Rh6BG265900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0002282
Physical Location & Seq
Forward (+)
48128648 .. 48129269
622 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG265900.1

Sequence Viewer

Length: 261 bp
ATGATGAGTTCACCACTATCTCCACTGGATGAGGAATGGACCGCGATTGATAAGGCGGCGGTTGGGGATAGAGATCTCGGTGTCCCCATACCAGAACCAGAAGGGCATAATGATAGAGAAGCAGCGCGGAGAGAAAAAGAAGAAAAGTCGGCCATGGTGATTGCGAATGTGAGAAGGAGAATGAGAAGCGAGATTGATGAAGCCGTCTTCACCATTCCTTTGATTCTTATAAATGACCAAAGCCCAAAGCTTAGCAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

86

Amino Acids

9.65

Weight (kDa)

4.82

Isoelectric Point (pI)

78.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 230
AccII CGCG 2 cut(s) 44, 127
AciI CCGC 4 cut(s) 42, 56, 59, 127
AcoI YGGCCR 1 cut(s) 150
AluBI AGCT 1 cut(s) 250
AluI AGCT 1 cut(s) 250
AoxI GGCC 1 cut(s) 150
ApeKI GCWGC 1 cut(s) 122
AspLEI GCGC 1 cut(s) 127
AspS9I GGNCC 1 cut(s) 39
AsuHPI GGTGA 3 cut(s) 3, 169, 202
AvaII GGWCC 1 cut(s) 39
BbsI GAAGAC 1 cut(s) 199
BbvI GCAGC 1 cut(s) 134
BceAI ACGGC 1 cut(s) 188
BglII AGATCT 1 cut(s) 73
BisI GCNGC 2 cut(s) 57, 123
BlpI GCTNAGC 1 cut(s) 251
BlsI GCNGC 2 cut(s) 58, 124
Bme18I GGWCC 1 cut(s) 39
BmgT120I GGNCC 1 cut(s) 39
BpiI GAAGAC 1 cut(s) 199
Bpu1102I GCTNAGC 1 cut(s) 251
BsaBI GATNNNNATC 1 cut(s) 72
BsaJI CCNNGG 1 cut(s) 153
Bse1I ACTGG 1 cut(s) 30
Bse8I GATNNNNATC 1 cut(s) 72
BseDI CCNNGG 1 cut(s) 153
BseGI GGATG 1 cut(s) 34
BseJI GATNNNNATC 1 cut(s) 72
BseNI ACTGG 1 cut(s) 30
BseXI GCAGC 1 cut(s) 134
Bsh1236I CGCG 2 cut(s) 44, 127
BshFI GGCC 1 cut(s) 152
BslFI GGGAC 1 cut(s) 68
BsmFI GGGAC 1 cut(s) 68
BsnI GGCC 1 cut(s) 152
Bsp143I GATC 1 cut(s) 73
Bsp1720I GCTNAGC 1 cut(s) 251
Bsp19I CCATGG 1 cut(s) 153
BspACI CCGC 4 cut(s) 42, 56, 59, 127
BspANI GGCC 1 cut(s) 152
BspFNI CGCG 2 cut(s) 44, 127
BsrI ACTGG 1 cut(s) 30
BssECI CCNNGG 1 cut(s) 153
BssMI GATC 1 cut(s) 73
BssT1I CCWWGG 1 cut(s) 153
BstDEI CTNAG 1 cut(s) 251
BstDSI CCRYGG 1 cut(s) 153
BstF5I GGATG 1 cut(s) 34
BstFNI CGCG 2 cut(s) 44, 127
BstHHI GCGC 1 cut(s) 127
BstKTI GATC 1 cut(s) 76
BstMBI GATC 1 cut(s) 73
BstUI CGCG 2 cut(s) 44, 127
BstV1I GCAGC 1 cut(s) 134
BstV2I GAAGAC 1 cut(s) 199
BstX2I RGATCY 1 cut(s) 73
BstYI RGATCY 1 cut(s) 73
BsuRI GGCC 1 cut(s) 152
BtgI CCRYGG 1 cut(s) 153
BtsCI GGATG 1 cut(s) 34
BtsIMutI CAGTG 1 cut(s) 23
CfoI GCGC 1 cut(s) 127
Cfr13I GGNCC 1 cut(s) 39
CviAII CATG 1 cut(s) 154
CviJI RGCY 4 cut(s) 152, 203, 243, 250
CviKI_1 RGCY 4 cut(s) 152, 203, 243, 250
DdeI CTNAG 1 cut(s) 251
DpnI GATC 1 cut(s) 75
DpnII GATC 1 cut(s) 73
EaeI YGGCCR 1 cut(s) 150
Eco130I CCWWGG 1 cut(s) 153
Eco47I GGWCC 1 cut(s) 39
EcoT14I CCWWGG 1 cut(s) 153
ErhI CCWWGG 1 cut(s) 153
FaeI CATG 1 cut(s) 157
FaiI YATR 4 cut(s) 89, 108, 155, 230
FaqI GGGAC 1 cut(s) 68
FatI CATG 1 cut(s) 153
Fnu4HI GCNGC 2 cut(s) 57, 123
FokI GGATG 1 cut(s) 41
Fsp4HI GCNGC 2 cut(s) 57, 123
GlaI GCGC 1 cut(s) 126
GluI GCNGC 2 cut(s) 57, 123
HaeIII GGCC 1 cut(s) 152
HhaI GCGC 1 cut(s) 127
Hin1II CATG 1 cut(s) 157
Hin6I GCGC 1 cut(s) 125
HinP1I GCGC 1 cut(s) 125
HindIII AAGCTT 1 cut(s) 248
HinfI GANTC 1 cut(s) 223
HphI GGTGA 3 cut(s) 3, 169, 202
Hpy166II GTNNAC 1 cut(s) 11
Hpy8I GTNNAC 1 cut(s) 11
HpyAV CCTTC 2 cut(s) 95, 168
HpyF3I CTNAG 1 cut(s) 251
Hsp92II CATG 1 cut(s) 157
HspAI GCGC 1 cut(s) 125
Kzo9I GATC 1 cut(s) 73
LpnPI CCDG 3 cut(s) 11, 105, 111
Lsp1109I GCAGC 1 cut(s) 134
MalI GATC 1 cut(s) 75
MboI GATC 1 cut(s) 73
MboII GAAGA 2 cut(s) 152, 199
MflI RGATCY 1 cut(s) 73
MnlI CCTC 1 cut(s) 25
MvnI CGCG 2 cut(s) 44, 127
NcoI CCATGG 1 cut(s) 153
NdeII GATC 1 cut(s) 73
NlaIII CATG 1 cut(s) 157
PfeI GAWTC 1 cut(s) 223
PkrI GCNGC 2 cut(s) 58, 124
PsiI TTATAA 1 cut(s) 230
PspPI GGNCC 1 cut(s) 39
PsuI RGATCY 1 cut(s) 73
SatI GCNGC 2 cut(s) 57, 123
Sau3AI GATC 1 cut(s) 73
Sau96I GGNCC 1 cut(s) 39
SetI ASST 1 cut(s) 252
SgeI CNNG 8 cut(s) 38, 55, 89, 104, 110, 138, 166, 202
SinI GGWCC 1 cut(s) 39
SsiI CCGC 4 cut(s) 42, 56, 59, 127
StyI CCWWGG 1 cut(s) 153
TauI GCSGC 1 cut(s) 59
TfiI GAWTC 1 cut(s) 223
TscAI CASTG 1 cut(s) 30
TseI GCWGC 1 cut(s) 122
TspDTI ATGAA 1 cut(s) 213
TspRI CASTG 1 cut(s) 30
VpaK11BI GGWCC 1 cut(s) 39
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.