Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0023137.1

Orthogroup ID

OG0002282

Physical Location & Seq

Genomic Coordinates Forward (+)

28941 .. 29944

Gene Structure 1004 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0023137.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

atgggtaggccaattgatgacttttttggtgctaatgtggtgatgcaagataacccggatctggtgtcaaagtatatagacaatggctcatgggttcttcctccgttgctgcaaattcattatccagcattatgtgatgtgattaatcaagttcccattgcattagatccttcaacagatgacaaacttatatggacttattctgactcaggtgagttaacagcaaagcaagcctatgtttttttgcatcatcctactcctccaatgaattcagcggtagctgaatcttggttaacgctggtccgatgggcggaccgctacttatggtattcttgttgcttccgctacttgtcaagtaaaatacaaaaggcgttagagggagaccgcggtgaggaagagacttatctcttccttgttttcaatgtgggactgatatgcttcagttcccagcttctgatgcttctgagactgttttggtgcgtcacatggcggcgcgtcagcggtgatcagggggtgagccggggctcaagtgatagcctatctggtggtgtttccgtaggtcacactgttgatggtcgttggtaccgctggcagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 RVT_3 zf-RVT

Protein Analysis

198

Amino Acids

22.56

Weight (kDa)

5.27

Isoelectric Point (pI)

37.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002282)

Species	Orthologous Gene IDs
pyrus_communis	pycom10g17910
rosa_chinensis	RchiOBHm_Chr2g0127881 RchiOBHm_Chr2g0128071 RchiOBHm_Chr2g0168141 RchiOBHm_Chr4g0394061 RchiOBHm_Chr4g0409481 RchiOBHm_Chr5g0057941 RchiOBHm_Chr6g0289331
rosa_multiflora	Rmu_sc0001136.1_g000034 Rmu_sc0002501.1_g000016 Rmu_sc0003941.1_g000003 Rmu_sc0012303.1_g000002 Rmu_sc0018337.1_g000005 Rmu_sc0023137.1_g000011 Rmu_sc0037818.1_g000001 Rmu_ssc0000118.1_g000006
rosa_roxburghii	Rroxscaffold_177G00434380 Rroxscaffold_1G00074020 Rroxscaffold_2G00119630 Rroxscaffold_4G00297870 Rroxscaffold_4G00303680 Rroxscaffold_4G00311340 Rroxscaffold_5G00333250 Rroxscaffold_5G00333260 Rroxscaffold_5G00365770 Rroxscaffold_5G00382860 Rroxscaffold_6G00423070 Rroxscaffold_7G00193890 Rroxscaffold_7G00201810
rosa_rugosa	Rorug05G0198200 Rorug05G0255000 Rorug05G0428300
rosa_samantha	Rh2BG339100 Rh2BG613700 Rh2CG365300 Rh5BG509200 Rh5DG521900 Rh6AG198000 Rh6BG265900 Rh6CG023900 Rh6DG023800 Rh7DG045500
rosa_wichuraiana	Rw0G014170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	582
AccB1I	GGYRCC	1 cut(s)	582
AccII	CGCG	2 cut(s)	387, 495
AciI	CCGC	9 cut(s)	275, 311, 316, 343, 385, 387, 490, 501, 586
AclWI	GGATC	2 cut(s)	66, 161
AcsI	RAATTY	2 cut(s)	114, 268
AcuI	CTGAAG	1 cut(s)	424
AfaI	GTAC	1 cut(s)	584
AfiI	CCNNNNNNNGG	3 cut(s)	61, 310, 391
AgsI	TTSAA	2 cut(s)	174, 421
AluBI	AGCT	2 cut(s)	281, 451
AluI	AGCT	2 cut(s)	281, 451
Alw26I	GTCTC	3 cut(s)	375, 392, 460
AlwI	GGATC	2 cut(s)	66, 161
AlwNI	CAGNNNCTG	1 cut(s)	454
AoxI	GGCC	1 cut(s)	8
ApeKI	GCWGC	1 cut(s)	109
ApoI	RAATTY	2 cut(s)	114, 268
AseI	ATTAAT	1 cut(s)	144
Asp718I	GGTACC	1 cut(s)	582
AspLEI	GCGC	1 cut(s)	495
AspS9I	GGNCC	2 cut(s)	301, 313
AsuC2I	CCSGG	2 cut(s)	56, 521
AsuHPI	GGTGA	5 cut(s)	52, 224, 401, 515, 526
AvaII	GGWCC	2 cut(s)	301, 313
BanI	GGYRCC	1 cut(s)	582
BanII	GRGCYC	1 cut(s)	527
BbvI	GCAGC	1 cut(s)	96
BccI	CCATC	2 cut(s)	300, 566
BclI	TGATCA	1 cut(s)	505
BcnI	CCSGG	2 cut(s)	56, 521
BcoDI	GTCTC	3 cut(s)	375, 392, 460
BisI	GCNGC	2 cut(s)	110, 491
BlsI	GCNGC	2 cut(s)	111, 492
Bme1390I	CCNGG	2 cut(s)	56, 521
Bme18I	GGWCC	2 cut(s)	301, 313
BmgT120I	GGNCC	2 cut(s)	301, 313
BmiI	GGNNCC	1 cut(s)	584
BmrFI	CCNGG	2 cut(s)	56, 521
BmsI	GCATC	3 cut(s)	33, 256, 447
BpuEI	CTTGAG	1 cut(s)	511
BpuMI	CCSGG	2 cut(s)	56, 521
BsaI	GGTCTC	1 cut(s)	375
BsaJI	CCNNGG	2 cut(s)	385, 520
Bsc4I	CCNNNNNNNGG	3 cut(s)	61, 310, 391
Bse3DI	GCAATG	1 cut(s)	156
BseDI	CCNNGG	2 cut(s)	385, 520
BseGI	GGATG	1 cut(s)	250
BseLI	CCNNNNNNNGG	3 cut(s)	61, 310, 391
BseMI	GCAATG	1 cut(s)	156
BseMII	CTCAG	2 cut(s)	222, 455
BseRI	GAGGAG	1 cut(s)	249
BseXI	GCAGC	1 cut(s)	96
BseYI	CCCAGC	1 cut(s)	447
Bsh1236I	CGCG	2 cut(s)	387, 495
BshFI	GGCC	1 cut(s)	10
BshNI	GGYRCC	1 cut(s)	582
BsiSI	CCGG	2 cut(s)	56, 520
BslFI	GGGAC	1 cut(s)	441
BslI	CCNNNNNNNGG	3 cut(s)	61, 310, 391
BsmAI	GTCTC	3 cut(s)	375, 392, 460
BsmFI	GGGAC	1 cut(s)	441
BsnI	GGCC	1 cut(s)	10
Bso31I	GGTCTC	1 cut(s)	375
Bsp1286I	GDGCHC	1 cut(s)	527
Bsp143I	GATC	3 cut(s)	58, 166, 505
BspACI	CCGC	9 cut(s)	275, 311, 316, 343, 385, 387, 490, 501, 586
BspANI	GGCC	1 cut(s)	10
BspCNI	CTCAG	2 cut(s)	221, 456
BspFNI	CGCG	2 cut(s)	387, 495
BspLI	GGNNCC	1 cut(s)	584
BspPI	GGATC	2 cut(s)	66, 161
BspT107I	GGYRCC	1 cut(s)	582
BspTNI	GGTCTC	1 cut(s)	375
BsrDI	GCAATG	1 cut(s)	156
BssECI	CCNNGG	2 cut(s)	385, 520
BssMI	GATC	3 cut(s)	58, 166, 505
Bst4CI	ACNGT	2 cut(s)	471, 568
Bst6I	CTCTTC	2 cut(s)	390, 413
BstC8I	GCNNGC	2 cut(s)	231, 590
BstDEI	CTNAG	2 cut(s)	208, 464
BstDSI	CCRYGG	1 cut(s)	385
BstF5I	GGATG	1 cut(s)	250
BstFNI	CGCG	2 cut(s)	387, 495
BstHHI	GCGC	1 cut(s)	495
BstKTI	GATC	3 cut(s)	61, 169, 508
BstMAI	GTCTC	3 cut(s)	375, 392, 460
BstMBI	GATC	3 cut(s)	58, 166, 505
BstMWI	GCNNNNNNNGC	2 cut(s)	230, 457
BstSCI	CCNGG	2 cut(s)	54, 519
BstUI	CGCG	2 cut(s)	387, 495
BstV1I	GCAGC	1 cut(s)	96
BstX2I	RGATCY	2 cut(s)	58, 166
BstYI	RGATCY	2 cut(s)	58, 166
BsuRI	GGCC	1 cut(s)	10
BtgI	CCRYGG	1 cut(s)	385
BtsCI	GGATG	1 cut(s)	250
BtsIMutI	CAGTG	1 cut(s)	564
Cac8I	GCNNGC	2 cut(s)	231, 590
CaiI	CAGNNNCTG	1 cut(s)	454
CfoI	GCGC	1 cut(s)	495
Cfr13I	GGNCC	2 cut(s)	301, 313
Cfr42I	CCGCGG	1 cut(s)	388
CpoI	CGGWCCG	1 cut(s)	313
CseI	GACGC	2 cut(s)	469, 484
Csp6I	GTAC	1 cut(s)	583
CspI	CGGWCCG	1 cut(s)	313
CviAII	CATG	2 cut(s)	90, 486
CviJI	RGCY	8 cut(s)	10, 87, 233, 281, 451, 519, 525, 537
CviKI_1	RGCY	8 cut(s)	10, 87, 233, 281, 451, 519, 525, 537
CviQI	GTAC	1 cut(s)	583
DdeI	CTNAG	2 cut(s)	208, 464
DpnI	GATC	3 cut(s)	60, 168, 507
DpnII	GATC	3 cut(s)	58, 166, 505
Eam1104I	CTCTTC	2 cut(s)	390, 413
EarI	CTCTTC	2 cut(s)	390, 413
EciI	GGCGGA	1 cut(s)	326
Eco24I	GRGCYC	1 cut(s)	527
Eco31I	GGTCTC	1 cut(s)	375
Eco47I	GGWCC	2 cut(s)	301, 313
Eco57I	CTGAAG	1 cut(s)	424
EcoRI	GAATTC	1 cut(s)	268
EcoT38I	GRGCYC	1 cut(s)	527
FaeI	CATG	2 cut(s)	93, 489
FaqI	GGGAC	1 cut(s)	441
FatI	CATG	2 cut(s)	89, 485
FbaI	TGATCA	1 cut(s)	505
Fnu4HI	GCNGC	2 cut(s)	110, 491
FokI	GGATG	1 cut(s)	237
FriOI	GRGCYC	1 cut(s)	527
Fsp4HI	GCNGC	2 cut(s)	110, 491
GlaI	GCGC	1 cut(s)	494
GluI	GCNGC	2 cut(s)	110, 491
GsaI	CCCAGC	1 cut(s)	451
HaeIII	GGCC	1 cut(s)	10
HapII	CCGG	2 cut(s)	56, 520
HgaI	GACGC	2 cut(s)	469, 484
HhaI	GCGC	1 cut(s)	495
Hin1II	CATG	2 cut(s)	93, 489
Hin6I	GCGC	1 cut(s)	493
HinP1I	GCGC	1 cut(s)	493
HincII	GTYRAC	2 cut(s)	219, 294
HindII	GTYRAC	2 cut(s)	219, 294
HinfI	GANTC	2 cut(s)	206, 284
HpaI	GTTAAC	2 cut(s)	219, 294
HpaII	CCGG	2 cut(s)	56, 520
HphI	GGTGA	5 cut(s)	52, 224, 401, 515, 526
Hpy166II	GTNNAC	2 cut(s)	219, 294
Hpy188I	TCNGA	4 cut(s)	205, 305, 456, 465
Hpy8I	GTNNAC	2 cut(s)	219, 294
HpyAV	CCTTC	1 cut(s)	180
HpyCH4III	ACNGT	2 cut(s)	471, 568
HpyCH4V	TGCA	4 cut(s)	46, 112, 161, 247
HpyF10VI	GCNNNNNNNGC	2 cut(s)	230, 457
HpyF3I	CTNAG	2 cut(s)	208, 464
Hsp92II	CATG	2 cut(s)	93, 489
HspAI	GCGC	1 cut(s)	493
KpnI	GGTACC	1 cut(s)	586
Ksp22I	TGATCA	1 cut(s)	505
KspAI	GTTAAC	2 cut(s)	219, 294
KspI	CCGCGG	1 cut(s)	388
Kzo9I	GATC	3 cut(s)	58, 166, 505
Lsp1109I	GCAGC	1 cut(s)	96
LweI	GCATC	3 cut(s)	33, 256, 447
MaeIII	GTNAC	2 cut(s)	481, 560
MalI	GATC	3 cut(s)	60, 168, 507
MboI	GATC	3 cut(s)	58, 166, 505
MboII	GAAGA	3 cut(s)	89, 400, 407
MfeI	CAATTG	1 cut(s)	12
MflI	RGATCY	2 cut(s)	58, 166
MhlI	GDGCHC	1 cut(s)	527
MluCI	AATT	3 cut(s)	12, 114, 268
MlyI	GAGTC	1 cut(s)	200
MnlI	CCTC	4 cut(s)	111, 270, 370, 385
MseI	TTAA	3 cut(s)	144, 218, 293
MspA1I	CMGCKG	4 cut(s)	275, 387, 501, 588
MspI	CCGG	2 cut(s)	56, 520
MspR9I	CCNGG	2 cut(s)	56, 521
MunI	CAATTG	1 cut(s)	12
MvnI	CGCG	2 cut(s)	387, 495
MwoI	GCNNNNNNNGC	2 cut(s)	230, 457
NciI	CCSGG	2 cut(s)	56, 521
NdeII	GATC	3 cut(s)	58, 166, 505
NlaIII	CATG	2 cut(s)	93, 489
NlaIV	GGNNCC	1 cut(s)	584
NmuCI	GTSAC	2 cut(s)	481, 560
PfeI	GAWTC	1 cut(s)	284
PkrI	GCNGC	2 cut(s)	111, 492
PleI	GAGTC	1 cut(s)	200
PpsI	GAGTC	1 cut(s)	200
PshBI	ATTAAT	1 cut(s)	144
PspFI	CCCAGC	1 cut(s)	447
PspN4I	GGNNCC	1 cut(s)	584
PspPI	GGNCC	2 cut(s)	301, 313
PstNI	CAGNNNCTG	1 cut(s)	454
PsuI	RGATCY	2 cut(s)	58, 166
RsaI	GTAC	1 cut(s)	584
RsaNI	GTAC	1 cut(s)	583
Rsr2I	CGGWCCG	1 cut(s)	313
RsrII	CGGWCCG	1 cut(s)	313
SacII	CCGCGG	1 cut(s)	388
SaqAI	TTAA	3 cut(s)	144, 218, 293
SatI	GCNGC	2 cut(s)	110, 491
Sau3AI	GATC	3 cut(s)	58, 166, 505
Sau96I	GGNCC	2 cut(s)	301, 313
SchI	GAGTC	1 cut(s)	200
ScrFI	CCNGG	2 cut(s)	56, 521
SduI	GDGCHC	1 cut(s)	527
SetI	ASST	4 cut(s)	214, 283, 453, 562
SfaNI	GCATC	3 cut(s)	33, 256, 447
Sfr303I	CCGCGG	1 cut(s)	388
SgrBI	CCGCGG	1 cut(s)	388
SinI	GGWCC	2 cut(s)	301, 313
SmlI	CTYRAG	1 cut(s)	526
SmoI	CTYRAG	1 cut(s)	526
Sse9I	AATT	3 cut(s)	12, 114, 268
SsiI	CCGC	9 cut(s)	275, 311, 316, 343, 385, 387, 490, 501, 586
StyD4I	CCNGG	2 cut(s)	54, 519
TaaI	ACNGT	2 cut(s)	471, 568
TasI	AATT	3 cut(s)	12, 114, 268
TauI	GCSGC	1 cut(s)	493
TfiI	GAWTC	1 cut(s)	284
Tru1I	TTAA	3 cut(s)	144, 218, 293
Tru9I	TTAA	3 cut(s)	144, 218, 293
TscAI	CASTG	1 cut(s)	571
TseFI	GTSAC	2 cut(s)	481, 560
TseI	GCWGC	1 cut(s)	109
Tsp45I	GTSAC	2 cut(s)	481, 560
TspDTI	ATGAA	2 cut(s)	107, 281
TspGWI	ACGGA	2 cut(s)	93, 544
TspRI	CASTG	1 cut(s)	571
VpaK11BI	GGWCC	2 cut(s)	301, 313
VspI	ATTAAT	1 cut(s)	144
XapI	RAATTY	2 cut(s)	114, 268

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.