Rroxscaffold_2G00119630

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0002282
Physical Location & Seq
Forward (+)
51557665 .. 51564052
6388 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00119630.1

Sequence Viewer

Length: 567 bp
ATGAAGCGCCACTACGCCGATCTCACTGATGCCTTATTGCCCGCTGCTAGCTCGATACAATCGCCCCCGACGAGGTCTACAACCTCGCCACCCAGTCGCACATTGCCGTTTCTTTCAAGATCCATGACTACACTGCTGACATCGTTGCCACTAAAGCGCTCTACCTCTTTGAAGCCATCAGAAACCATGTCGACGCCACTGGAACGACCAATGTTAAGTACTACCAGGCAGGGTCATTTGAGATGTTTGGGGTCACCTTGCCACCGCAGTCCAAGACGACATCGTTGTAGATACCACTTATATTACATACCGCCAAGCATAAACAACGACCGTGTAGGTGGTTCCTGTGACATGACTAGCCCGGCTCATGGCATGCATCCGGTAGACCGACACTTGAGCTACATCGCCATGGTGGAGAGAGAATCTTGCGTGGGGCAACCGCACGGCCATGTGGTCGAGGCGAAACAAATCACTGCCCAACAGGGGAGGATGTTTTGGGTATTGCACTTTAAGGAGCAAAGACAATTTCAGAAAAGAGAGAAAAATTTCTTTCTTCTAATTGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

188

Amino Acids

21.42

Weight (kDa)

10.28

Isoelectric Point (pI)

78.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 3 cut(s) 77, 191, 384
AciI CCGC 4 cut(s) 42, 265, 311, 440
AclWI GGATC 1 cut(s) 114
AcoI YGGCCR 1 cut(s) 445
AcsI RAATTY 1 cut(s) 544
AcyI GRCGYC 1 cut(s) 194
AfaI GTAC 1 cut(s) 220
AfeI AGCGCT 1 cut(s) 158
AfiI CCNNNNNNNGG 3 cut(s) 72, 368, 483
AgsI TTSAA 2 cut(s) 117, 172
AjnI CCWGG 1 cut(s) 224
AluBI AGCT 2 cut(s) 51, 399
AluI AGCT 2 cut(s) 51, 399
AlwI GGATC 1 cut(s) 114
Aor51HI AGCGCT 1 cut(s) 158
AoxI GGCC 1 cut(s) 445
ApeKI GCWGC 1 cut(s) 44
ApoI RAATTY 1 cut(s) 544
Asp700I GAANNNNTTC 1 cut(s) 545
AspLEI GCGC 2 cut(s) 9, 159
AsuC2I CCSGG 1 cut(s) 362
AsuHPI GGTGA 1 cut(s) 246
AsuNHI GCTAGC 1 cut(s) 47
BarI GAAGNNNNNNTAC 1 cut(s) 28
BbvI GCAGC 1 cut(s) 31
BccI CCATC 1 cut(s) 184
BceAI ACGGC 2 cut(s) 91, 460
BciT130I CCWGG 1 cut(s) 226
BcnI CCSGG 1 cut(s) 362
BfaI CTAG 2 cut(s) 48, 357
BfoI RGCGCY 2 cut(s) 10, 160
BisI GCNGC 1 cut(s) 45
BlsI GCNGC 1 cut(s) 46
BmcAI AGTACT 1 cut(s) 220
Bme1390I CCNGG 2 cut(s) 226, 362
BmiI GGNNCC 1 cut(s) 343
BmrFI CCNGG 2 cut(s) 226, 362
BmrI ACTGGG 1 cut(s) 87
BmsI GCATC 2 cut(s) 19, 385
BmtI GCTAGC 1 cut(s) 51
BmuI ACTGGG 1 cut(s) 87
BpuEI CTTGAG 1 cut(s) 415
BpuMI CCSGG 1 cut(s) 362
BsaHI GRCGYC 1 cut(s) 194
BsaJI CCNNGG 1 cut(s) 408
BsaWI WCCGGW 1 cut(s) 379
Bsc4I CCNNNNNNNGG 3 cut(s) 72, 368, 483
Bse1I ACTGG 2 cut(s) 93, 204
Bse3DI GCAATG 1 cut(s) 101
BseBI CCWGG 1 cut(s) 226
BseDI CCNNGG 1 cut(s) 408
BseGI GGATG 2 cut(s) 376, 495
BseLI CCNNNNNNNGG 3 cut(s) 72, 368, 483
BseMI GCAATG 1 cut(s) 101
BseNI ACTGG 2 cut(s) 93, 204
BseXI GCAGC 1 cut(s) 31
Bsh1285I CGRYCG 1 cut(s) 331
BshFI GGCC 1 cut(s) 447
BsiEI CGRYCG 1 cut(s) 331
BsiSI CCGG 2 cut(s) 362, 380
BslI CCNNNNNNNGG 3 cut(s) 72, 368, 483
BsnI GGCC 1 cut(s) 447
Bsp143I GATC 2 cut(s) 19, 119
Bsp19I CCATGG 1 cut(s) 408
BspACI CCGC 4 cut(s) 42, 265, 311, 440
BspANI GGCC 1 cut(s) 447
BspLI GGNNCC 1 cut(s) 343
BspOI GCTAGC 1 cut(s) 51
BspPI GGATC 1 cut(s) 114
BsrDI GCAATG 1 cut(s) 101
BsrI ACTGG 2 cut(s) 93, 204
BssECI CCNNGG 1 cut(s) 408
BssMI GATC 2 cut(s) 19, 119
BssNI GRCGYC 1 cut(s) 194
BssT1I CCWWGG 1 cut(s) 408
Bst2UI CCWGG 1 cut(s) 226
Bst4CI ACNGT 1 cut(s) 332
BstACI GRCGYC 1 cut(s) 194
BstC8I GCNNGC 3 cut(s) 42, 49, 374
BstDSI CCRYGG 1 cut(s) 408
BstEII GGTNACC 1 cut(s) 252
BstF5I GGATG 2 cut(s) 376, 495
BstH2I RGCGCY 2 cut(s) 10, 160
BstHHI GCGC 2 cut(s) 9, 159
BstKTI GATC 2 cut(s) 22, 122
BstMBI GATC 2 cut(s) 19, 119
BstMCI CGRYCG 1 cut(s) 331
BstMWI GCNNNNNNNGC 1 cut(s) 154
BstNI CCWGG 1 cut(s) 226
BstNSI RCATGY 1 cut(s) 376
BstPI GGTNACC 1 cut(s) 252
BstSCI CCNGG 2 cut(s) 224, 360
BstV1I GCAGC 1 cut(s) 31
BstX2I RGATCY 1 cut(s) 119
BstYI RGATCY 1 cut(s) 119
BsuRI GGCC 1 cut(s) 447
BtgI CCRYGG 1 cut(s) 408
BtgZI GCGATG 1 cut(s) 388
BtsCI GGATG 2 cut(s) 376, 495
BtsI GCAGTG 2 cut(s) 131, 471
BtsIMutI CAGTG 4 cut(s) 24, 131, 197, 471
Cac8I GCNNGC 3 cut(s) 42, 49, 374
CfoI GCGC 2 cut(s) 9, 159
CseI GACGC 1 cut(s) 202
Csp6I GTAC 1 cut(s) 219
CviAII CATG 7 cut(s) 124, 187, 352, 368, 373, 409, 449
CviJI RGCY 6 cut(s) 51, 175, 360, 365, 399, 447
CviKI_1 RGCY 6 cut(s) 51, 175, 360, 365, 399, 447
CviQI GTAC 1 cut(s) 219
DpnI GATC 2 cut(s) 21, 121
DpnII GATC 2 cut(s) 19, 119
EaeI YGGCCR 1 cut(s) 445
Eco130I CCWWGG 1 cut(s) 408
Eco47III AGCGCT 1 cut(s) 158
Eco91I GGTNACC 1 cut(s) 252
EcoO65I GGTNACC 1 cut(s) 252
EcoRII CCWGG 1 cut(s) 224
EcoT14I CCWWGG 1 cut(s) 408
EcoT22I ATGCAT 1 cut(s) 378
ErhI CCWWGG 1 cut(s) 408
FaeI CATG 7 cut(s) 127, 190, 355, 371, 376, 412, 452
FatI CATG 7 cut(s) 123, 186, 351, 367, 372, 408, 448
FauI CCCGC 1 cut(s) 49
FblI GTMKAC 3 cut(s) 77, 191, 384
Fnu4HI GCNGC 1 cut(s) 45
FokI GGATG 2 cut(s) 363, 502
Fsp4HI GCNGC 1 cut(s) 45
FspBI CTAG 2 cut(s) 48, 357
GlaI GCGC 2 cut(s) 8, 158
GluI GCNGC 1 cut(s) 45
HaeII RGCGCY 2 cut(s) 10, 160
HaeIII GGCC 1 cut(s) 447
HapII CCGG 2 cut(s) 362, 380
HgaI GACGC 1 cut(s) 202
HhaI GCGC 2 cut(s) 9, 159
Hin1I GRCGYC 1 cut(s) 194
Hin1II CATG 7 cut(s) 127, 190, 355, 371, 376, 412, 452
Hin6I GCGC 2 cut(s) 7, 157
HinP1I GCGC 2 cut(s) 7, 157
HincII GTYRAC 1 cut(s) 192
HindII GTYRAC 1 cut(s) 192
HinfI GANTC 1 cut(s) 422
HpaII CCGG 2 cut(s) 362, 380
HphI GGTGA 1 cut(s) 246
Hpy166II GTNNAC 3 cut(s) 78, 192, 385
Hpy188I TCNGA 2 cut(s) 181, 531
Hpy188III TCNNGA 1 cut(s) 117
Hpy8I GTNNAC 3 cut(s) 78, 192, 385
Hpy99I CGWCG 2 cut(s) 73, 196
HpyCH4III ACNGT 1 cut(s) 332
HpyCH4V TGCA 2 cut(s) 376, 505
HpyF10VI GCNNNNNNNGC 1 cut(s) 154
Hsp92I GRCGYC 1 cut(s) 194
Hsp92II CATG 7 cut(s) 127, 190, 355, 371, 376, 412, 452
HspAI GCGC 2 cut(s) 7, 157
Kzo9I GATC 2 cut(s) 19, 119
LmnI GCTCC 1 cut(s) 514
LpnPI CCDG 9 cut(s) 106, 185, 211, 215, 238, 358, 375, 393, 467
Lsp1109I GCAGC 1 cut(s) 31
LweI GCATC 2 cut(s) 19, 385
MaeI CTAG 2 cut(s) 48, 357
MaeIII GTNAC 2 cut(s) 252, 347
MalI GATC 2 cut(s) 21, 121
MboI GATC 2 cut(s) 19, 119
MboII GAAGA 1 cut(s) 545
MflI RGATCY 1 cut(s) 119
MluCI AATT 3 cut(s) 524, 544, 558
MnlI CCTC 5 cut(s) 66, 94, 175, 451, 480
Mph1103I ATGCAT 1 cut(s) 378
MroXI GAANNNNTTC 1 cut(s) 545
MseI TTAA 2 cut(s) 215, 510
MslI CAYNNNNRTG 2 cut(s) 407, 447
MspA1I CMGCKG 1 cut(s) 44
MspI CCGG 2 cut(s) 362, 380
MspR9I CCNGG 2 cut(s) 226, 362
MvaI CCWGG 1 cut(s) 226
MwoI GCNNNNNNNGC 1 cut(s) 154
NciI CCSGG 1 cut(s) 362
NcoI CCATGG 1 cut(s) 408
NdeII GATC 2 cut(s) 19, 119
NheI GCTAGC 1 cut(s) 47
NlaIII CATG 7 cut(s) 127, 190, 355, 371, 376, 412, 452
NlaIV GGNNCC 1 cut(s) 343
NmuCI GTSAC 2 cut(s) 252, 347
NsiI ATGCAT 1 cut(s) 378
NspI RCATGY 1 cut(s) 376
PaeI GCATGC 1 cut(s) 376
PcsI WCGNNNNNNNCGW 1 cut(s) 68
PdmI GAANNNNTTC 1 cut(s) 545
PfeI GAWTC 1 cut(s) 422
PflFI GACNNNGTC 1 cut(s) 73
PkrI GCNGC 1 cut(s) 46
Psp6I CCWGG 1 cut(s) 224
PspEI GGTNACC 1 cut(s) 252
PspGI CCWGG 1 cut(s) 224
PspN4I GGNNCC 1 cut(s) 343
PsuI RGATCY 1 cut(s) 119
PsyI GACNNNGTC 1 cut(s) 73
RsaI GTAC 1 cut(s) 220
RsaNI GTAC 1 cut(s) 219
RseI CAYNNNNRTG 2 cut(s) 407, 447
SalI GTCGAC 1 cut(s) 190
SaqAI TTAA 2 cut(s) 215, 510
SatI GCNGC 1 cut(s) 45
Sau3AI GATC 2 cut(s) 19, 119
ScaI AGTACT 1 cut(s) 220
ScrFI CCNGG 2 cut(s) 226, 362
SetI ASST 7 cut(s) 53, 77, 86, 167, 259, 340, 401
SfaNI GCATC 2 cut(s) 19, 385
SmiMI CAYNNNNRTG 2 cut(s) 407, 447
SmlI CTYRAG 1 cut(s) 394
SmoI CTYRAG 1 cut(s) 394
SphI GCATGC 1 cut(s) 376
Sse9I AATT 3 cut(s) 524, 544, 558
SsiI CCGC 4 cut(s) 42, 265, 311, 440
SspMI CTAG 2 cut(s) 48, 357
StyD4I CCNGG 2 cut(s) 224, 360
StyI CCWWGG 1 cut(s) 408
TaaI ACNGT 1 cut(s) 332
TaqI TCGA 3 cut(s) 53, 191, 456
TaqII GACCGA 1 cut(s) 402
TasI AATT 3 cut(s) 524, 544, 558
TatI WGTACW 1 cut(s) 218
TfiI GAWTC 1 cut(s) 422
Tru1I TTAA 2 cut(s) 215, 510
Tru9I TTAA 2 cut(s) 215, 510
TscAI CASTG 4 cut(s) 31, 138, 204, 478
TseFI GTSAC 2 cut(s) 252, 347
TseI GCWGC 1 cut(s) 44
Tsp45I GTSAC 2 cut(s) 252, 347
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 4 cut(s) 31, 138, 204, 478
Tth111I GACNNNGTC 1 cut(s) 73
XapI RAATTY 1 cut(s) 544
XceI RCATGY 1 cut(s) 376
XmiI GTMKAC 3 cut(s) 77, 191, 384
XmnI GAANNNNTTC 1 cut(s) 545
XspI CTAG 2 cut(s) 48, 357
ZrmI AGTACT 1 cut(s) 220
Zsp2I ATGCAT 1 cut(s) 378
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.