATGAGTTCTAACAATTGGTTACGTTGCACTAAAGGAAAGTATTCAGCCCCAGCTGAAACTTCACGGCCATCCCTTTGCATCAATTTGTCTCTTAAACCAAAACGAGTCTTGGGAATTCTGTCTCATAATCTCTCACACTCCTATCATCTTGAGTTAGCTCTGTGCAATGGGATGTACAAGAGCTGCTTCCACAGGGCTGTGGTAAACAACAAAACTGTAAGGAAATCTCTTGCTTTCTTTCTCAATCCAAACAAGAAGGAAAGATTATTCAGCACTTTCCAACCTTTATCCATACATCCAGCCCCCATTCCCAACCTCAAGAATTTCCATCGAATCAACCTCCGTTGGATTAATCTCAAGGAAATAGACCATTCTCCTGCGTTCCTGTCTTGTATGTGCGTTAAACATGATTTGAGTTCTCACAAGAAACATGTGACATCAACCTGTCATGTATGTGTGTGA

Protein Analysis

153

Amino Acids

17.49

Weight (kDa)

9.93

Isoelectric Point (pI)

53.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 65
AcsI RAATTY 2 cut(s) 114, 322
AfaI GTAC 1 cut(s) 176
AflIII ACRYGT 1 cut(s) 430
AluBI AGCT 3 cut(s) 53, 158, 183
AluI AGCT 3 cut(s) 53, 158, 183
Alw26I GTCTC 2 cut(s) 93, 126
AoxI GGCC 1 cut(s) 65
ApeKI GCWGC 1 cut(s) 183
ApoI RAATTY 2 cut(s) 114, 322
AseI ATTAAT 1 cut(s) 351
Asp700I GAANNNNTTC 1 cut(s) 40
BbvI GCAGC 1 cut(s) 170
BccI CCATC 2 cut(s) 76, 336
BceAI ACGGC 1 cut(s) 80
BcoDI GTCTC 2 cut(s) 93, 126
BisI GCNGC 1 cut(s) 184
BlsI GCNGC 1 cut(s) 185
BmsI GCATC 1 cut(s) 87
BpuEI CTTGAG 3 cut(s) 170, 302, 341
Bse3DI GCAATG 1 cut(s) 172
BseGI GGATG 3 cut(s) 68, 177, 295
BseMI GCAATG 1 cut(s) 172
BseXI GCAGC 1 cut(s) 170
BseYI CCCAGC 1 cut(s) 49
BshFI GGCC 1 cut(s) 67
BsmAI GTCTC 2 cut(s) 93, 126
BsnI GGCC 1 cut(s) 67
Bsp1407I TGTACA 1 cut(s) 174
BspANI GGCC 1 cut(s) 67
BsrDI GCAATG 1 cut(s) 172
BsrGI TGTACA 1 cut(s) 174
Bst4CI ACNGT 1 cut(s) 217
BstAUI TGTACA 1 cut(s) 174
BstF5I GGATG 3 cut(s) 68, 177, 295
BstMAI GTCTC 2 cut(s) 93, 126
BstNSI RCATGY 1 cut(s) 434
BstV1I GCAGC 1 cut(s) 170
BsuRI GGCC 1 cut(s) 67
BtsCI GGATG 3 cut(s) 68, 177, 295
Csp6I GTAC 1 cut(s) 175
CviAII CATG 3 cut(s) 407, 431, 449
CviJI RGCY 7 cut(s) 47, 53, 67, 158, 183, 197, 302
CviKI_1 RGCY 7 cut(s) 47, 53, 67, 158, 183, 197, 302
CviQI GTAC 1 cut(s) 175
EaeI YGGCCR 1 cut(s) 65
EcoRI GAATTC 1 cut(s) 114
FaeI CATG 3 cut(s) 410, 434, 452
FaiI YATR 7 cut(s) 126, 293, 395, 408, 432, 450, 454
FalI AAGNNNNNCTT 2 cut(s) 170, 202
FatI CATG 3 cut(s) 406, 430, 448
Fnu4HI GCNGC 1 cut(s) 184
FokI GGATG 3 cut(s) 55, 184, 282
Fsp4HI GCNGC 1 cut(s) 184
GluI GCNGC 1 cut(s) 184
GsaI CCCAGC 1 cut(s) 53
HaeIII GGCC 1 cut(s) 67
Hin1II CATG 3 cut(s) 410, 434, 452
HinfI GANTC 2 cut(s) 105, 333
Hpy166II GTNNAC 1 cut(s) 205
Hpy188III TCNNGA 2 cut(s) 149, 319
Hpy8I GTNNAC 1 cut(s) 205
HpyAV CCTTC 1 cut(s) 250
HpyCH4III ACNGT 1 cut(s) 217
HpyCH4IV ACGT 1 cut(s) 22
HpyCH4V TGCA 3 cut(s) 27, 78, 165
HpySE526I ACGT 1 cut(s) 22
Hsp92II CATG 3 cut(s) 410, 434, 452
LpnPI CCDG 6 cut(s) 63, 178, 312, 390, 398, 457
Lsp1109I GCAGC 1 cut(s) 170
LweI GCATC 1 cut(s) 87
MaeII ACGT 1 cut(s) 22
MaeIII GTNAC 2 cut(s) 18, 433
MfeI CAATTG 1 cut(s) 13
MluCI AATT 4 cut(s) 13, 82, 114, 322
MlyI GAGTC 1 cut(s) 114
MmeI TCCRAC 2 cut(s) 304, 326
MnlI CCTC 2 cut(s) 326, 350
MroXI GAANNNNTTC 1 cut(s) 40
MseI TTAA 3 cut(s) 93, 351, 402
MslI CAYNNNNRTG 1 cut(s) 453
MspA1I CMGCKG 1 cut(s) 53
MunI CAATTG 1 cut(s) 13
NlaIII CATG 3 cut(s) 410, 434, 452
NmuCI GTSAC 1 cut(s) 433
NspI RCATGY 1 cut(s) 434
PciI ACATGT 1 cut(s) 430
PdmI GAANNNNTTC 1 cut(s) 40
PfeI GAWTC 1 cut(s) 333
PkrI GCNGC 1 cut(s) 185
PleI GAGTC 1 cut(s) 113
PpsI GAGTC 1 cut(s) 113
PscI ACATGT 1 cut(s) 430
PshBI ATTAAT 1 cut(s) 351
PspFI CCCAGC 1 cut(s) 49
PvuII CAGCTG 1 cut(s) 53
RsaI GTAC 1 cut(s) 176
RsaNI GTAC 1 cut(s) 175
RseI CAYNNNNRTG 1 cut(s) 453
SaqAI TTAA 3 cut(s) 93, 351, 402
SatI GCNGC 1 cut(s) 184
SchI GAGTC 1 cut(s) 114
SetI ASST 8 cut(s) 25, 55, 160, 185, 286, 318, 342, 446
SfaNI GCATC 1 cut(s) 87
SmiMI CAYNNNNRTG 1 cut(s) 453
SmlI CTYRAG 3 cut(s) 149, 317, 356
SmoI CTYRAG 3 cut(s) 149, 317, 356
Sse9I AATT 4 cut(s) 13, 82, 114, 322
TaaI ACNGT 1 cut(s) 217
TaiI ACGT 1 cut(s) 25
TaqI TCGA 1 cut(s) 331
TasI AATT 4 cut(s) 13, 82, 114, 322
TatI WGTACW 1 cut(s) 174
TfiI GAWTC 1 cut(s) 333
Tru1I TTAA 3 cut(s) 93, 351, 402
Tru9I TTAA 3 cut(s) 93, 351, 402
TseFI GTSAC 1 cut(s) 433
TseI GCWGC 1 cut(s) 183
Tsp45I GTSAC 1 cut(s) 433
TspGWI ACGGA 1 cut(s) 332
VspI ATTAAT 1 cut(s) 351
XapI RAATTY 2 cut(s) 114, 322
XceI RCATGY 1 cut(s) 434
XmnI GAANNNNTTC 1 cut(s) 40
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.