Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0000828

Physical Location & Seq

Genomic Coordinates Reverse (-)

8852402 .. 8852818

Gene Structure 417 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g12570.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGGAGGTGAAGTTGTACTGGAAGTTCGAAGCGAAGAGATCAATGCAGCAAAAGATCGAGGATCGATCTCCCTCCAATGGCTTAGAATATTCAGCTCCCAAGCAAAGCAAAGTGGGCTCACCCGCCAAAACATCGGCTAAGTTCAGCAGTGGGTTCTCTAAATTAGTCCCAGTGAGCTCTTCTTCAACTGAATTTTCGAGAGCCAGTCCTGGTAAGCCTCCCAAGATTCCCACCCGCAATGAGAGTCTTGCTAGGAGAAAGTCACTAAATAGGTCAATTAACTCGGAACCCAAGTCAAGATATGGTGAACCCTCAGTAGGCATTGATCACAATACGTTTCGTGGTTTGATTATTGTTTATTATGTTCTTTATCAATGTCAAGATGGATCAGAGAAGAATAAACATCTAAAACATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006950 GO:0006979 GO:0007275 GO:0007568 GO:0008150 GO:0008219 GO:0008381 GO:0009581 GO:0009582 GO:0009605 GO:0009612 GO:0009628 GO:0009987 GO:0010150 GO:0012501 GO:0015267 GO:0016020 GO:0022803 GO:0022836 GO:0022857 GO:0032501 GO:0032502 GO:0033554 GO:0034599 GO:0034614 GO:0036473 GO:0042221 GO:0044464 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0050982 GO:0051179 GO:0051234 GO:0051606 GO:0051716 GO:0055085 GO:0070887 GO:0071944 GO:0090693 GO:0097468 GO:0099402 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MS_channel

Protein Analysis

139

Amino Acids

15.52

Weight (kDa)

10.0

Isoelectric Point (pI)

65.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000828)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G12080 AT5G12080 AT5G12080 AT5G19520 AT5G19520
fragaria_vesca	FvH4_2g31211 FvH4_2g31220 FvH4_2g31230 FvH4_2g31240
malus_domestica	MD08G1070000.v1.1 MD15G1052100.v1.1
prunus_persica	Prupe.1G406100_v2.0.a1 Prupe.1G406100_v2.0.a1 Prupe.1G406100_v2.0.a1 Prupe.1G406100_v2.0.a1
pyrus_communis	pycom08g05800 pycom15g04990 pycom16g12570
rosa_chinensis	RchiOBHm_Chr1g0326931 RchiOBHm_Chr1g0326941 RchiOBHm_Chr6g0276141 RchiOBHm_Chr6g0283901 RchiOBHm_Chr6g0311561 RchiOBHm_Chr6g0311571 RchiOBHm_Chr6g0311581 RchiOBHm_Chr6g0311591
rosa_laevigata	RLG00000010389 RLG00000010390 RLG00000010391 RLG00000010393 RLG00000012788 RLG00000030050
rosa_multiflora	Rmu_sc0003315.1_g000003 Rmu_sc0006781.1_g000009 Rmu_sc0007556.1_g000006 Rmu_sc0018059.1_g000002 Rmu_sc0018059.1_g000003
rosa_roxburghii	Rroxscaffold_4G00323490 Rroxscaffold_7G00157470 Rroxscaffold_7G00157480 Rroxscaffold_7G00157490 Rroxscaffold_7G00185080
rosa_rugosa	Rorug01G0062100 Rorug01G0062300 Rorug06G0158200 Rorug06G0158300 Rorug06G0389800.1 Rorug06G0389900
rosa_samantha	Rh1AG079400 Rh1BG063600 Rh1CG077000 Rh1DG083500 Rh6AG504700 Rh6AG504800 Rh6AG504900 Rh6BG272400 Rh6BG515600 Rh6BG515700 Rh6BG515800 Rh6CG521400 Rh6CG521600 Rh6DG266500 Rh6DG507300 Rh6DG507400
rosa_wichuraiana	Rw1G006300 Rw6G018310 Rw6G023400 Rw6G043960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	123, 235
AclWI	GGATC	2 cut(s)	69, 394
AcsI	RAATTY	1 cut(s)	191
AfaI	GTAC	1 cut(s)	17
AfiI	CCNNNNNNNGG	2 cut(s)	77, 317
AgsI	TTSAA	1 cut(s)	186
AjnI	CCWGG	1 cut(s)	208
AluBI	AGCT	2 cut(s)	95, 177
AluI	AGCT	2 cut(s)	95, 177
Alw21I	GWGCWC	1 cut(s)	179
AlwI	GGATC	2 cut(s)	69, 394
ApeKI	GCWGC	1 cut(s)	46
ApoI	RAATTY	1 cut(s)	191
AsuHPI	GGTGA	3 cut(s)	19, 111, 317
AsuII	TTCGAA	1 cut(s)	27
BanII	GRGCYC	2 cut(s)	119, 179
Bbv12I	GWGCWC	1 cut(s)	179
BbvI	GCAGC	1 cut(s)	58
BccI	CCATC	1 cut(s)	377
BciT130I	CCWGG	1 cut(s)	210
BclI	TGATCA	1 cut(s)	325
BfaI	CTAG	1 cut(s)	252
BisI	GCNGC	1 cut(s)	47
BlsI	GCNGC	1 cut(s)	48
Bme1390I	CCNGG	1 cut(s)	210
BmiI	GGNNCC	1 cut(s)	288
BmrFI	CCNGG	1 cut(s)	210
BmrI	ACTGGG	1 cut(s)	164
BmuI	ACTGGG	1 cut(s)	164
Bpu14I	TTCGAA	1 cut(s)	27
Bsa29I	ATCGAT	1 cut(s)	64
BsaXI	ACNNNNNCTCC	1 cut(s)	26
Bsc4I	CCNNNNNNNGG	2 cut(s)	77, 317
Bse1I	ACTGG	3 cut(s)	23, 170, 204
Bse3DI	GCAATG	1 cut(s)	244
BseBI	CCWGG	1 cut(s)	210
BseCI	ATCGAT	1 cut(s)	64
BseLI	CCNNNNNNNGG	2 cut(s)	77, 317
BseMI	GCAATG	1 cut(s)	244
BseMII	CTCAG	1 cut(s)	327
BseNI	ACTGG	3 cut(s)	23, 170, 204
BseXI	GCAGC	1 cut(s)	58
BshVI	ATCGAT	1 cut(s)	64
BsiHKAI	GWGCWC	1 cut(s)	179
BslFI	GGGAC	1 cut(s)	152
BslI	CCNNNNNNNGG	2 cut(s)	77, 317
BsmFI	GGGAC	1 cut(s)	152
Bsp119I	TTCGAA	1 cut(s)	27
Bsp1286I	GDGCHC	2 cut(s)	119, 179
Bsp143I	GATC	6 cut(s)	38, 54, 61, 65, 325, 386
BspACI	CCGC	2 cut(s)	123, 235
BspCNI	CTCAG	1 cut(s)	326
BspDI	ATCGAT	1 cut(s)	64
BspLI	GGNNCC	1 cut(s)	288
BspPI	GGATC	2 cut(s)	69, 394
BspQI	GCTCTTC	1 cut(s)	184
BspT104I	TTCGAA	1 cut(s)	27
BsrDI	GCAATG	1 cut(s)	244
BsrI	ACTGG	3 cut(s)	23, 170, 204
BssMI	GATC	6 cut(s)	38, 54, 61, 65, 325, 386
Bst2UI	CCWGG	1 cut(s)	210
Bst6I	CTCTTC	2 cut(s)	29, 184
BstBI	TTCGAA	1 cut(s)	27
BstDEI	CTNAG	3 cut(s)	82, 138, 313
BstKTI	GATC	6 cut(s)	41, 57, 64, 68, 328, 389
BstMBI	GATC	6 cut(s)	38, 54, 61, 65, 325, 386
BstMWI	GCNNNNNNNGC	1 cut(s)	114
BstNI	CCWGG	1 cut(s)	210
BstSCI	CCNGG	1 cut(s)	208
BstV1I	GCAGC	1 cut(s)	58
Bsu15I	ATCGAT	1 cut(s)	64
BsuTUI	ATCGAT	1 cut(s)	64
BtsI	GCAGTG	1 cut(s)	154
BtsIMutI	CAGTG	2 cut(s)	154, 177
ClaI	ATCGAT	1 cut(s)	64
Csp6I	GTAC	1 cut(s)	16
CviJI	RGCY	7 cut(s)	81, 95, 117, 137, 177, 203, 217
CviKI_1	RGCY	7 cut(s)	81, 95, 117, 137, 177, 203, 217
CviQI	GTAC	1 cut(s)	16
DdeI	CTNAG	3 cut(s)	82, 138, 313
DpnI	GATC	6 cut(s)	40, 56, 63, 67, 327, 388
DpnII	GATC	6 cut(s)	38, 54, 61, 65, 325, 386
Eam1104I	CTCTTC	2 cut(s)	29, 184
EarI	CTCTTC	2 cut(s)	29, 184
Ecl136II	GAGCTC	1 cut(s)	177
Eco24I	GRGCYC	2 cut(s)	119, 179
Eco53kI	GAGCTC	1 cut(s)	177
EcoICRI	GAGCTC	1 cut(s)	177
EcoRII	CCWGG	1 cut(s)	208
EcoT38I	GRGCYC	2 cut(s)	119, 179
FaiI	YATR	2 cut(s)	303, 363
FaqI	GGGAC	1 cut(s)	152
FauI	CCCGC	2 cut(s)	130, 242
FbaI	TGATCA	1 cut(s)	325
Fnu4HI	GCNGC	1 cut(s)	47
FriOI	GRGCYC	2 cut(s)	119, 179
Fsp4HI	GCNGC	1 cut(s)	47
FspBI	CTAG	1 cut(s)	252
GluI	GCNGC	1 cut(s)	47
HinfI	GANTC	2 cut(s)	226, 244
HphI	GGTGA	3 cut(s)	19, 111, 317
Hpy166II	GTNNAC	1 cut(s)	308
Hpy188I	TCNGA	2 cut(s)	286, 391
Hpy188III	TCNNGA	3 cut(s)	198, 297, 380
Hpy8I	GTNNAC	1 cut(s)	308
HpyCH4IV	ACGT	1 cut(s)	335
HpyCH4V	TGCA	1 cut(s)	46
HpyF10VI	GCNNNNNNNGC	1 cut(s)	114
HpyF3I	CTNAG	3 cut(s)	82, 138, 313
HpySE526I	ACGT	1 cut(s)	335
Ksp22I	TGATCA	1 cut(s)	325
Kzo9I	GATC	6 cut(s)	38, 54, 61, 65, 325, 386
LguI	GCTCTTC	1 cut(s)	184
LmnI	GCTCC	1 cut(s)	100
LpnPI	CCDG	5 cut(s)	4, 183, 195, 217, 222
Lsp1109I	GCAGC	1 cut(s)	58
MaeI	CTAG	1 cut(s)	252
MaeII	ACGT	1 cut(s)	335
MaeIII	GTNAC	1 cut(s)	261
MalI	GATC	6 cut(s)	40, 56, 63, 67, 327, 388
MboI	GATC	6 cut(s)	38, 54, 61, 65, 325, 386
MboII	GAAGA	4 cut(s)	46, 171, 174, 406
MhlI	GDGCHC	2 cut(s)	119, 179
MluCI	AATT	3 cut(s)	161, 191, 276
MlyI	GAGTC	1 cut(s)	253
MnlI	CCTC	4 cut(s)	52, 82, 228, 322
MseI	TTAA	1 cut(s)	279
MspR9I	CCNGG	1 cut(s)	210
MvaI	CCWGG	1 cut(s)	210
MwoI	GCNNNNNNNGC	1 cut(s)	114
NdeII	GATC	6 cut(s)	38, 54, 61, 65, 325, 386
NlaIV	GGNNCC	1 cut(s)	288
NmuCI	GTSAC	1 cut(s)	261
NspV	TTCGAA	1 cut(s)	27
PciSI	GCTCTTC	1 cut(s)	184
PfeI	GAWTC	1 cut(s)	226
PkrI	GCNGC	1 cut(s)	48
PleI	GAGTC	1 cut(s)	252
PpsI	GAGTC	1 cut(s)	252
Psp124BI	GAGCTC	1 cut(s)	179
Psp6I	CCWGG	1 cut(s)	208
PspGI	CCWGG	1 cut(s)	208
PspN4I	GGNNCC	1 cut(s)	288
PsrI	GAACNNNNNNTAC	2 cut(s)	8, 40
RsaI	GTAC	1 cut(s)	17
RsaNI	GTAC	1 cut(s)	16
SacI	GAGCTC	1 cut(s)	179
SapI	GCTCTTC	1 cut(s)	184
SaqAI	TTAA	1 cut(s)	279
SatI	GCNGC	1 cut(s)	47
Sau3AI	GATC	6 cut(s)	38, 54, 61, 65, 325, 386
SchI	GAGTC	1 cut(s)	253
ScrFI	CCNGG	1 cut(s)	210
SduI	GDGCHC	2 cut(s)	119, 179
SetI	ASST	5 cut(s)	9, 97, 179, 275, 338
SfuI	TTCGAA	1 cut(s)	27
Sse9I	AATT	3 cut(s)	161, 191, 276
SsiI	CCGC	2 cut(s)	123, 235
SspI	AATATT	1 cut(s)	89
SspMI	CTAG	1 cut(s)	252
SstI	GAGCTC	1 cut(s)	179
StyD4I	CCNGG	1 cut(s)	208
TaiI	ACGT	1 cut(s)	338
TaqI	TCGA	4 cut(s)	27, 57, 64, 197
TasI	AATT	3 cut(s)	161, 191, 276
TatI	WGTACW	1 cut(s)	15
TfiI	GAWTC	1 cut(s)	226
Tru1I	TTAA	1 cut(s)	279
Tru9I	TTAA	1 cut(s)	279
TscAI	CASTG	2 cut(s)	154, 177
TseFI	GTSAC	1 cut(s)	261
TseI	GCWGC	1 cut(s)	46
Tsp45I	GTSAC	1 cut(s)	261
TspRI	CASTG	2 cut(s)	154, 177
XapI	RAATTY	1 cut(s)	191
XspI	CTAG	1 cut(s)	252

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.