Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0002282

Physical Location & Seq

Genomic Coordinates Reverse (-)

684647 .. 690185

Gene Structure 5539 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00333260.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGAGTTCTAACAATTGGTTACGTTACACTAAAGGAAAGTATTCAGCCCCAAATGAAACTTCACTACCATCCCTTTGCATCAATTTGTCTCATAATCTCTCACACTCCTATCATCTTGATGTCAAATACGCACTTAAAATCCTCGCCTCGAGCGAGGTACCCCCAAGGGATAAGTCAAGGTCAAATCCTTACATAAATCCTCTCCAATCGGCGAGGTACCCCAATGGGGTTAAGAGGCTCAAGCCCTCATTCTACCCGGCCACGCCACCGGGTAAAGGAGGCCCACCGCCCTCATTCAACCTCATTGGGTTAAGGAGGCTCATGCCCTCACATAACCCCACCGGGTCACGAGGTTCAAACCCTCATTCACTCTACCGGTACACGAGGCTCGAAGCCTATCTACTCCACGGTGCTAAGGCTCAAGCTTATCTACCCCACCGGGTACATGAGGCCTACGAGCCCTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

155

Amino Acids

17.38

Weight (kDa)

10.04

Isoelectric Point (pI)

53.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002282)

Species	Orthologous Gene IDs
pyrus_communis	pycom10g17910
rosa_chinensis	RchiOBHm_Chr2g0127881 RchiOBHm_Chr2g0128071 RchiOBHm_Chr2g0168141 RchiOBHm_Chr4g0394061 RchiOBHm_Chr4g0409481 RchiOBHm_Chr5g0057941 RchiOBHm_Chr6g0289331
rosa_multiflora	Rmu_sc0001136.1_g000034 Rmu_sc0002501.1_g000016 Rmu_sc0003941.1_g000003 Rmu_sc0012303.1_g000002 Rmu_sc0018337.1_g000005 Rmu_sc0023137.1_g000011 Rmu_sc0037818.1_g000001 Rmu_ssc0000118.1_g000006
rosa_roxburghii	Rroxscaffold_177G00434380 Rroxscaffold_1G00074020 Rroxscaffold_2G00119630 Rroxscaffold_4G00297870 Rroxscaffold_4G00303680 Rroxscaffold_4G00311340 Rroxscaffold_5G00333250 Rroxscaffold_5G00333260 Rroxscaffold_5G00365770 Rroxscaffold_5G00382860 Rroxscaffold_6G00423070 Rroxscaffold_7G00193890 Rroxscaffold_7G00201810
rosa_rugosa	Rorug05G0198200 Rorug05G0255000 Rorug05G0428300
rosa_samantha	Rh2BG339100 Rh2BG613700 Rh2CG365300 Rh5BG509200 Rh5DG521900 Rh6AG198000 Rh6BG265900 Rh6CG023900 Rh6DG023800 Rh7DG045500
rosa_wichuraiana	Rw0G014170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	2 cut(s)	157, 216
AccB1I	GGYRCC	2 cut(s)	157, 216
AciI	CCGC	1 cut(s)	287
AcoI	YGGCCR	1 cut(s)	258
AfaI	GTAC	4 cut(s)	159, 218, 380, 444
AfiI	CCNNNNNNNGG	2 cut(s)	226, 275
AgeI	ACCGGT	1 cut(s)	375
AgsI	TTSAA	2 cut(s)	298, 357
AjuI	GAANNNNNNNTTGG	2 cut(s)	43, 75
AluBI	AGCT	1 cut(s)	425
AluI	AGCT	1 cut(s)	425
Alw26I	GTCTC	1 cut(s)	93
Ama87I	CYCGRG	1 cut(s)	148
AoxI	GGCC	3 cut(s)	258, 280, 450
AsiGI	ACCGGT	1 cut(s)	375
Asp700I	GAANNNNTTC	1 cut(s)	40
Asp718I	GGTACC	2 cut(s)	157, 216
AspS9I	GGNCC	1 cut(s)	281
AsuC2I	CCSGG	4 cut(s)	257, 270, 343, 440
AvaI	CYCGRG	1 cut(s)	148
BanI	GGYRCC	2 cut(s)	157, 216
BanII	GRGCYC	1 cut(s)	462
BarI	GAAGNNNNNNTAC	2 cut(s)	384, 416
BauI	CACGAG	2 cut(s)	348, 382
BccI	CCATC	1 cut(s)	76
BcnI	CCSGG	4 cut(s)	257, 270, 343, 440
BcoDI	GTCTC	1 cut(s)	93
Bme1390I	CCNGG	4 cut(s)	257, 270, 343, 440
BmeT110I	CYCGRG	1 cut(s)	148
BmgT120I	GGNCC	1 cut(s)	281
BmiI	GGNNCC	2 cut(s)	159, 218
BmrFI	CCNGG	4 cut(s)	257, 270, 343, 440
BmsI	GCATC	1 cut(s)	87
Bpu10I	CCTNAGC	1 cut(s)	414
BpuEI	CTTGAG	2 cut(s)	224, 405
BpuMI	CCSGG	4 cut(s)	257, 270, 343, 440
BsaJI	CCNNGG	2 cut(s)	164, 406
BsaWI	WCCGGW	1 cut(s)	375
Bsc4I	CCNNNNNNNGG	2 cut(s)	226, 275
Bse118I	RCCGGY	1 cut(s)	375
BseDI	CCNNGG	2 cut(s)	164, 406
BseGI	GGATG	1 cut(s)	68
BseLI	CCNNNNNNNGG	2 cut(s)	226, 275
BshFI	GGCC	3 cut(s)	260, 282, 452
BshNI	GGYRCC	2 cut(s)	157, 216
BshTI	ACCGGT	1 cut(s)	375
BsiHKCI	CYCGRG	1 cut(s)	148
BsiSI	CCGG	5 cut(s)	257, 269, 342, 376, 439
BslI	CCNNNNNNNGG	2 cut(s)	226, 275
BsmAI	GTCTC	1 cut(s)	93
BsnI	GGCC	3 cut(s)	260, 282, 452
BsoBI	CYCGRG	1 cut(s)	148
Bsp1286I	GDGCHC	1 cut(s)	462
BspACI	CCGC	1 cut(s)	287
BspANI	GGCC	3 cut(s)	260, 282, 452
BspLI	GGNNCC	2 cut(s)	159, 218
BspT107I	GGYRCC	2 cut(s)	157, 216
BsrFI	RCCGGY	1 cut(s)	375
BssAI	RCCGGY	1 cut(s)	375
BssECI	CCNNGG	2 cut(s)	164, 406
BssSI	CACGAG	2 cut(s)	348, 382
BssT1I	CCWWGG	1 cut(s)	164
Bst2BI	CACGAG	2 cut(s)	348, 382
Bst4CI	ACNGT	1 cut(s)	410
BstDEI	CTNAG	1 cut(s)	414
BstDSI	CCRYGG	1 cut(s)	406
BstF5I	GGATG	1 cut(s)	68
BstMAI	GTCTC	1 cut(s)	93
BstSCI	CCNGG	4 cut(s)	255, 268, 341, 438
BsuRI	GGCC	3 cut(s)	260, 282, 452
BtgI	CCRYGG	1 cut(s)	406
BtsCI	GGATG	1 cut(s)	68
Cfr10I	RCCGGY	1 cut(s)	375
Cfr13I	GGNCC	1 cut(s)	281
Csp6I	GTAC	4 cut(s)	158, 217, 379, 443
CspAI	ACCGGT	1 cut(s)	375
CviAII	CATG	2 cut(s)	322, 446
CviQI	GTAC	4 cut(s)	158, 217, 379, 443
DdeI	CTNAG	1 cut(s)	414
EaeI	YGGCCR	1 cut(s)	258
Eco130I	CCWWGG	1 cut(s)	164
Eco147I	AGGCCT	1 cut(s)	452
Eco24I	GRGCYC	1 cut(s)	462
Eco88I	CYCGRG	1 cut(s)	148
EcoT14I	CCWWGG	1 cut(s)	164
EcoT38I	GRGCYC	1 cut(s)	462
ErhI	CCWWGG	1 cut(s)	164
FaeI	CATG	2 cut(s)	325, 449
FaiI	YATR	6 cut(s)	93, 194, 323, 333, 447, 466
FatI	CATG	2 cut(s)	321, 445
FokI	GGATG	1 cut(s)	55
FriOI	GRGCYC	1 cut(s)	462
HaeIII	GGCC	3 cut(s)	260, 282, 452
HapII	CCGG	5 cut(s)	257, 269, 342, 376, 439
Hin1II	CATG	2 cut(s)	325, 449
HindIII	AAGCTT	1 cut(s)	423
HpaII	CCGG	5 cut(s)	257, 269, 342, 376, 439
Hpy166II	GTNNAC	1 cut(s)	381
Hpy188III	TCNNGA	2 cut(s)	116, 348
Hpy8I	GTNNAC	1 cut(s)	381
HpyCH4III	ACNGT	1 cut(s)	410
HpyCH4IV	ACGT	1 cut(s)	22
HpyCH4V	TGCA	1 cut(s)	78
HpyF3I	CTNAG	1 cut(s)	414
HpySE526I	ACGT	1 cut(s)	22
Hsp92II	CATG	2 cut(s)	325, 449
KpnI	GGTACC	2 cut(s)	161, 220
LpnPI	CCDG	5 cut(s)	270, 282, 355, 389, 452
LweI	GCATC	1 cut(s)	87
MaeII	ACGT	1 cut(s)	22
MaeIII	GTNAC	3 cut(s)	18, 23, 345
MfeI	CAATTG	1 cut(s)	13
MhlI	GDGCHC	1 cut(s)	462
MluCI	AATT	2 cut(s)	13, 82
MroXI	GAANNNNTTC	1 cut(s)	40
MseI	TTAA	3 cut(s)	135, 231, 311
MslI	CAYNNNNRTG	1 cut(s)	117
MspI	CCGG	5 cut(s)	257, 269, 342, 376, 439
MspR9I	CCNGG	4 cut(s)	257, 270, 343, 440
MunI	CAATTG	1 cut(s)	13
NciI	CCSGG	4 cut(s)	257, 270, 343, 440
NlaIII	CATG	2 cut(s)	325, 449
NlaIV	GGNNCC	2 cut(s)	159, 218
NmuCI	GTSAC	1 cut(s)	345
PaeR7I	CTCGAG	1 cut(s)	148
PceI	AGGCCT	1 cut(s)	452
PcsI	WCGNNNNNNNCGW	1 cut(s)	150
PdmI	GAANNNNTTC	1 cut(s)	40
PinAI	ACCGGT	1 cut(s)	375
PspN4I	GGNNCC	2 cut(s)	159, 218
PspPI	GGNCC	1 cut(s)	281
PspXI	VCTCGAGB	1 cut(s)	148
RsaI	GTAC	4 cut(s)	159, 218, 380, 444
RsaNI	GTAC	4 cut(s)	158, 217, 379, 443
RseI	CAYNNNNRTG	1 cut(s)	117
SaqAI	TTAA	3 cut(s)	135, 231, 311
Sau96I	GGNCC	1 cut(s)	281
ScrFI	CCNGG	4 cut(s)	257, 270, 343, 440
SduI	GDGCHC	1 cut(s)	462
SetI	ASST	7 cut(s)	25, 159, 182, 218, 303, 355, 427
SfaNI	GCATC	1 cut(s)	87
Sfr274I	CTCGAG	1 cut(s)	148
SlaI	CTCGAG	1 cut(s)	148
SmiMI	CAYNNNNRTG	1 cut(s)	117
SmlI	CTYRAG	3 cut(s)	148, 239, 420
SmoI	CTYRAG	3 cut(s)	148, 239, 420
Sse9I	AATT	2 cut(s)	13, 82
SseBI	AGGCCT	1 cut(s)	452
SsiI	CCGC	1 cut(s)	287
StuI	AGGCCT	1 cut(s)	452
StyD4I	CCNGG	4 cut(s)	255, 268, 341, 438
StyI	CCWWGG	1 cut(s)	164
TaaI	ACNGT	1 cut(s)	410
TaiI	ACGT	1 cut(s)	25
TaqI	TCGA	2 cut(s)	149, 390
TasI	AATT	2 cut(s)	13, 82
Tru1I	TTAA	3 cut(s)	135, 231, 311
Tru9I	TTAA	3 cut(s)	135, 231, 311
TseFI	GTSAC	1 cut(s)	345
Tsp45I	GTSAC	1 cut(s)	345
TspDTI	ATGAA	1 cut(s)	69
XhoI	CTCGAG	1 cut(s)	148
XmnI	GAANNNNTTC	1 cut(s)	40

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.