Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0001299

Physical Location & Seq

Genomic Coordinates Reverse (-)

503374 .. 503896

Gene Structure 523 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 261 bp

ATGCGTTTTGTTTCAGCTACCTTCATTCTCATCCTACTTTTAGCCACTATTGAGATGGGGCCAATGGCCGTTGAGGGAAGGAGTGGCATGACTAGCAAGGGAGCAGCTGAGAAAAAGACGTGCGATTCTCATCCGAGTAGCAAGTTCAAGGGAGTGTGCTTCTTCACAAACAACTGCGTAGACACCTGCAAATTAGAGGGCTCCAGTGGAGGACAATGCCGTGGCTTCCGCCGTATATGCATATGCACCAAACAATGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Gamma-thionin

Protein Analysis

87

Amino Acids

9.29

Weight (kDa)

9.06

Isoelectric Point (pI)

35.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Gamma-thionin	PF00304	40 - 86	6.7e-12	Gamma-thionin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001299)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31953 AT2G31957
fragaria_vesca	FvH4_1g21320 FvH4_6g22740
malus_domestica	MD02G1207600.v1.1 MD11G1108400.v1.1 MD11G1108800.v1.1 MD11G1113600.v1.1 MD12G1061400.v1.1 MD12G1061700.v1.1 MD12G1121400.v1.1 MD13G1011400.v1.1 MD13G1011500.v1.1 MD13G1011600.v1.1 MD13G1011700.v1.1 MD13G1011800.v1.1 MD13G1012000.v1.1 MD13G1012100.v1.1 MD14G1061400.v1.1 MD14G1061900.v1.1 MD14G1062000.v1.1 MD14G1062100.v1.1 MD14G1073000.v1.1 MD16G1008800.v1.1 MD16G1008900.v1.1
prunus_persica	Prupe.1G341600_v2.0.a1 Prupe.1G341700_v2.0.a1 Prupe.7G070800_v2.0.a1 Prupe.7G070800_v2.0.a1 Prupe.7G070900_v2.0.a1 Prupe.7G071000_v2.0.a1 Prupe.7G071100_v2.0.a1 Prupe.7G071200_v2.0.a1 Prupe.7G071300_v2.0.a1 Prupe.7G071400_v2.0.a1 Prupe.7G073300_v2.0.a1
pyrus_communis	pycom11g08960 pycom11g08970 pycom12g12050 pycom13g00950 pycom13g00960 pycom13g00970 pycom13g00990 pycom16g00850
rosa_chinensis	RchiOBHm_Chr2g0115151
rosa_roxburghii	Rroxscaffold_2G00130630 Rroxscaffold_2G00139970 Rroxscaffold_6G00401520
rosa_rugosa	Rorug02G0111600 Rorug02G0194100 Rorug03G0183000
rosa_samantha	Rh2BG262100 Rh3BG267000
rosa_wichuraiana	Rw2G012500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	194
Acc36I	ACCTGC	1 cut(s)	194
AccI	GTMKAC	1 cut(s)	180
AciI	CCGC	1 cut(s)	229
AcoI	YGGCCR	1 cut(s)	66
AgsI	TTSAA	1 cut(s)	148
AjiI	CACGTC	1 cut(s)	120
AluBI	AGCT	2 cut(s)	17, 107
AluI	AGCT	2 cut(s)	17, 107
AoxI	GGCC	2 cut(s)	59, 66
ApeKI	GCWGC	1 cut(s)	104
AspS9I	GGNCC	1 cut(s)	59
BanII	GRGCYC	1 cut(s)	203
BbvI	GCAGC	1 cut(s)	116
BccI	CCATC	1 cut(s)	49
BceAI	ACGGC	3 cut(s)	53, 204, 216
BfaI	CTAG	1 cut(s)	93
BfuAI	ACCTGC	1 cut(s)	194
BisI	GCNGC	1 cut(s)	105
BlsI	GCNGC	1 cut(s)	106
BmgBI	CACGTC	1 cut(s)	120
BmgT120I	GGNCC	1 cut(s)	59
BmiI	GGNNCC	2 cut(s)	60, 202
BpmI	CTGGAG	1 cut(s)	187
BsaBI	GATNNNNATC	1 cut(s)	129
BsaJI	CCNNGG	1 cut(s)	220
Bse1I	ACTGG	1 cut(s)	204
Bse8I	GATNNNNATC	1 cut(s)	129
BseDI	CCNNGG	1 cut(s)	220
BseGI	GGATG	2 cut(s)	30, 130
BseJI	GATNNNNATC	1 cut(s)	129
BseMII	CTCAG	1 cut(s)	99
BseNI	ACTGG	1 cut(s)	204
BseXI	GCAGC	1 cut(s)	116
BshFI	GGCC	2 cut(s)	61, 68
BsnI	GGCC	2 cut(s)	61, 68
Bsp1286I	GDGCHC	1 cut(s)	203
BspACI	CCGC	1 cut(s)	229
BspANI	GGCC	2 cut(s)	61, 68
BspCNI	CTCAG	1 cut(s)	100
BspLI	GGNNCC	2 cut(s)	60, 202
BspMI	ACCTGC	1 cut(s)	194
BsrI	ACTGG	1 cut(s)	204
BssECI	CCNNGG	1 cut(s)	220
BstDEI	CTNAG	1 cut(s)	108
BstDSI	CCRYGG	1 cut(s)	220
BstF5I	GGATG	2 cut(s)	30, 130
BstMWI	GCNNNNNNNGC	2 cut(s)	93, 237
BstV1I	GCAGC	1 cut(s)	116
BsuRI	GGCC	2 cut(s)	61, 68
BtgI	CCRYGG	1 cut(s)	220
BtrI	CACGTC	1 cut(s)	120
BtsCI	GGATG	2 cut(s)	30, 130
BtsIMutI	CAGTG	1 cut(s)	211
BveI	ACCTGC	1 cut(s)	194
Cfr13I	GGNCC	1 cut(s)	59
CviAII	CATG	1 cut(s)	88
CviJI	RGCY	7 cut(s)	17, 44, 61, 68, 107, 201, 225
CviKI_1	RGCY	7 cut(s)	17, 44, 61, 68, 107, 201, 225
DdeI	CTNAG	1 cut(s)	108
EaeI	YGGCCR	1 cut(s)	66
EciI	GGCGGA	1 cut(s)	218
Eco24I	GRGCYC	1 cut(s)	203
EcoT22I	ATGCAT	1 cut(s)	242
EcoT38I	GRGCYC	1 cut(s)	203
FaeI	CATG	1 cut(s)	91
FaiI	YATR	5 cut(s)	89, 236, 238, 242, 244
FatI	CATG	1 cut(s)	87
FauNDI	CATATG	1 cut(s)	242
FblI	GTMKAC	1 cut(s)	180
Fnu4HI	GCNGC	1 cut(s)	105
FokI	GGATG	2 cut(s)	17, 117
FriOI	GRGCYC	1 cut(s)	203
Fsp4HI	GCNGC	1 cut(s)	105
FspBI	CTAG	1 cut(s)	93
GluI	GCNGC	1 cut(s)	105
GsuI	CTGGAG	1 cut(s)	187
HaeIII	GGCC	2 cut(s)	61, 68
Hin1II	CATG	1 cut(s)	91
HinfI	GANTC	1 cut(s)	125
Hpy166II	GTNNAC	1 cut(s)	181
Hpy188I	TCNGA	1 cut(s)	135
Hpy8I	GTNNAC	1 cut(s)	181
HpyAV	CCTTC	2 cut(s)	31, 72
HpyCH4IV	ACGT	1 cut(s)	119
HpyCH4V	TGCA	3 cut(s)	189, 240, 246
HpyF10VI	GCNNNNNNNGC	2 cut(s)	93, 237
HpyF3I	CTNAG	1 cut(s)	108
HpySE526I	ACGT	1 cut(s)	119
Hsp92II	CATG	1 cut(s)	91
LmnI	GCTCC	2 cut(s)	101, 206
LpnPI	CCDG	2 cut(s)	199, 217
Lsp1109I	GCAGC	1 cut(s)	116
MaeI	CTAG	1 cut(s)	93
MaeII	ACGT	1 cut(s)	119
MboII	GAAGA	1 cut(s)	154
MhlI	GDGCHC	1 cut(s)	203
MluCI	AATT	1 cut(s)	191
MnlI	CCTC	3 cut(s)	67, 190, 203
Mph1103I	ATGCAT	1 cut(s)	242
MspA1I	CMGCKG	1 cut(s)	107
MwoI	GCNNNNNNNGC	2 cut(s)	93, 237
NdeI	CATATG	1 cut(s)	242
NlaIII	CATG	1 cut(s)	91
NlaIV	GGNNCC	2 cut(s)	60, 202
NsiI	ATGCAT	1 cut(s)	242
PaqCI	CACCTGC	1 cut(s)	194
PfeI	GAWTC	1 cut(s)	125
PkrI	GCNGC	1 cut(s)	106
PspN4I	GGNNCC	2 cut(s)	60, 202
PspPI	GGNCC	1 cut(s)	59
PvuII	CAGCTG	1 cut(s)	107
SatI	GCNGC	1 cut(s)	105
Sau96I	GGNCC	1 cut(s)	59
SduI	GDGCHC	1 cut(s)	203
SetI	ASST	5 cut(s)	19, 23, 109, 122, 188
Sse9I	AATT	1 cut(s)	191
SsiI	CCGC	1 cut(s)	229
SspMI	CTAG	1 cut(s)	93
TaiI	ACGT	1 cut(s)	122
TasI	AATT	1 cut(s)	191
TfiI	GAWTC	1 cut(s)	125
TscAI	CASTG	1 cut(s)	211
TseI	GCWGC	1 cut(s)	104
TspDTI	ATGAA	1 cut(s)	13
TspRI	CASTG	1 cut(s)	211
XcmI	CCANNNNNNNNNTGG	1 cut(s)	52
XmiI	GTMKAC	1 cut(s)	180
XspI	CTAG	1 cut(s)	93
Zsp2I	ATGCAT	1 cut(s)	242

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.