Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001136.1

Orthogroup ID

OG0002282

Physical Location & Seq

Genomic Coordinates Reverse (-)

156631 .. 158015

Gene Structure 1385 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001136.1_g000034.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

atggatggacgcaggaccggtctggtcgactcatctcggcggtgcgatcagtatcccagtagtctctgctccgaaataccggcgactgcagcaggaggaagcctgaaaagtttatgggttcgccggcgggttttccggttcctgccaaatcgcgctccgcctcttgggctgctgctgcggctgcttcttctttggaggcagaaggaggagagagagagagagaaagagaatgaggaaagagagctgaagaagaagaagagcataagctatccattggtaagtgttgatacgacacatcacatagcaccaagcataagcaaggacctcataggtgggctccatgacatagttagtccagtctacgacatgcatccggtagtccgacacccgagctacctcgctatggtggaggtcggccggtatcttgctgggaggccaccctcccatgctctccaaaaggcttcaagggaaacaaatatgtgcattgtgtcccacatcgaaaatatagaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

170

Amino Acids

19.36

Weight (kDa)

9.54

Isoelectric Point (pI)

73.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002282)

Species	Orthologous Gene IDs
pyrus_communis	pycom10g17910
rosa_chinensis	RchiOBHm_Chr2g0127881 RchiOBHm_Chr2g0128071 RchiOBHm_Chr2g0168141 RchiOBHm_Chr4g0394061 RchiOBHm_Chr4g0409481 RchiOBHm_Chr5g0057941 RchiOBHm_Chr6g0289331
rosa_multiflora	Rmu_sc0001136.1_g000034 Rmu_sc0002501.1_g000016 Rmu_sc0003941.1_g000003 Rmu_sc0012303.1_g000002 Rmu_sc0018337.1_g000005 Rmu_sc0023137.1_g000011 Rmu_sc0037818.1_g000001 Rmu_ssc0000118.1_g000006
rosa_roxburghii	Rroxscaffold_177G00434380 Rroxscaffold_1G00074020 Rroxscaffold_2G00119630 Rroxscaffold_4G00297870 Rroxscaffold_4G00303680 Rroxscaffold_4G00311340 Rroxscaffold_5G00333250 Rroxscaffold_5G00333260 Rroxscaffold_5G00365770 Rroxscaffold_5G00382860 Rroxscaffold_6G00423070 Rroxscaffold_7G00193890 Rroxscaffold_7G00201810
rosa_rugosa	Rorug05G0198200 Rorug05G0255000 Rorug05G0428300
rosa_samantha	Rh2BG339100 Rh2BG613700 Rh2CG365300 Rh5BG509200 Rh5DG521900 Rh6AG198000 Rh6BG265900 Rh6CG023900 Rh6DG023800 Rh7DG045500
rosa_wichuraiana	Rw0G014170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	27, 360
AccII	CGCG	1 cut(s)	153
AciI	CCGC	4 cut(s)	40, 127, 158, 178
AcoI	YGGCCR	1 cut(s)	415
AcuI	CTGAAG	1 cut(s)	266
AfiI	CCNNNNNNNGG	2 cut(s)	164, 403
AgeI	ACCGGT	1 cut(s)	17
AgsI	TTSAA	1 cut(s)	465
AluBI	AGCT	3 cut(s)	244, 267, 393
AluI	AGCT	3 cut(s)	244, 267, 393
Alw26I	GTCTC	1 cut(s)	68
Ama87I	CYCGRG	1 cut(s)	388
AoxI	GGCC	2 cut(s)	415, 434
ApeKI	GCWGC	5 cut(s)	89, 169, 172, 175, 181
AsiGI	ACCGGT	1 cut(s)	17
AspLEI	GCGC	1 cut(s)	155
AspS9I	GGNCC	2 cut(s)	15, 322
AvaI	CYCGRG	1 cut(s)	388
AvaII	GGWCC	2 cut(s)	15, 322
BanII	GRGCYC	1 cut(s)	339
BbvI	GCAGC	5 cut(s)	101, 156, 159, 162, 168
BciVI	GTATCC	1 cut(s)	63
BcoDI	GTCTC	1 cut(s)	68
BfmI	CTRYAG	1 cut(s)	87
BfuI	GTATCC	1 cut(s)	63
BglI	GCCNNNNNGGC	1 cut(s)	166
BisI	GCNGC	6 cut(s)	90, 170, 173, 176, 179, 182
BlsI	GCNGC	6 cut(s)	91, 171, 174, 177, 180, 183
Bme18I	GGWCC	2 cut(s)	15, 322
BmeT110I	CYCGRG	1 cut(s)	388
BmgT120I	GGNCC	2 cut(s)	15, 322
BmiI	GGNNCC	2 cut(s)	140, 338
BmrI	ACTGGG	1 cut(s)	51
BmsI	GCATC	1 cut(s)	379
BmuI	ACTGGG	1 cut(s)	51
BsaBI	GATNNNNATC	1 cut(s)	51
BsaWI	WCCGGW	3 cut(s)	17, 135, 373
Bsc4I	CCNNNNNNNGG	2 cut(s)	164, 403
Bse118I	RCCGGY	4 cut(s)	17, 79, 123, 417
Bse1I	ACTGG	2 cut(s)	57, 356
Bse8I	GATNNNNATC	1 cut(s)	51
BseGI	GGATG	2 cut(s)	10, 370
BseJI	GATNNNNATC	1 cut(s)	51
BseLI	CCNNNNNNNGG	2 cut(s)	164, 403
BseNI	ACTGG	2 cut(s)	57, 356
BseRI	GAGGAG	1 cut(s)	221
BseX3I	CGGCCG	1 cut(s)	415
BseXI	GCAGC	5 cut(s)	101, 156, 159, 162, 168
BseYI	CCCAGC	1 cut(s)	428
Bsh1236I	CGCG	1 cut(s)	153
Bsh1285I	CGRYCG	1 cut(s)	418
BshFI	GGCC	2 cut(s)	417, 436
BshTI	ACCGGT	1 cut(s)	17
BsiEI	CGRYCG	1 cut(s)	418
BsiHKCI	CYCGRG	1 cut(s)	388
BsiSI	CCGG	6 cut(s)	18, 80, 124, 136, 374, 418
BslFI	GGGAC	1 cut(s)	475
BslI	CCNNNNNNNGG	2 cut(s)	164, 403
BsmAI	GTCTC	1 cut(s)	68
BsmFI	GGGAC	1 cut(s)	475
BsnI	GGCC	2 cut(s)	417, 436
BsoBI	CYCGRG	1 cut(s)	388
Bsp1286I	GDGCHC	1 cut(s)	339
Bsp143I	GATC	1 cut(s)	46
BspACI	CCGC	4 cut(s)	40, 127, 158, 178
BspANI	GGCC	2 cut(s)	417, 436
BspFNI	CGCG	1 cut(s)	153
BspLI	GGNNCC	2 cut(s)	140, 338
BspMAI	CTGCAG	1 cut(s)	91
BspQI	GCTCTTC	1 cut(s)	251
BsrFI	RCCGGY	4 cut(s)	17, 79, 123, 417
BsrI	ACTGG	2 cut(s)	57, 356
BssAI	RCCGGY	4 cut(s)	17, 79, 123, 417
BssMI	GATC	1 cut(s)	46
Bst6I	CTCTTC	1 cut(s)	251
BstC8I	GCNNGC	1 cut(s)	125
BstF5I	GGATG	2 cut(s)	10, 370
BstFNI	CGCG	1 cut(s)	153
BstHHI	GCGC	1 cut(s)	155
BstKTI	GATC	1 cut(s)	49
BstMAI	GTCTC	1 cut(s)	68
BstMBI	GATC	1 cut(s)	46
BstMCI	CGRYCG	1 cut(s)	418
BstMWI	GCNNNNNNNGC	5 cut(s)	89, 166, 175, 178, 181
BstNSI	RCATGY	1 cut(s)	370
BstSFI	CTRYAG	1 cut(s)	87
BstUI	CGCG	1 cut(s)	153
BstV1I	GCAGC	5 cut(s)	101, 156, 159, 162, 168
BstZI	CGGCCG	1 cut(s)	415
BsuI	GTATCC	1 cut(s)	63
BsuRI	GGCC	2 cut(s)	417, 436
BtsCI	GGATG	2 cut(s)	10, 370
Cac8I	GCNNGC	1 cut(s)	125
CfoI	GCGC	1 cut(s)	155
Cfr10I	RCCGGY	4 cut(s)	17, 79, 123, 417
Cfr13I	GGNCC	2 cut(s)	15, 322
CseI	GACGC	1 cut(s)	18
CspAI	ACCGGT	1 cut(s)	17
CviAII	CATG	3 cut(s)	341, 367, 446
DpnI	GATC	1 cut(s)	48
DpnII	GATC	1 cut(s)	46
EaeI	YGGCCR	1 cut(s)	415
EagI	CGGCCG	1 cut(s)	415
Eam1104I	CTCTTC	1 cut(s)	251
EarI	CTCTTC	1 cut(s)	251
EciI	GGCGGA	1 cut(s)	147
EclXI	CGGCCG	1 cut(s)	415
Eco24I	GRGCYC	1 cut(s)	339
Eco47I	GGWCC	2 cut(s)	15, 322
Eco52I	CGGCCG	1 cut(s)	415
Eco57I	CTGAAG	1 cut(s)	266
Eco88I	CYCGRG	1 cut(s)	388
EcoO109I	RGGNCCY	1 cut(s)	322
EcoT22I	ATGCAT	1 cut(s)	372
EcoT38I	GRGCYC	1 cut(s)	339
FaeI	CATG	3 cut(s)	344, 370, 449
FaqI	GGGAC	1 cut(s)	475
FatI	CATG	3 cut(s)	340, 366, 445
FauI	CCCGC	1 cut(s)	120
FblI	GTMKAC	2 cut(s)	27, 360
Fnu4HI	GCNGC	6 cut(s)	90, 170, 173, 176, 179, 182
FokI	GGATG	2 cut(s)	17, 357
FriOI	GRGCYC	1 cut(s)	339
Fsp4HI	GCNGC	6 cut(s)	90, 170, 173, 176, 179, 182
GlaI	GCGC	1 cut(s)	154
GluI	GCNGC	6 cut(s)	90, 170, 173, 176, 179, 182
GsaI	CCCAGC	1 cut(s)	432
HaeIII	GGCC	2 cut(s)	417, 436
HapII	CCGG	6 cut(s)	18, 80, 124, 136, 374, 418
HgaI	GACGC	1 cut(s)	18
HhaI	GCGC	1 cut(s)	155
Hin1II	CATG	3 cut(s)	344, 370, 449
Hin6I	GCGC	1 cut(s)	153
HinP1I	GCGC	1 cut(s)	153
HincII	GTYRAC	1 cut(s)	28
HindII	GTYRAC	1 cut(s)	28
HinfI	GANTC	1 cut(s)	29
HpaII	CCGG	6 cut(s)	18, 80, 124, 136, 374, 418
Hpy166II	GTNNAC	2 cut(s)	28, 361
Hpy188I	TCNGA	2 cut(s)	73, 383
Hpy8I	GTNNAC	2 cut(s)	28, 361
HpyAV	CCTTC	1 cut(s)	196
HpyCH4V	TGCA	3 cut(s)	89, 370, 483
HpyF10VI	GCNNNNNNNGC	5 cut(s)	89, 166, 175, 178, 181
Hsp92II	CATG	3 cut(s)	344, 370, 449
HspAI	GCGC	1 cut(s)	153
KroI	GCCGGC	1 cut(s)	123
KroNI	GCCGGC	1 cut(s)	125
Kzo9I	GATC	1 cut(s)	46
LguI	GCTCTTC	1 cut(s)	251
LmnI	GCTCC	3 cut(s)	74, 160, 342
Lsp1109I	GCAGC	5 cut(s)	101, 156, 159, 162, 168
LweI	GCATC	1 cut(s)	379
MalI	GATC	1 cut(s)	48
MboI	GATC	1 cut(s)	46
MboII	GAAGA	5 cut(s)	179, 259, 262, 265, 268
MhlI	GDGCHC	1 cut(s)	339
MlyI	GAGTC	1 cut(s)	23
MmeI	TCCRAC	1 cut(s)	406
Mph1103I	ATGCAT	1 cut(s)	372
MreI	CGCCGGCG	1 cut(s)	123
MroNI	GCCGGC	1 cut(s)	123
MspI	CCGG	6 cut(s)	18, 80, 124, 136, 374, 418
MvnI	CGCG	1 cut(s)	153
MwoI	GCNNNNNNNGC	5 cut(s)	89, 166, 175, 178, 181
NaeI	GCCGGC	1 cut(s)	125
NdeII	GATC	1 cut(s)	46
NgoMIV	GCCGGC	1 cut(s)	123
NlaIII	CATG	3 cut(s)	344, 370, 449
NlaIV	GGNNCC	2 cut(s)	140, 338
NmeAIII	GCCGAG	1 cut(s)	16
NsiI	ATGCAT	1 cut(s)	372
NspI	RCATGY	1 cut(s)	370
PciSI	GCTCTTC	1 cut(s)	251
PdiI	GCCGGC	1 cut(s)	125
PinAI	ACCGGT	1 cut(s)	17
PkrI	GCNGC	6 cut(s)	91, 171, 174, 177, 180, 183
PleI	GAGTC	1 cut(s)	23
PpsI	GAGTC	1 cut(s)	23
PpuMI	RGGWCCY	1 cut(s)	322
Psp5II	RGGWCCY	1 cut(s)	322
PspFI	CCCAGC	1 cut(s)	428
PspN4I	GGNNCC	2 cut(s)	140, 338
PspPI	GGNCC	2 cut(s)	15, 322
PspPPI	RGGWCCY	1 cut(s)	322
PstI	CTGCAG	1 cut(s)	91
SalI	GTCGAC	1 cut(s)	26
SapI	GCTCTTC	1 cut(s)	251
SatI	GCNGC	6 cut(s)	90, 170, 173, 176, 179, 182
Sau3AI	GATC	1 cut(s)	46
Sau96I	GGNCC	2 cut(s)	15, 322
SchI	GAGTC	1 cut(s)	23
SduI	GDGCHC	1 cut(s)	339
SetI	ASST	7 cut(s)	246, 269, 327, 334, 395, 399, 414
SfaNI	GCATC	1 cut(s)	379
SfcI	CTRYAG	1 cut(s)	87
SgrAI	CRCCGGYG	1 cut(s)	123
SinI	GGWCC	2 cut(s)	15, 322
SsiI	CCGC	4 cut(s)	40, 127, 158, 178
TaqI	TCGA	2 cut(s)	27, 498
TauI	GCSGC	1 cut(s)	181
TseI	GCWGC	5 cut(s)	89, 169, 172, 175, 181
VpaK11BI	GGWCC	2 cut(s)	15, 322
XceI	RCATGY	1 cut(s)	370
XmiI	GTMKAC	2 cut(s)	27, 360
Zsp2I	ATGCAT	1 cut(s)	372

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.