Rroxscaffold_7G00201810

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0002282
Physical Location & Seq
Reverse (-)
49621722 .. 49627243
5522 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00201810.1

Sequence Viewer

Length: 168 bp
ATGGCTAGCCCCGCCTATGGCATGCATCCGGTAGGCCGACATCCGAGCTACATTGCCATGGTGGAGGTCGGCCGGTATCTAGTCGGGAGGCCACCCTCCCATGCTCTCCAAGAGGCTTCAAGAGAAGCAAATATATGTATTATGTCCCACATCGGAAATGTAAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

55

Amino Acids

5.97

Weight (kDa)

8.02

Isoelectric Point (pI)

81.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 12
AcoI YGGCCR 1 cut(s) 70
AfiI CCNNNNNNNGG 1 cut(s) 17
AgsI TTSAA 1 cut(s) 120
AluBI AGCT 1 cut(s) 48
AluI AGCT 1 cut(s) 48
AoxI GGCC 3 cut(s) 34, 70, 89
AsuNHI GCTAGC 1 cut(s) 5
BfaI CTAG 3 cut(s) 6, 80, 166
BmsI GCATC 1 cut(s) 34
BmtI GCTAGC 1 cut(s) 9
BsaJI CCNNGG 1 cut(s) 57
BsaWI WCCGGW 1 cut(s) 28
Bsc4I CCNNNNNNNGG 1 cut(s) 17
Bse118I RCCGGY 1 cut(s) 72
Bse3DI GCAATG 1 cut(s) 51
BseDI CCNNGG 1 cut(s) 57
BseGI GGATG 2 cut(s) 25, 40
BseLI CCNNNNNNNGG 1 cut(s) 17
BseMI GCAATG 1 cut(s) 51
BseX3I CGGCCG 1 cut(s) 70
Bsh1285I CGRYCG 1 cut(s) 73
BshFI GGCC 3 cut(s) 36, 72, 91
BsiEI CGRYCG 1 cut(s) 73
BsiSI CCGG 2 cut(s) 29, 73
BslFI GGGAC 1 cut(s) 130
BslI CCNNNNNNNGG 1 cut(s) 17
BsmFI GGGAC 1 cut(s) 130
BsnI GGCC 3 cut(s) 36, 72, 91
Bsp19I CCATGG 1 cut(s) 57
BspACI CCGC 1 cut(s) 12
BspANI GGCC 3 cut(s) 36, 72, 91
BspOI GCTAGC 1 cut(s) 9
BsrDI GCAATG 1 cut(s) 51
BsrFI RCCGGY 1 cut(s) 72
BssAI RCCGGY 1 cut(s) 72
BssECI CCNNGG 1 cut(s) 57
BssT1I CCWWGG 1 cut(s) 57
BstC8I GCNNGC 2 cut(s) 7, 23
BstDSI CCRYGG 1 cut(s) 57
BstF5I GGATG 2 cut(s) 25, 40
BstMCI CGRYCG 1 cut(s) 73
BstMWI GCNNNNNNNGC 1 cut(s) 11
BstNSI RCATGY 1 cut(s) 25
BstZI CGGCCG 1 cut(s) 70
BsuRI GGCC 3 cut(s) 36, 72, 91
BtgI CCRYGG 1 cut(s) 57
BtsCI GGATG 2 cut(s) 25, 40
Cac8I GCNNGC 2 cut(s) 7, 23
Cfr10I RCCGGY 1 cut(s) 72
CviAII CATG 3 cut(s) 22, 58, 101
CviJI RGCY 7 cut(s) 5, 9, 36, 48, 72, 91, 116
CviKI_1 RGCY 7 cut(s) 5, 9, 36, 48, 72, 91, 116
EaeI YGGCCR 1 cut(s) 70
EagI CGGCCG 1 cut(s) 70
EclXI CGGCCG 1 cut(s) 70
Eco130I CCWWGG 1 cut(s) 57
Eco52I CGGCCG 1 cut(s) 70
EcoT14I CCWWGG 1 cut(s) 57
EcoT22I ATGCAT 1 cut(s) 27
ErhI CCWWGG 1 cut(s) 57
FaeI CATG 3 cut(s) 25, 61, 104
FaiI YATR 7 cut(s) 18, 23, 59, 102, 134, 136, 143
FaqI GGGAC 1 cut(s) 130
FatI CATG 3 cut(s) 21, 57, 100
FauI CCCGC 1 cut(s) 19
FokI GGATG 2 cut(s) 12, 27
FspBI CTAG 3 cut(s) 6, 80, 166
HaeIII GGCC 3 cut(s) 36, 72, 91
HapII CCGG 2 cut(s) 29, 73
Hin1II CATG 3 cut(s) 25, 61, 104
HpaII CCGG 2 cut(s) 29, 73
Hpy166II GTNNAC 1 cut(s) 163
Hpy188I TCNGA 2 cut(s) 45, 155
Hpy188III TCNNGA 2 cut(s) 85, 120
Hpy8I GTNNAC 1 cut(s) 163
HpyCH4V TGCA 1 cut(s) 25
HpyF10VI GCNNNNNNNGC 1 cut(s) 11
Hsp92II CATG 3 cut(s) 25, 61, 104
LpnPI CCDG 2 cut(s) 42, 86
LweI GCATC 1 cut(s) 34
MaeI CTAG 3 cut(s) 6, 80, 166
MnlI CCTC 4 cut(s) 58, 81, 106, 106
Mph1103I ATGCAT 1 cut(s) 27
MslI CAYNNNNRTG 1 cut(s) 56
MspI CCGG 2 cut(s) 29, 73
MwoI GCNNNNNNNGC 1 cut(s) 11
NcoI CCATGG 1 cut(s) 57
NheI GCTAGC 1 cut(s) 5
NlaIII CATG 3 cut(s) 25, 61, 104
NsiI ATGCAT 1 cut(s) 27
NspI RCATGY 1 cut(s) 25
PaeI GCATGC 1 cut(s) 25
RseI CAYNNNNRTG 1 cut(s) 56
SetI ASST 2 cut(s) 50, 69
SfaNI GCATC 1 cut(s) 34
SmiMI CAYNNNNRTG 1 cut(s) 56
SphI GCATGC 1 cut(s) 25
SsiI CCGC 1 cut(s) 12
SspMI CTAG 3 cut(s) 6, 80, 166
StyI CCWWGG 1 cut(s) 57
XceI RCATGY 1 cut(s) 25
XspI CTAG 3 cut(s) 6, 80, 166
Zsp2I ATGCAT 1 cut(s) 27
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.