Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002282

Physical Location & Seq

Genomic Coordinates Forward (+)

62087958 .. 62088211

Gene Structure 254 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ33467

Sequence Viewer

CDS Protein Promoter (2k)

Length: 231 bp

ATGTTTTGTCATCTTTCATCGGTTATGGATTTATGTTTTGTGCTCTCTGCTACTTTGTGTGTGTGTGTGTTTTTTTTTTTACTGGAGAACAGTTTTTCGGTGTATGTTTTAGTAGTGGAGTTGAGTTTTGATGGCTTTGTATGGCTTTTCGATTGCTGGTTGGTTTCTGATATGAAATCACTACTCACTGAATCAGTAAATGATAGTTTTTTTTCTTTCTTTTTTTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

76

Amino Acids

8.9

Weight (kDa)

4.05

Isoelectric Point (pI)

30.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002282)

Species	Orthologous Gene IDs
pyrus_communis	pycom10g17910
rosa_chinensis	RchiOBHm_Chr2g0127881 RchiOBHm_Chr2g0128071 RchiOBHm_Chr2g0168141 RchiOBHm_Chr4g0394061 RchiOBHm_Chr4g0409481 RchiOBHm_Chr5g0057941 RchiOBHm_Chr6g0289331
rosa_multiflora	Rmu_sc0001136.1_g000034 Rmu_sc0002501.1_g000016 Rmu_sc0003941.1_g000003 Rmu_sc0012303.1_g000002 Rmu_sc0018337.1_g000005 Rmu_sc0023137.1_g000011 Rmu_sc0037818.1_g000001 Rmu_ssc0000118.1_g000006
rosa_roxburghii	Rroxscaffold_177G00434380 Rroxscaffold_1G00074020 Rroxscaffold_2G00119630 Rroxscaffold_4G00297870 Rroxscaffold_4G00303680 Rroxscaffold_4G00311340 Rroxscaffold_5G00333250 Rroxscaffold_5G00333260 Rroxscaffold_5G00365770 Rroxscaffold_5G00382860 Rroxscaffold_6G00423070 Rroxscaffold_7G00193890 Rroxscaffold_7G00201810
rosa_rugosa	Rorug05G0198200 Rorug05G0255000 Rorug05G0428300
rosa_samantha	Rh2BG339100 Rh2BG613700 Rh2CG365300 Rh5BG509200 Rh5DG521900 Rh6AG198000 Rh6BG265900 Rh6CG023900 Rh6DG023800 Rh7DG045500
rosa_wichuraiana	Rw0G014170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Alw21I	GWGCWC	1 cut(s)	45
Bbv12I	GWGCWC	1 cut(s)	45
BccI	CCATC	1 cut(s)	125
BpmI	CTGGAG	1 cut(s)	104
Bse1I	ACTGG	1 cut(s)	87
BseNI	ACTGG	1 cut(s)	87
BsiHKAI	GWGCWC	1 cut(s)	45
Bsp1286I	GDGCHC	1 cut(s)	45
BsrI	ACTGG	1 cut(s)	87
Bst4CI	ACNGT	1 cut(s)	92
BtsIMutI	CAGTG	1 cut(s)	186
CviJI	RGCY	2 cut(s)	135, 145
CviKI_1	RGCY	2 cut(s)	135, 145
FaiI	YATR	5 cut(s)	26, 34, 105, 142, 173
GsuI	CTGGAG	1 cut(s)	104
HinfI	GANTC	1 cut(s)	191
Hpy188I	TCNGA	1 cut(s)	169
HpyCH4III	ACNGT	1 cut(s)	92
LpnPI	CCDG	2 cut(s)	68, 142
MhlI	GDGCHC	1 cut(s)	45
PfeI	GAWTC	1 cut(s)	191
SduI	GDGCHC	1 cut(s)	45
SgeI	CNNG	2 cut(s)	95, 169
TaaI	ACNGT	1 cut(s)	92
TaqI	TCGA	1 cut(s)	150
TfiI	GAWTC	1 cut(s)	191
TscAI	CASTG	1 cut(s)	193
TspDTI	ATGAA	2 cut(s)	6, 188
TspRI	CASTG	1 cut(s)	193

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.