Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0002282

Physical Location & Seq

Genomic Coordinates Forward (+)

33853506 .. 33867956

Gene Structure 14451 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00311340.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGTTCTTAACAACTCTCCAGAAGGAATTGAGGCCTGAAATTGAAGTTTTACAACGAAATCAAGCTCGCCATTTTCTCGCAATTTTCGCCGGTTTCGGAAATTTTCCGGCCAAGTCAACTGTTCTAGGTGGGCCCCGTAACATGGCTAGTCCCCCCTACAACATGCATCCGGTAGTCCGACACCCGAGCTACCTCGCTATGGTGGAGGTCGGCCGGTACCTCGTAGGGAGGTCACCCTCCCATGATCTCCAAGAGGCTTCAAGAGAAGCAATATGTGATGTTTTACGGTATGCATATGTTGTTGGGTATGCATATGTTGTTTCGAATTCTAGTACCAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

113

Amino Acids

12.67

Weight (kDa)

9.25

Isoelectric Point (pI)

66.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002282)

Species	Orthologous Gene IDs
pyrus_communis	pycom10g17910
rosa_chinensis	RchiOBHm_Chr2g0127881 RchiOBHm_Chr2g0128071 RchiOBHm_Chr2g0168141 RchiOBHm_Chr4g0394061 RchiOBHm_Chr4g0409481 RchiOBHm_Chr5g0057941 RchiOBHm_Chr6g0289331
rosa_multiflora	Rmu_sc0001136.1_g000034 Rmu_sc0002501.1_g000016 Rmu_sc0003941.1_g000003 Rmu_sc0012303.1_g000002 Rmu_sc0018337.1_g000005 Rmu_sc0023137.1_g000011 Rmu_sc0037818.1_g000001 Rmu_ssc0000118.1_g000006
rosa_roxburghii	Rroxscaffold_177G00434380 Rroxscaffold_1G00074020 Rroxscaffold_2G00119630 Rroxscaffold_4G00297870 Rroxscaffold_4G00303680 Rroxscaffold_4G00311340 Rroxscaffold_5G00333250 Rroxscaffold_5G00333260 Rroxscaffold_5G00365770 Rroxscaffold_5G00382860 Rroxscaffold_6G00423070 Rroxscaffold_7G00193890 Rroxscaffold_7G00201810
rosa_rugosa	Rorug05G0198200 Rorug05G0255000 Rorug05G0428300
rosa_samantha	Rh2BG339100 Rh2BG613700 Rh2CG365300 Rh5BG509200 Rh5DG521900 Rh6AG198000 Rh6BG265900 Rh6CG023900 Rh6DG023800 Rh7DG045500
rosa_wichuraiana	Rw0G014170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	216
AccB1I	GGYRCC	1 cut(s)	216
AcoI	YGGCCR	2 cut(s)	108, 211
AcsI	RAATTY	2 cut(s)	100, 325
AfaI	GTAC	2 cut(s)	218, 334
AfiI	CCNNNNNNNGG	2 cut(s)	142, 199
AgsI	TTSAA	2 cut(s)	44, 261
AluBI	AGCT	2 cut(s)	65, 189
AluI	AGCT	2 cut(s)	65, 189
Ama87I	CYCGRG	1 cut(s)	184
AoxI	GGCC	4 cut(s)	32, 108, 131, 211
ApaI	GGGCCC	1 cut(s)	135
ApoI	RAATTY	2 cut(s)	100, 325
Asp718I	GGTACC	1 cut(s)	216
AspS9I	GGNCC	2 cut(s)	131, 132
AsuHPI	GGTGA	1 cut(s)	225
AsuII	TTCGAA	1 cut(s)	323
AvaI	CYCGRG	1 cut(s)	184
BaeGI	GKGCMC	1 cut(s)	135
BanI	GGYRCC	1 cut(s)	216
BanII	GRGCYC	1 cut(s)	135
BfaI	CTAG	3 cut(s)	125, 147, 330
BmeT110I	CYCGRG	1 cut(s)	184
BmgT120I	GGNCC	2 cut(s)	131, 132
BmiI	GGNNCC	3 cut(s)	133, 134, 218
BmsI	GCATC	1 cut(s)	175
Bpu14I	TTCGAA	1 cut(s)	323
BsaWI	WCCGGW	1 cut(s)	169
Bsc4I	CCNNNNNNNGG	2 cut(s)	142, 199
Bse118I	RCCGGY	2 cut(s)	89, 213
BseGI	GGATG	1 cut(s)	166
BseLI	CCNNNNNNNGG	2 cut(s)	142, 199
BseSI	GKGCMC	1 cut(s)	135
BseX3I	CGGCCG	1 cut(s)	211
Bsh1285I	CGRYCG	1 cut(s)	214
BshFI	GGCC	4 cut(s)	34, 110, 133, 213
BshNI	GGYRCC	1 cut(s)	216
BsiEI	CGRYCG	1 cut(s)	214
BsiHKCI	CYCGRG	1 cut(s)	184
BsiSI	CCGG	4 cut(s)	90, 107, 170, 214
BslFI	GGGAC	1 cut(s)	135
BslI	CCNNNNNNNGG	2 cut(s)	142, 199
BsmFI	GGGAC	1 cut(s)	135
BsnI	GGCC	4 cut(s)	34, 110, 133, 213
BsoBI	CYCGRG	1 cut(s)	184
Bsp119I	TTCGAA	1 cut(s)	323
Bsp120I	GGGCCC	1 cut(s)	131
Bsp1286I	GDGCHC	1 cut(s)	135
Bsp143I	GATC	1 cut(s)	244
BspANI	GGCC	4 cut(s)	34, 110, 133, 213
BspLI	GGNNCC	3 cut(s)	133, 134, 218
BspT104I	TTCGAA	1 cut(s)	323
BspT107I	GGYRCC	1 cut(s)	216
BsrFI	RCCGGY	2 cut(s)	89, 213
BssAI	RCCGGY	2 cut(s)	89, 213
BssMI	GATC	1 cut(s)	244
Bst4CI	ACNGT	2 cut(s)	121, 288
BstBI	TTCGAA	1 cut(s)	323
BstC8I	GCNNGC	1 cut(s)	67
BstEII	GGTNACC	1 cut(s)	231
BstF5I	GGATG	1 cut(s)	166
BstKTI	GATC	1 cut(s)	247
BstMBI	GATC	1 cut(s)	244
BstMCI	CGRYCG	1 cut(s)	214
BstMWI	GCNNNNNNNGC	1 cut(s)	86
BstNSI	RCATGY	1 cut(s)	166
BstPI	GGTNACC	1 cut(s)	231
BstSLI	GKGCMC	1 cut(s)	135
BstZI	CGGCCG	1 cut(s)	211
BsuRI	GGCC	4 cut(s)	34, 110, 133, 213
BtsCI	GGATG	1 cut(s)	166
Cac8I	GCNNGC	1 cut(s)	67
Cfr10I	RCCGGY	2 cut(s)	89, 213
Cfr13I	GGNCC	2 cut(s)	131, 132
Csp6I	GTAC	2 cut(s)	217, 333
CviAII	CATG	3 cut(s)	142, 163, 242
CviJI	RGCY	8 cut(s)	34, 65, 110, 133, 146, 189, 213, 257
CviKI_1	RGCY	8 cut(s)	34, 65, 110, 133, 146, 189, 213, 257
CviQI	GTAC	2 cut(s)	217, 333
DpnI	GATC	1 cut(s)	246
DpnII	GATC	1 cut(s)	244
EaeI	YGGCCR	2 cut(s)	108, 211
EagI	CGGCCG	1 cut(s)	211
EclXI	CGGCCG	1 cut(s)	211
Eco147I	AGGCCT	1 cut(s)	34
Eco24I	GRGCYC	1 cut(s)	135
Eco52I	CGGCCG	1 cut(s)	211
Eco88I	CYCGRG	1 cut(s)	184
Eco91I	GGTNACC	1 cut(s)	231
EcoO109I	RGGNCCY	1 cut(s)	132
EcoO65I	GGTNACC	1 cut(s)	231
EcoRI	GAATTC	1 cut(s)	325
EcoT22I	ATGCAT	3 cut(s)	168, 295, 313
EcoT38I	GRGCYC	1 cut(s)	135
FaeI	CATG	3 cut(s)	145, 166, 245
FaqI	GGGAC	1 cut(s)	135
FatI	CATG	3 cut(s)	141, 162, 241
FauNDI	CATATG	2 cut(s)	295, 313
FokI	GGATG	1 cut(s)	153
FriOI	GRGCYC	1 cut(s)	135
FspBI	CTAG	3 cut(s)	125, 147, 330
HaeIII	GGCC	4 cut(s)	34, 110, 133, 213
HapII	CCGG	4 cut(s)	90, 107, 170, 214
Hin1II	CATG	3 cut(s)	145, 166, 245
HincII	GTYRAC	1 cut(s)	117
HindII	GTYRAC	1 cut(s)	117
HpaII	CCGG	4 cut(s)	90, 107, 170, 214
HphI	GGTGA	1 cut(s)	225
Hpy166II	GTNNAC	1 cut(s)	117
Hpy188I	TCNGA	2 cut(s)	98, 179
Hpy188III	TCNNGA	2 cut(s)	19, 261
Hpy8I	GTNNAC	1 cut(s)	117
HpyAV	CCTTC	1 cut(s)	16
HpyCH4III	ACNGT	2 cut(s)	121, 288
HpyCH4V	TGCA	3 cut(s)	166, 293, 311
HpyF10VI	GCNNNNNNNGC	1 cut(s)	86
Hsp92II	CATG	3 cut(s)	145, 166, 245
KpnI	GGTACC	1 cut(s)	220
Kzo9I	GATC	1 cut(s)	244
LpnPI	CCDG	6 cut(s)	32, 48, 103, 120, 183, 227
LweI	GCATC	1 cut(s)	175
MaeI	CTAG	3 cut(s)	125, 147, 330
MaeIII	GTNAC	2 cut(s)	137, 231
MalI	GATC	1 cut(s)	246
MboI	GATC	1 cut(s)	244
MhlI	GDGCHC	1 cut(s)	135
MluCI	AATT	5 cut(s)	26, 39, 81, 100, 325
MmeI	TCCRAC	1 cut(s)	202
MnlI	CCTC	7 cut(s)	24, 199, 203, 222, 230, 247, 247
Mph1103I	ATGCAT	3 cut(s)	168, 295, 313
MseI	TTAA	1 cut(s)	8
MspI	CCGG	4 cut(s)	90, 107, 170, 214
MwoI	GCNNNNNNNGC	1 cut(s)	86
NdeI	CATATG	2 cut(s)	295, 313
NdeII	GATC	1 cut(s)	244
NlaIII	CATG	3 cut(s)	145, 166, 245
NlaIV	GGNNCC	3 cut(s)	133, 134, 218
NmuCI	GTSAC	1 cut(s)	231
NsiI	ATGCAT	3 cut(s)	168, 295, 313
NspI	RCATGY	1 cut(s)	166
NspV	TTCGAA	1 cut(s)	323
PceI	AGGCCT	1 cut(s)	34
PspEI	GGTNACC	1 cut(s)	231
PspN4I	GGNNCC	3 cut(s)	133, 134, 218
PspOMI	GGGCCC	1 cut(s)	131
PspPI	GGNCC	2 cut(s)	131, 132
RsaI	GTAC	2 cut(s)	218, 334
RsaNI	GTAC	2 cut(s)	217, 333
SaqAI	TTAA	1 cut(s)	8
Sau3AI	GATC	1 cut(s)	244
Sau96I	GGNCC	2 cut(s)	131, 132
SduI	GDGCHC	1 cut(s)	135
SetI	ASST	7 cut(s)	67, 130, 191, 195, 210, 222, 233
SfaNI	GCATC	1 cut(s)	175
SfuI	TTCGAA	1 cut(s)	323
Sse9I	AATT	5 cut(s)	26, 39, 81, 100, 325
SseBI	AGGCCT	1 cut(s)	34
SspMI	CTAG	3 cut(s)	125, 147, 330
StuI	AGGCCT	1 cut(s)	34
TaaI	ACNGT	2 cut(s)	121, 288
TaqI	TCGA	1 cut(s)	323
TasI	AATT	5 cut(s)	26, 39, 81, 100, 325
Tru1I	TTAA	1 cut(s)	8
Tru9I	TTAA	1 cut(s)	8
TseFI	GTSAC	1 cut(s)	231
Tsp45I	GTSAC	1 cut(s)	231
XapI	RAATTY	2 cut(s)	100, 325
XceI	RCATGY	1 cut(s)	166
XspI	CTAG	3 cut(s)	125, 147, 330
Zsp2I	ATGCAT	3 cut(s)	168, 295, 313

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.