Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0002282

Physical Location & Seq

Genomic Coordinates Forward (+)

17750660 .. 17751724

Gene Structure 1065 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00297870.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

ATGAATATTCTACAAAAGGATCAAAAGCTTGTGCAGTACATCCAACAACACGGTCATGGAAGGTGGCGAGCTCTCCCCAAGCTTGCAGTGCCACCGGCACGGGAGATCAAAGCCACCGGACACCCAACGGGTTACGAGGCACAAATCATCATTCTGCCGGGGGCCACGCCACTTGGTAAGGAGGCTACCGCCCTCATTCACCTCAACGGGTACAAGAGGCTCGAAGCCTATCTACTCTACGGTGCTAAGGCTCAAGCCTACTACTCCACGGGTACACGAGGCCTACGGGCCCTCATAATCCTCTACTTTGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006357 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009737 GO:0009751 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0014070 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0046677 GO:0048519 GO:0048580 GO:0048581 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051239 GO:0051241 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901332 GO:1901363 GO:1901700 GO:1903506 GO:2000023 GO:2000026 GO:2000069 GO:2000112 GO:2000280 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

104

Amino Acids

11.63

Weight (kDa)

9.82

Isoelectric Point (pI)

32.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002282)

Species	Orthologous Gene IDs
pyrus_communis	pycom10g17910
rosa_chinensis	RchiOBHm_Chr2g0127881 RchiOBHm_Chr2g0128071 RchiOBHm_Chr2g0168141 RchiOBHm_Chr4g0394061 RchiOBHm_Chr4g0409481 RchiOBHm_Chr5g0057941 RchiOBHm_Chr6g0289331
rosa_multiflora	Rmu_sc0001136.1_g000034 Rmu_sc0002501.1_g000016 Rmu_sc0003941.1_g000003 Rmu_sc0012303.1_g000002 Rmu_sc0018337.1_g000005 Rmu_sc0023137.1_g000011 Rmu_sc0037818.1_g000001 Rmu_ssc0000118.1_g000006
rosa_roxburghii	Rroxscaffold_177G00434380 Rroxscaffold_1G00074020 Rroxscaffold_2G00119630 Rroxscaffold_4G00297870 Rroxscaffold_4G00303680 Rroxscaffold_4G00311340 Rroxscaffold_5G00333250 Rroxscaffold_5G00333260 Rroxscaffold_5G00365770 Rroxscaffold_5G00382860 Rroxscaffold_6G00423070 Rroxscaffold_7G00193890 Rroxscaffold_7G00201810
rosa_rugosa	Rorug05G0198200 Rorug05G0255000 Rorug05G0428300
rosa_samantha	Rh2BG339100 Rh2BG613700 Rh2CG365300 Rh5BG509200 Rh5DG521900 Rh6AG198000 Rh6BG265900 Rh6CG023900 Rh6DG023800 Rh7DG045500
rosa_wichuraiana	Rw0G014170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	189
AclWI	GGATC	1 cut(s)	27
AfaI	GTAC	3 cut(s)	38, 212, 274
AluBI	AGCT	3 cut(s)	28, 71, 82
AluI	AGCT	3 cut(s)	28, 71, 82
Alw21I	GWGCWC	1 cut(s)	73
AlwI	GGATC	1 cut(s)	27
AoxI	GGCC	3 cut(s)	162, 280, 288
ApaI	GGGCCC	1 cut(s)	292
AspS9I	GGNCC	3 cut(s)	162, 288, 289
AsuC2I	CCSGG	1 cut(s)	159
AsuHPI	GGTGA	1 cut(s)	191
BaeGI	GKGCMC	1 cut(s)	292
BanII	GRGCYC	2 cut(s)	73, 292
BarI	GAAGNNNNNNTAC	2 cut(s)	216, 248
BauI	CACGAG	1 cut(s)	276
Bbv12I	GWGCWC	1 cut(s)	73
BcnI	CCSGG	1 cut(s)	159
Bme1390I	CCNGG	1 cut(s)	159
BmgT120I	GGNCC	3 cut(s)	162, 288, 289
BmiI	GGNNCC	2 cut(s)	163, 290
BmrFI	CCNGG	1 cut(s)	159
Bpu10I	CCTNAGC	1 cut(s)	246
BpuEI	CTTGAG	1 cut(s)	237
BpuMI	CCSGG	1 cut(s)	159
BsaJI	CCNNGG	2 cut(s)	158, 267
BsaWI	WCCGGW	1 cut(s)	116
Bse118I	RCCGGY	1 cut(s)	94
BseDI	CCNNGG	2 cut(s)	158, 267
BseGI	GGATG	1 cut(s)	39
BseSI	GKGCMC	1 cut(s)	292
BsgI	GTGCAG	1 cut(s)	53
BshFI	GGCC	3 cut(s)	164, 282, 290
BsiHKAI	GWGCWC	1 cut(s)	73
BsiSI	CCGG	3 cut(s)	95, 117, 158
BsnI	GGCC	3 cut(s)	164, 282, 290
Bsp120I	GGGCCC	1 cut(s)	288
Bsp1286I	GDGCHC	2 cut(s)	73, 292
Bsp143I	GATC	2 cut(s)	19, 105
BspACI	CCGC	1 cut(s)	189
BspANI	GGCC	3 cut(s)	164, 282, 290
BspLI	GGNNCC	2 cut(s)	163, 290
BspPI	GGATC	1 cut(s)	27
BsrFI	RCCGGY	1 cut(s)	94
BssAI	RCCGGY	1 cut(s)	94
BssECI	CCNNGG	2 cut(s)	158, 267
BssMI	GATC	2 cut(s)	19, 105
BssSI	CACGAG	1 cut(s)	276
Bst2BI	CACGAG	1 cut(s)	276
Bst4CI	ACNGT	2 cut(s)	53, 242
BstC8I	GCNNGC	2 cut(s)	69, 84
BstDEI	CTNAG	1 cut(s)	246
BstDSI	CCRYGG	1 cut(s)	267
BstF5I	GGATG	1 cut(s)	39
BstKTI	GATC	2 cut(s)	22, 108
BstMBI	GATC	2 cut(s)	19, 105
BstMWI	GCNNNNNNNGC	1 cut(s)	88
BstSCI	CCNGG	1 cut(s)	157
BstSLI	GKGCMC	1 cut(s)	292
BsuRI	GGCC	3 cut(s)	164, 282, 290
BtgI	CCRYGG	1 cut(s)	267
BtsCI	GGATG	1 cut(s)	39
BtsI	GCAGTG	1 cut(s)	93
BtsIMutI	CAGTG	1 cut(s)	93
Cac8I	GCNNGC	2 cut(s)	69, 84
Cfr10I	RCCGGY	1 cut(s)	94
Cfr13I	GGNCC	3 cut(s)	162, 288, 289
Csp6I	GTAC	3 cut(s)	37, 211, 273
CspCI	CAANNNNNGTGG	2 cut(s)	154, 189
CviAII	CATG	1 cut(s)	56
CviQI	GTAC	3 cut(s)	37, 211, 273
DdeI	CTNAG	1 cut(s)	246
DpnI	GATC	2 cut(s)	21, 107
DpnII	GATC	2 cut(s)	19, 105
Ecl136II	GAGCTC	1 cut(s)	71
Eco147I	AGGCCT	1 cut(s)	282
Eco24I	GRGCYC	2 cut(s)	73, 292
Eco53kI	GAGCTC	1 cut(s)	71
EcoICRI	GAGCTC	1 cut(s)	71
EcoO109I	RGGNCCY	1 cut(s)	289
EcoT38I	GRGCYC	2 cut(s)	73, 292
FaeI	CATG	1 cut(s)	59
FaiI	YATR	2 cut(s)	57, 296
FatI	CATG	1 cut(s)	55
FokI	GGATG	1 cut(s)	26
FriOI	GRGCYC	2 cut(s)	73, 292
HaeIII	GGCC	3 cut(s)	164, 282, 290
HapII	CCGG	3 cut(s)	95, 117, 158
Hin1II	CATG	1 cut(s)	59
HindIII	AAGCTT	2 cut(s)	26, 80
HpaII	CCGG	3 cut(s)	95, 117, 158
HphI	GGTGA	1 cut(s)	191
Hpy166II	GTNNAC	1 cut(s)	275
Hpy8I	GTNNAC	1 cut(s)	275
HpyAV	CCTTC	1 cut(s)	54
HpyCH4III	ACNGT	2 cut(s)	53, 242
HpyCH4V	TGCA	2 cut(s)	34, 86
HpyF10VI	GCNNNNNNNGC	1 cut(s)	88
HpyF3I	CTNAG	1 cut(s)	246
Hsp92II	CATG	1 cut(s)	59
Kzo9I	GATC	2 cut(s)	19, 105
LpnPI	CCDG	3 cut(s)	108, 130, 171
MaeIII	GTNAC	1 cut(s)	131
MalI	GATC	2 cut(s)	21, 107
MboI	GATC	2 cut(s)	19, 105
MhlI	GDGCHC	2 cut(s)	73, 292
MmeI	TCCRAC	1 cut(s)	67
MnlI	CCTC	8 cut(s)	130, 175, 203, 210, 212, 272, 302, 311
MslI	CAYNNNNRTG	1 cut(s)	54
MspI	CCGG	3 cut(s)	95, 117, 158
MspR9I	CCNGG	1 cut(s)	159
MwoI	GCNNNNNNNGC	1 cut(s)	88
NciI	CCSGG	1 cut(s)	159
NdeII	GATC	2 cut(s)	19, 105
NlaIII	CATG	1 cut(s)	59
NlaIV	GGNNCC	2 cut(s)	163, 290
PceI	AGGCCT	1 cut(s)	282
Psp124BI	GAGCTC	1 cut(s)	73
PspN4I	GGNNCC	2 cut(s)	163, 290
PspOMI	GGGCCC	1 cut(s)	288
PspPI	GGNCC	3 cut(s)	162, 288, 289
RsaI	GTAC	3 cut(s)	38, 212, 274
RsaNI	GTAC	3 cut(s)	37, 211, 273
RseI	CAYNNNNRTG	1 cut(s)	54
SacI	GAGCTC	1 cut(s)	73
Sau3AI	GATC	2 cut(s)	19, 105
Sau96I	GGNCC	3 cut(s)	162, 288, 289
ScrFI	CCNGG	1 cut(s)	159
SduI	GDGCHC	2 cut(s)	73, 292
SetI	ASST	5 cut(s)	30, 65, 73, 84, 204
SmiMI	CAYNNNNRTG	1 cut(s)	54
SmlI	CTYRAG	1 cut(s)	252
SmoI	CTYRAG	1 cut(s)	252
SseBI	AGGCCT	1 cut(s)	282
SsiI	CCGC	1 cut(s)	189
SspI	AATATT	1 cut(s)	7
SstI	GAGCTC	1 cut(s)	73
StuI	AGGCCT	1 cut(s)	282
StyD4I	CCNGG	1 cut(s)	157
TaaI	ACNGT	2 cut(s)	53, 242
TaqI	TCGA	1 cut(s)	222
TatI	WGTACW	1 cut(s)	36
TscAI	CASTG	1 cut(s)	93
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	93

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.