Rroxscaffold_7G00185080

Mechanosensitive ion channel protein 10-like

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
Physical Location & Seq
Reverse (-)
24418332 .. 24422529
4198 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00185080.1

Sequence Viewer

Length: 381 bp
ATGAAGTTCATGACTAAGGAAAAGGTGAAGCTTGTGTGGCCGCCGATTGACGTAGCAAAGAATGGACAAATTGGCAAAAATGATTTAACAGATTACGTGGTAAAGGCCAACAAAGATCGCGAAGCATTAGCTTATGCTTTACAAGACACCAAAACAGCTGAAAAGCAATTTGACAGACTTGTGACTGGCATCCCGCATCCTGATTGTTATTACCGTTATAGTTCTAACAATGAGAAGGTATACTATCCGAATTCAGTTTTATCCACAAAAAGCATCAGCAATTATTACAGAAGTTCAGATATGAAAGATACTGTGGAGTTCTCGATTGCTTTGACACCTGTGGAGAAGATAGTCAAGCTCAAAGAGAGAATTAAGGAGTGA

Protein Analysis

126

Amino Acids

14.59

Weight (kDa)

9.18

Isoelectric Point (pI)

14.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 240
AccII CGCG 1 cut(s) 120
AciI CCGC 2 cut(s) 41, 194
AcoI YGGCCR 1 cut(s) 38
AcsI RAATTY 1 cut(s) 250
AluBI AGCT 4 cut(s) 31, 131, 158, 358
AluI AGCT 4 cut(s) 31, 131, 158, 358
AoxI GGCC 2 cut(s) 38, 105
ApoI RAATTY 1 cut(s) 250
AsuHPI GGTGA 1 cut(s) 37
BisI GCNGC 1 cut(s) 41
BlsI GCNGC 1 cut(s) 42
BmsI GCATC 3 cut(s) 198, 205, 282
BsaAI YACGTR 1 cut(s) 97
Bse1I ACTGG 1 cut(s) 190
BseGI GGATG 2 cut(s) 189, 196
BseNI ACTGG 1 cut(s) 190
Bsh1236I CGCG 1 cut(s) 120
BshFI GGCC 2 cut(s) 40, 107
BsnI GGCC 2 cut(s) 40, 107
Bsp143I GATC 1 cut(s) 115
Bsp68I TCGCGA 1 cut(s) 120
BspACI CCGC 2 cut(s) 41, 194
BspANI GGCC 2 cut(s) 40, 107
BspFNI CGCG 1 cut(s) 120
BspHI TCATGA 1 cut(s) 9
BsrI ACTGG 1 cut(s) 190
BssMI GATC 1 cut(s) 115
BssNAI GTATAC 1 cut(s) 241
Bst1107I GTATAC 1 cut(s) 241
Bst4CI ACNGT 2 cut(s) 215, 313
BstBAI YACGTR 1 cut(s) 97
BstDEI CTNAG 1 cut(s) 15
BstF5I GGATG 2 cut(s) 189, 196
BstFNI CGCG 1 cut(s) 120
BstKTI GATC 1 cut(s) 118
BstMBI GATC 1 cut(s) 115
BstMWI GCNNNNNNNGC 1 cut(s) 37
BstUI CGCG 1 cut(s) 120
BstZ17I GTATAC 1 cut(s) 241
BsuRI GGCC 2 cut(s) 40, 107
BtsCI GGATG 2 cut(s) 189, 196
BtuMI TCGCGA 1 cut(s) 120
CciI TCATGA 1 cut(s) 9
CviAII CATG 1 cut(s) 10
CviJI RGCY 6 cut(s) 31, 40, 107, 131, 158, 358
CviKI_1 RGCY 6 cut(s) 31, 40, 107, 131, 158, 358
DdeI CTNAG 1 cut(s) 15
DpnI GATC 1 cut(s) 117
DpnII GATC 1 cut(s) 115
EaeI YGGCCR 1 cut(s) 38
EcoRI GAATTC 1 cut(s) 250
FaeI CATG 1 cut(s) 13
FaiI YATR 5 cut(s) 11, 135, 219, 241, 302
FatI CATG 1 cut(s) 9
FauI CCCGC 1 cut(s) 201
FblI GTMKAC 1 cut(s) 240
Fnu4HI GCNGC 1 cut(s) 41
FokI GGATG 2 cut(s) 176, 183
Fsp4HI GCNGC 1 cut(s) 41
GluI GCNGC 1 cut(s) 41
HaeIII GGCC 2 cut(s) 40, 107
Hin1II CATG 1 cut(s) 13
HindIII AAGCTT 1 cut(s) 29
HphI GGTGA 1 cut(s) 37
Hpy166II GTNNAC 1 cut(s) 241
Hpy188I TCNGA 2 cut(s) 249, 298
Hpy188III TCNNGA 4 cut(s) 10, 119, 200, 322
Hpy8I GTNNAC 1 cut(s) 241
HpyAV CCTTC 1 cut(s) 229
HpyCH4III ACNGT 2 cut(s) 215, 313
HpyCH4IV ACGT 2 cut(s) 51, 96
HpyF10VI GCNNNNNNNGC 1 cut(s) 37
HpyF3I CTNAG 1 cut(s) 15
HpySE526I ACGT 2 cut(s) 51, 96
Hsp92II CATG 1 cut(s) 13
Kzo9I GATC 1 cut(s) 115
LpnPI CCDG 3 cut(s) 171, 213, 351
LweI GCATC 3 cut(s) 198, 205, 282
MaeII ACGT 2 cut(s) 51, 96
MaeIII GTNAC 1 cut(s) 181
MalI GATC 1 cut(s) 117
MboI GATC 1 cut(s) 115
MboII GAAGA 1 cut(s) 358
MluCI AATT 5 cut(s) 69, 167, 250, 280, 369
MseI TTAA 2 cut(s) 86, 372
MspA1I CMGCKG 1 cut(s) 158
MvnI CGCG 1 cut(s) 120
MwoI GCNNNNNNNGC 1 cut(s) 37
NdeII GATC 1 cut(s) 115
NlaIII CATG 1 cut(s) 13
NmuCI GTSAC 1 cut(s) 181
NruI TCGCGA 1 cut(s) 120
PagI TCATGA 1 cut(s) 9
PkrI GCNGC 1 cut(s) 42
Ppu21I YACGTR 1 cut(s) 97
PvuII CAGCTG 1 cut(s) 158
RruI TCGCGA 1 cut(s) 120
SaqAI TTAA 2 cut(s) 86, 372
SatI GCNGC 1 cut(s) 41
Sau3AI GATC 1 cut(s) 115
SetI ASST 9 cut(s) 27, 33, 54, 99, 133, 160, 240, 340, 360
SfaNI GCATC 3 cut(s) 198, 205, 282
Sse9I AATT 5 cut(s) 69, 167, 250, 280, 369
SsiI CCGC 2 cut(s) 41, 194
TaaI ACNGT 2 cut(s) 215, 313
TaiI ACGT 2 cut(s) 54, 99
TaqI TCGA 1 cut(s) 323
TasI AATT 5 cut(s) 69, 167, 250, 280, 369
TauI GCSGC 1 cut(s) 43
Tru1I TTAA 2 cut(s) 86, 372
Tru9I TTAA 2 cut(s) 86, 372
TseFI GTSAC 1 cut(s) 181
Tsp45I GTSAC 1 cut(s) 181
TspDTI ATGAA 2 cut(s) 17, 317
XapI RAATTY 1 cut(s) 250
XmiI GTMKAC 1 cut(s) 240
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.