Rroxscaffold_177G00434380

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000177
Physical Location & Seq
Reverse (-)
326712 .. 327047
336 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_177G00434380.1

Sequence Viewer

Length: 336 bp
ATGTTTTGTCGTCTTTCATCGGTTATGGATTTATGTTTTGTGCTCTCTGCTACTTTGTGTGTTTTTTTTTTTGTTTTACTGGAGAACAGTTTTTCGGTGTATGTTTTAGTAGTGGAGTTGAGTTTTGATGGCTTTGTATGGCTCTTCGATTGCTGGTTGGTTTCTGATATGAAATCACTACTCACTGAATCAGTAAATGATAGTTTTTTGTTTTTTGTTTTTGGTGATTTAGGTGTCAAGTGCTGGGTATGGTCACAATCTGAACTGTTCAAAGGTGCAATCATCCATCTTTGGGGCTTCTATCTCAACCTGGTCGTCTTCTTTACAGTTGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

111

Amino Acids

12.9

Weight (kDa)

4.27

Isoelectric Point (pI)

32.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfiI CCNNNNNNNGG 1 cut(s) 292
AgsI TTSAA 1 cut(s) 271
AjnI CCWGG 1 cut(s) 309
Alw21I GWGCWC 1 cut(s) 45
AsuHPI GGTGA 1 cut(s) 236
BbsI GAAGAC 1 cut(s) 310
Bbv12I GWGCWC 1 cut(s) 45
BccI CCATC 2 cut(s) 122, 294
BciT130I CCWGG 1 cut(s) 311
Bme1390I CCNGG 1 cut(s) 311
BmrFI CCNGG 1 cut(s) 311
BpiI GAAGAC 1 cut(s) 310
BpmI CTGGAG 1 cut(s) 101
Bsc4I CCNNNNNNNGG 1 cut(s) 292
Bse1I ACTGG 1 cut(s) 84
BseBI CCWGG 1 cut(s) 311
BseGI GGATG 1 cut(s) 282
BseLI CCNNNNNNNGG 1 cut(s) 292
BseNI ACTGG 1 cut(s) 84
BseYI CCCAGC 1 cut(s) 243
BsiHKAI GWGCWC 1 cut(s) 45
BslI CCNNNNNNNGG 1 cut(s) 292
Bsp1286I GDGCHC 1 cut(s) 45
BspQI GCTCTTC 1 cut(s) 149
BsrI ACTGG 1 cut(s) 84
Bst2UI CCWGG 1 cut(s) 311
Bst4CI ACNGT 3 cut(s) 89, 267, 328
Bst6I CTCTTC 1 cut(s) 149
BstF5I GGATG 1 cut(s) 282
BstNI CCWGG 1 cut(s) 311
BstSCI CCNGG 1 cut(s) 309
BstV2I GAAGAC 1 cut(s) 310
BtsCI GGATG 1 cut(s) 282
BtsIMutI CAGTG 1 cut(s) 183
CsiI ACCWGGT 1 cut(s) 309
CviJI RGCY 3 cut(s) 132, 142, 297
CviKI_1 RGCY 3 cut(s) 132, 142, 297
Eam1104I CTCTTC 1 cut(s) 149
EarI CTCTTC 1 cut(s) 149
EcoRII CCWGG 1 cut(s) 309
FaiI YATR 6 cut(s) 26, 34, 102, 139, 170, 250
FokI GGATG 1 cut(s) 269
GsaI CCCAGC 1 cut(s) 247
GsuI CTGGAG 1 cut(s) 101
HinfI GANTC 1 cut(s) 188
HphI GGTGA 1 cut(s) 236
Hpy188I TCNGA 2 cut(s) 166, 262
HpyCH4III ACNGT 3 cut(s) 89, 267, 328
HpyCH4V TGCA 1 cut(s) 278
LguI GCTCTTC 1 cut(s) 149
LpnPI CCDG 5 cut(s) 65, 139, 229, 296, 323
MabI ACCWGGT 1 cut(s) 309
MaeIII GTNAC 1 cut(s) 252
MboII GAAGA 2 cut(s) 136, 310
MhlI GDGCHC 1 cut(s) 45
MspR9I CCNGG 1 cut(s) 311
MvaI CCWGG 1 cut(s) 311
NmuCI GTSAC 1 cut(s) 252
PciSI GCTCTTC 1 cut(s) 149
PfeI GAWTC 1 cut(s) 188
Psp6I CCWGG 1 cut(s) 309
PspFI CCCAGC 1 cut(s) 243
PspGI CCWGG 1 cut(s) 309
SapI GCTCTTC 1 cut(s) 149
ScrFI CCNGG 1 cut(s) 311
SduI GDGCHC 1 cut(s) 45
SetI ASST 3 cut(s) 235, 277, 312
SexAI ACCWGGT 1 cut(s) 309
SgeI CNNG 6 cut(s) 92, 166, 250, 256, 322, 323
StyD4I CCNGG 1 cut(s) 309
TaaI ACNGT 3 cut(s) 89, 267, 328
TaqI TCGA 1 cut(s) 147
TfiI GAWTC 1 cut(s) 188
TscAI CASTG 1 cut(s) 190
TseFI GTSAC 1 cut(s) 252
Tsp45I GTSAC 1 cut(s) 252
TspDTI ATGAA 2 cut(s) 6, 185
TspRI CASTG 1 cut(s) 190
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.