RchiOBHm_Chr2g0128071

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0002282
Physical Location & Seq
Reverse (-)
42966313 .. 42977145
10833 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ49988

Sequence Viewer

Length: 639 bp
ATGGGACCAAAACCAATGTTTAGAAGAACAAAGAGGGATACAAGTGAACACGCAATTCAGCAAAGAAGAACTAAATCTAATTGTATTTTGTTCGGTGGACATCAATACGATGAGGCTAGATCAAAGAAATCGAAAACAATGTCTGATGTCCAAATTGCTGAAAGATCAAATCAATCTGGGAATATTGATGGATTTGAGTACGATGATGAACGGTTTAGGAATCAGAACCAAAATAATTTCTGTATGGATGACAACAGACGCTCTCCTTCAACTGTGGTTGCACAAGGGAATCAATGTAGTGCAATTAACTCGAGGAGGTGGAAAACATTATCTCAACCAATAAGGACAAGAGAGAATCAGCTTGGGGAAATGAGCAATCAAAATGTTGACATAATGGAAGATCGTGATCAACAAGAGGTTGTTCAGGTCACAGATGAATATCAACATTCATACGGTCAAGCATCATATCAAAGAAGTAAACAAAGATCCGCTATTGCATATGAAGATTCAGGAATCAGCAACAGTGAAACCTCAGTGAGAGCTCAACTTTTTGAAATCAATATCAACACAAGAGTTACAACATTTGCTAAAGAAAAGTTCTCCAGTATTTCAGATTTTGATTGTAAATTGCTGGGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

212

Amino Acids

24.48

Weight (kDa)

8.33

Isoelectric Point (pI)

57.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 489
AclWI GGATC 1 cut(s) 480
AfaI GTAC 1 cut(s) 200
AgsI TTSAA 2 cut(s) 270, 554
AluBI AGCT 2 cut(s) 361, 542
AluI AGCT 2 cut(s) 361, 542
Alw21I GWGCWC 1 cut(s) 544
AlwI GGATC 1 cut(s) 480
Ama87I CYCGRG 1 cut(s) 310
ArsI GACNNNNNNTTYG 2 cut(s) 125, 157
AspS9I GGNCC 1 cut(s) 5
AvaI CYCGRG 1 cut(s) 310
AvaII GGWCC 1 cut(s) 5
BanII GRGCYC 1 cut(s) 544
Bbv12I GWGCWC 1 cut(s) 544
BccI CCATC 1 cut(s) 182
BcgI CGANNNNNNTGC 2 cut(s) 291, 325
BciVI GTATCC 1 cut(s) 31
BclI TGATCA 1 cut(s) 406
BfaI CTAG 1 cut(s) 117
BfuI GTATCC 1 cut(s) 31
Bme18I GGWCC 1 cut(s) 5
BmeT110I CYCGRG 1 cut(s) 310
BmgT120I GGNCC 1 cut(s) 5
BmiI GGNNCC 1 cut(s) 6
BmsI GCATC 1 cut(s) 470
BpmI CTGGAG 1 cut(s) 586
BsaBI GATNNNNATC 2 cut(s) 405, 438
Bse1I ACTGG 1 cut(s) 603
Bse8I GATNNNNATC 2 cut(s) 405, 438
BseGI GGATG 1 cut(s) 253
BseJI GATNNNNATC 2 cut(s) 405, 438
BseMII CTCAG 1 cut(s) 546
BseNI ACTGG 1 cut(s) 603
BseRI GAGGAG 1 cut(s) 328
BseYI CCCAGC 1 cut(s) 631
BsiHKAI GWGCWC 1 cut(s) 544
BsiHKCI CYCGRG 1 cut(s) 310
BslFI GGGAC 1 cut(s) 18
BsmFI GGGAC 1 cut(s) 18
BsoBI CYCGRG 1 cut(s) 310
Bsp1286I GDGCHC 1 cut(s) 544
Bsp143I GATC 5 cut(s) 119, 164, 400, 406, 485
BspACI CCGC 1 cut(s) 489
BspCNI CTCAG 1 cut(s) 545
BspLI GGNNCC 1 cut(s) 6
BspPI GGATC 1 cut(s) 480
BsrI ACTGG 1 cut(s) 603
BssMI GATC 5 cut(s) 119, 164, 400, 406, 485
Bst4CI ACNGT 4 cut(s) 213, 274, 455, 524
BstDEI CTNAG 1 cut(s) 532
BstF5I GGATG 1 cut(s) 253
BstKTI GATC 5 cut(s) 122, 167, 403, 409, 488
BstMBI GATC 5 cut(s) 119, 164, 400, 406, 485
BstX2I RGATCY 1 cut(s) 485
BstYI RGATCY 1 cut(s) 485
BsuI GTATCC 1 cut(s) 31
BtsCI GGATG 1 cut(s) 253
BtsIMutI CAGTG 2 cut(s) 529, 540
Cfr13I GGNCC 1 cut(s) 5
CseI GACGC 1 cut(s) 267
Csp6I GTAC 1 cut(s) 199
CviJI RGCY 3 cut(s) 116, 361, 542
CviKI_1 RGCY 3 cut(s) 116, 361, 542
CviQI GTAC 1 cut(s) 199
DdeI CTNAG 1 cut(s) 532
DpnI GATC 5 cut(s) 121, 166, 402, 408, 487
DpnII GATC 5 cut(s) 119, 164, 400, 406, 485
Ecl136II GAGCTC 1 cut(s) 542
Eco24I GRGCYC 1 cut(s) 544
Eco47I GGWCC 1 cut(s) 5
Eco53kI GAGCTC 1 cut(s) 542
Eco88I CYCGRG 1 cut(s) 310
EcoICRI GAGCTC 1 cut(s) 542
EcoT38I GRGCYC 1 cut(s) 544
FaiI YATR 6 cut(s) 245, 392, 451, 466, 499, 501
FaqI GGGAC 1 cut(s) 18
FauNDI CATATG 1 cut(s) 499
FbaI TGATCA 1 cut(s) 406
FokI GGATG 1 cut(s) 260
FriOI GRGCYC 1 cut(s) 544
FspBI CTAG 1 cut(s) 117
GsaI CCCAGC 1 cut(s) 635
GsuI CTGGAG 1 cut(s) 586
HgaI GACGC 1 cut(s) 267
HincII GTYRAC 1 cut(s) 388
HindII GTYRAC 1 cut(s) 388
HinfI GANTC 5 cut(s) 220, 289, 355, 506, 513
Hpy166II GTNNAC 4 cut(s) 47, 98, 388, 479
Hpy188I TCNGA 3 cut(s) 145, 225, 613
Hpy188III TCNNGA 2 cut(s) 404, 510
Hpy8I GTNNAC 4 cut(s) 47, 98, 388, 479
HpyAV CCTTC 1 cut(s) 276
HpyCH4III ACNGT 4 cut(s) 213, 274, 455, 524
HpyCH4V TGCA 3 cut(s) 281, 302, 497
HpyF3I CTNAG 1 cut(s) 532
Ksp22I TGATCA 1 cut(s) 406
Kzo9I GATC 5 cut(s) 119, 164, 400, 406, 485
LpnPI CCDG 5 cut(s) 162, 410, 495, 616, 617
LweI GCATC 1 cut(s) 470
MaeI CTAG 1 cut(s) 117
MaeIII GTNAC 2 cut(s) 427, 574
MalI GATC 5 cut(s) 121, 166, 402, 408, 487
MboI GATC 5 cut(s) 119, 164, 400, 406, 485
MboII GAAGA 4 cut(s) 36, 78, 410, 515
MflI RGATCY 1 cut(s) 485
MhlI GDGCHC 1 cut(s) 544
MluCI AATT 6 cut(s) 54, 79, 153, 235, 303, 626
MnlI CCTC 6 cut(s) 27, 106, 306, 309, 409, 541
MseI TTAA 1 cut(s) 306
NdeI CATATG 1 cut(s) 499
NdeII GATC 5 cut(s) 119, 164, 400, 406, 485
NlaIV GGNNCC 1 cut(s) 6
NmuCI GTSAC 1 cut(s) 427
PaeR7I CTCGAG 1 cut(s) 310
PfeI GAWTC 5 cut(s) 220, 289, 355, 506, 513
Psp124BI GAGCTC 1 cut(s) 544
PspFI CCCAGC 1 cut(s) 631
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 1 cut(s) 5
PspXI VCTCGAGB 1 cut(s) 310
PsuI RGATCY 1 cut(s) 485
RsaI GTAC 1 cut(s) 200
RsaNI GTAC 1 cut(s) 199
SacI GAGCTC 1 cut(s) 544
SaqAI TTAA 1 cut(s) 306
Sau3AI GATC 5 cut(s) 119, 164, 400, 406, 485
Sau96I GGNCC 1 cut(s) 5
SduI GDGCHC 1 cut(s) 544
SetI ASST 6 cut(s) 320, 363, 420, 429, 533, 544
SfaNI GCATC 1 cut(s) 470
Sfr274I CTCGAG 1 cut(s) 310
SinI GGWCC 1 cut(s) 5
SlaI CTCGAG 1 cut(s) 310
SmlI CTYRAG 1 cut(s) 310
SmoI CTYRAG 1 cut(s) 310
Sse9I AATT 6 cut(s) 54, 79, 153, 235, 303, 626
SsiI CCGC 1 cut(s) 489
SspI AATATT 1 cut(s) 184
SspMI CTAG 1 cut(s) 117
SstI GAGCTC 1 cut(s) 544
TaaI ACNGT 4 cut(s) 213, 274, 455, 524
TaqI TCGA 2 cut(s) 131, 311
TasI AATT 6 cut(s) 54, 79, 153, 235, 303, 626
TfiI GAWTC 5 cut(s) 220, 289, 355, 506, 513
Tru1I TTAA 1 cut(s) 306
Tru9I TTAA 1 cut(s) 306
TscAI CASTG 2 cut(s) 529, 540
TseFI GTSAC 1 cut(s) 427
Tsp45I GTSAC 1 cut(s) 427
TspDTI ATGAA 4 cut(s) 222, 438, 450, 516
TspRI CASTG 2 cut(s) 529, 540
VpaK11BI GGWCC 1 cut(s) 5
XhoI CTCGAG 1 cut(s) 310
XspI CTAG 1 cut(s) 117
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.